HHsearch alignment for GI: 254780991 and conserved domain: COG1111
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair].
Probab=99.91 E-value=7.4e-20 Score=167.29 Aligned_cols=435 Identities=18% Similarity=0.216 Sum_probs=254.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCCC--CEEEEEE
Q ss_conf 389999999988739733799863376469999999997----1997899931634689999999986789--8389986
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFPH--NAVEYFV 226 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp~--n~V~~f~ 226 (805)
T Consensus 15 e~R~YQ~~i~a-~al~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~l- 92 (542)
T COG1111 15 EPRLYQLNIAA-KALFKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAAL- 92 (542)
T ss_pred CHHHHHHHHHH-HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHEEEE-
T ss_conf 58899999999-9864483899528750799999999999874588489965895179999999999858984332311-
Q ss_pred ECCCCCCCCCCCCCCCCCHHHHCCCCHHHH-HHHHHHHHHHHCCCCEEEECCHHHHC-----CCCCHHHHHCCEEEEECC
Q ss_conf 213444421015554321022103588999-99999999985499849982778961-----689834772257999419
Q gi|254780991|r 227 SYYDYYQPEAYVPRTDTYIEKESSINEQID-RMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIG 300 (805)
Q Consensus 227 S~~~~yqpEay~p~~d~~i~k~~s~n~~i~-~~R~~a~~~l~~~~~~IVVgsrSAIf-----gl~~P~~~lglIIvdEeh 300 (805)
T Consensus 93 -------------------------tGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~-~dv~~lifDEAH 141 (542)
T COG1111 93 -------------------------TGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDL-DDVSLLIFDEAH 141 (542)
T ss_pred -------------------------CCCCCHHHHHHHHH-----HCCEEEECCHHHHHHHHCCCCCH-HHCEEEEECHHH
T ss_conf -------------------------17778688999875-----17789956387776876176676-780589862355
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEC-CCCCHHH--H-HHHHCCCCCCHHHHHCCCCCCCCHHHHCCC
Q ss_conf 81117875323431176563387754533187247831-7888778--8-873104442002221016664001110000
Q gi|254780991|r 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI-FPSHLED--V-AWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 (805)
Q Consensus 301 d~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILds-atps~Es--~-~~Rie~f~deIe~I~~fDplT~~~~~~~~~ 376 (805)
T Consensus 142 RAv-----------GnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kv 210 (542)
T COG1111 142 RAV-----------GNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKV 210 (542)
T ss_pred HCC-----------CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCEE
T ss_conf 413-----------760699999999982568437987238999879999999837954289845788517775140424
Q ss_pred CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH--HCC---
Q ss_conf 100000000256367887545589989989988754433211001244447777533211201451011333--114---
Q gi|254780991|r 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY--LTG--- 451 (805)
Q Consensus 377 ~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~--L~~--- 451 (805)
T Consensus 211 e~i-----kV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~-~~~~~~a~~~-~~~~~~~l~~~a~ 283 (542)
T COG1111 211 EWI-----KVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELR-QIRLIMAKNE-DSDKFRLLSVLAE 283 (542)
T ss_pred EEE-----ECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHH-HHHHHHCCCC-CHHHHHHHHHHHH
T ss_conf 899-----63685899999999999999999999976953235731076899999-9899863576-1788899999999
Q ss_pred ----CCCC-----CCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
Q ss_conf ----4655-----5620233026544213210123447544543245654133323576655444322211101001215
Q gi|254780991|r 452 ----RNPG-----EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR 522 (805)
Q Consensus 452 ----r~~g-----e~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~ 522 (805)
T Consensus 284 ~~kl~~a~elletqGi~~~~~Yl~~-----l~e~~~~--------~~sk~a~~l~~d~~----------------~~~a- 333 (542)
T COG1111 284 AIKLAHALELLETQGIRPFYQYLEK-----LEEEATK--------GGSKAAKSLLADPY----------------FKRA- 333 (542)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHH-----HHHHHCC--------CCHHHHHHHHCCHH----------------HHHH-
T ss_conf 9888899999985086999999999-----9987503--------52077898753820----------------4799-
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHH--HCCCCCCCCCHHHHHHHHHHH
Q ss_conf 554544468675420132200234320124467720000133101688999999863--023212466214789999999
Q gi|254780991|r 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA--QQGLRILLTVLTKRMAEDLTE 600 (805)
Q Consensus 523 ~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~--~~~~R~l~~~~tkr~~e~l~~ 600 (805)
T Consensus 334 --------------l----~-~~~~~-~~~~v~HP---------Kl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~ 384 (542)
T COG1111 334 --------------L----R-LLIRA-DESGVEHP---------KLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVN 384 (542)
T ss_pred --------------H----H-HHHHH-CCCCCCCC---------CHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHH
T ss_conf --------------9----9-99974-00368896---------189999999999723898559999614758999999
Q ss_pred HHHHCCCEEE---------ECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 9863596687---------3257645789999999973189869998458753578777117999628856744460137
Q gi|254780991|r 601 YLYERNIRVR---------YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 (805)
Q Consensus 601 ~~~~~~i~~~---------~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~ 671 (805)
T Consensus 385 ~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEp-----vpSeIR~ 459 (542)
T COG1111 385 FLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEP-----VPSEIRS 459 (542)
T ss_pred HHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECC-----CCHHHHH
T ss_conf 99852875206886114545566658889999999986578518998123224678876567999568-----8578899
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 7665431279986699982489889999999
Q gi|254780991|r 672 IQTIGRAARNVNSKVILYADTITKSIQLAID 702 (805)
Q Consensus 672 ~q~~GRagR~~~G~~il~ad~~t~~~~~ai~ 702 (805)
T Consensus 460 IQR~GRTGR~r~Grv~vLvt~gtrdeayy~~ 490 (542)
T COG1111 460 IQRKGRTGRKRKGRVVVLVTEGTRDEAYYYS 490 (542)
T ss_pred HHHHCCCCCCCCCEEEEEEECCCHHHHHHHH
T ss_conf 9860744557797499999658627899999