HHsearch alignment for GI: 254780991 and conserved domain: COG1197
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].
Probab=99.91 E-value=5.9e-22 Score=182.99 Aligned_cols=331 Identities=22% Similarity=0.255 Sum_probs=221.9
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCE-EEEEEECCCCHHHHHHHHHHHC--
Q ss_conf 3205740266678887421588775477518888884389999999988739733-7998633764699999999971--
Q gi|254780991|r 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKTFTMAKVIEAM-- 192 (805)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~-qlL~GVTGSGKTevya~lI~~~-- 192 (805)
T Consensus 570 ~~~~G~af~~d~---~~q~-----~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~ 641 (1139)
T COG1197 570 QAKKGFAFPPDT---EWQE-----EFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM 641 (1139)
T ss_pred HHCCCCCCCCCH---HHHH-----HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 305687879985---8999-----99854998578789999999998860698661025657687599999999999863
Q ss_pred -CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf -9978999316346899999999867898389986-21344442101555432102210358899999999999985499
Q gi|254780991|r 193 -QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270 (805)
Q Consensus 193 -gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~-S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~ 270 (805)
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~------------------------s~kE~~~il~~la~G~ 697 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFR------------------------SAKEQKEILKGLAEGK 697 (1139)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC------------------------CHHHHHHHHHHHHCCC
T ss_conf 7974999926078689989999987338982588860557------------------------8899999999985698
Q ss_pred CEEEECCHHHHCCCCCHHHHHCCEEEEECCC-CCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf 8499827789616898347722579994198-111787532343117656338775453318724783178887788873
Q gi|254780991|r 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGD-SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 (805)
Q Consensus 271 ~~IVVgsrSAIfgl~~P~~~lglIIvdEehd-~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~R 349 (805)
T Consensus 698 vDIvIGTHrLL~-kdv~FkdLGLlIIDEEqRFGVk~KEkLK~Lr----------------~~VDvLTLSATPIPRTL--- 757 (1139)
T COG1197 698 VDIVIGTHRLLS-KDVKFKDLGLLIIDEEQRFGVKHKEKLKELR----------------ANVDVLTLSATPIPRTL--- 757 (1139)
T ss_pred CCEEEECHHHHC-CCCEEECCCEEEEECHHHCCCCHHHHHHHHH----------------CCCCEEEEECCCCCCHH---
T ss_conf 458996317647-8967704764897443532711789998775----------------05728974178875447---
Q ss_pred HCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10444200222101666400111000010000000025636788754558998998998875443321100124444777
Q gi|254780991|r 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429 (805)
Q Consensus 350 ie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~d 429 (805)
T Consensus 758 -~Msm~Gi---RdlSvI~------TPP~~R~pV~T~V~~~d~~~i----------------------------------- 792 (1139)
T COG1197 758 -NMSLSGI---RDLSVIA------TPPEDRLPVKTFVSEYDDLLI----------------------------------- 792 (1139)
T ss_pred -HHHHHCC---HHHHHCC------CCCCCCCCEEEEEECCCHHHH-----------------------------------
T ss_conf -7777443---0331114------799877212888715882899-----------------------------------
Q ss_pred HHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 75332112014510113331144655562023302654421321012344754454324565413332357665544432
Q gi|254780991|r 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509 (805)
Q Consensus 430 le~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~ 509 (805)
T Consensus 793 -------------------------------------------------------------------------------- 792 (1139)
T COG1197 793 -------------------------------------------------------------------------------- 792 (1139)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCC--
Q ss_conf 221110100121555454446867542013220023432012446772000013310168899999986302321246--
Q gi|254780991|r 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL-- 587 (805)
Q Consensus 510 n~pl~f~e~~~~~~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~-- 587 (805)
T Consensus 793 --------------------------------------------------------------reAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 793 --------------------------------------------------------------REAILRELLRGGQVFYVH 810 (1139)
T ss_pred --------------------------------------------------------------HHHHHHHHHCCCEEEEEE
T ss_conf --------------------------------------------------------------999999871598799994
Q ss_pred --CCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCC
Q ss_conf --621478999999998635966873257645789999999973189869998458753578777117999628856744
Q gi|254780991|r 588 --TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 (805)
Q Consensus 588 --~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~ 665 (805)
T Consensus 811 NrV~~Ie~~~~~L~~LVPEarI--~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGL- 887 (1139)
T COG1197 811 NRVESIEKKAERLRELVPEARI--AVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGL- 887 (1139)
T ss_pred CCCCCHHHHHHHHHHHCCCEEE--EEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCH-
T ss_conf 3331299999999985984688--8852588889999999999728888898823430476777875588965433457-
Q ss_pred CCHHHHHHHHHHHCC-CCCCEEEEEEC
Q ss_conf 460137766543127-99866999824
Q gi|254780991|r 666 RSKTSLIQTIGRAAR-NVNSKVILYAD 691 (805)
Q Consensus 666 ~~~~~~~q~~GRagR-~~~G~~il~ad 691 (805)
T Consensus 888 ---sQLyQLRGRVGRS~~~AYAYfl~p 911 (1139)
T COG1197 888 ---AQLYQLRGRVGRSNKQAYAYFLYP 911 (1139)
T ss_pred ---HHHHHHCCCCCCCCCEEEEEEEEC
T ss_conf ---888875165477676289999626