HHsearch alignment for GI: 254780991 and conserved domain: COG1198

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].

Probab=97.21  E-value=0.00022  Score=51.36  Aligned_cols=75  Identities=16%  Similarity=0.037  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             10012444477775332112014510113331144655562023302654421321012344754454324565413332
Q gi|254780991|r  418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL  497 (805)
Q Consensus       418 ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l  497 (805)
T Consensus       405 lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~C-------------------------------------------  441 (730)
T COG1198         405 LSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDC-------------------------------------------  441 (730)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCC-------------------------------------------
T ss_conf             7999999999998429868999716776540042568-------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCH
Q ss_conf             35766554443222111010012155545444686754201
Q gi|254780991|r  498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE  538 (805)
Q Consensus       498 ~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e  538 (805)
T Consensus       442 ---g~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp  479 (730)
T COG1198         442 ---GYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCP  479 (730)
T ss_pred             ---CCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCC
T ss_conf             ---98024899995127864798067077999899887798