HHsearch alignment for GI: 254780991 and conserved domain: COG1199
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].
Probab=99.04 E-value=3.9e-07 Score=72.01 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHCCCE-EEECCCCCCHHHHHHHHHHHHCCCC-CEEEEHHHH
Q ss_conf 016889999998630232-1246621478999999998635966-8732576457899999999731898-699984587
Q gi|254780991|r 566 TQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKF-DVLVGINLL 642 (805)
Q Consensus 566 ~qvddl~~ei~~~~~~~~-R~l~~~~tkr~~e~l~~~~~~~~i~-~~~~h~~~~~~~r~~il~~~~~g~~-diLvgt~~~ 642 (805)
T Consensus 462 ~~~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~---~~~~~~~l~~f~~~~~~~~lv~~gsf 538 (654)
T COG1199 462 ELLAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQG---EDEREELLEKFKASGEGLILVGGGSF 538 (654)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEECCC---CCCHHHHHHHHHHCCCCEEEEEECCE
T ss_conf 799999999999997479988999178999999999865116453344568---78469999999714786499972331
Q ss_pred HCCCCCCCCCEEEEECCCCCCCCC----------------------------CHHHHHHHHHHHCCCC--CCEEEEEECC
Q ss_conf 535787771179996288567444----------------------------6013776654312799--8669998248
Q gi|254780991|r 643 REGLDIPECGLVAILDADKEGFLR----------------------------SKTSLIQTIGRAARNV--NSKVILYADT 692 (805)
Q Consensus 643 akGlD~p~v~lV~i~dAD~~~f~~----------------------------~~~~~~q~~GRagR~~--~G~~il~ad~ 692 (805)
T Consensus 539 ~EGVD~~g~~l~~vvI~~lP-fp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 539 WEGVDFPGDALRLVVIVGLP-FPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred ECCEECCCCCEEEEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC
T ss_conf 03151688765799998268-99899899999999998726997103458999999998743010478871699997153