HHsearch alignment for GI: 254780991 and conserved domain: COG1202

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only].
Probab=99.67  E-value=1.5e-14  Score=127.48  Aligned_cols=122  Identities=20%  Similarity=0.278  Sum_probs=95.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCC
Q ss_conf             12466214789999999986359668732576457899999999731898699984587535787771179996288567
Q gi|254780991|r  584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG  663 (805)
Q Consensus       584 R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~  663 (805)
T Consensus       442 QtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~-  520 (830)
T COG1202         442 QTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGI-  520 (830)
T ss_pred             CEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCHHHHHHHHHHCCC-
T ss_conf             3699942166699999886107866654437986788888999976087555764245644788751899999987104-


Q ss_pred             CCCCHHHHHHHHHHHCC-CC--CCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             44460137766543127-99--8669998248988999999987888
Q gi|254780991|r  664 FLRSKTSLIQTIGRAAR-NV--NSKVILYADTITKSIQLAIDETTRR  707 (805)
Q Consensus       664 f~~~~~~~~q~~GRagR-~~--~G~~il~ad~~t~~~~~ai~e~~rr  707 (805)
T Consensus       521 ~WLs~~EF~QM~GRAGRp~yHdrGkVyllve-pg~~Y~~~m~~TEde  566 (830)
T COG1202         521 EWLSVREFQQMLGRAGRPDYHDRGKVYLLVE-PGKKYHASMEETEDE  566 (830)
T ss_pred             CCCCHHHHHHHHCCCCCCCCCCCCEEEEEEC-CCHHHCCCCCCCHHH
T ss_conf             3278999999850469987233733999955-770111121351899