HHsearch alignment for GI: 254780991 and conserved domain: COG1202
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only].
Probab=99.67 E-value=1.5e-14 Score=127.48 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=95.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCC
Q ss_conf 12466214789999999986359668732576457899999999731898699984587535787771179996288567
Q gi|254780991|r 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 (805)
Q Consensus 584 R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~ 663 (805)
T Consensus 442 QtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~- 520 (830)
T COG1202 442 QTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGI- 520 (830)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCHHHHHHHHHHCCC-
T ss_conf 3699942166699999886107866654437986788888999976087555764245644788751899999987104-
Q ss_pred CCCCHHHHHHHHHHHCC-CC--CCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 44460137766543127-99--8669998248988999999987888
Q gi|254780991|r 664 FLRSKTSLIQTIGRAAR-NV--NSKVILYADTITKSIQLAIDETTRR 707 (805)
Q Consensus 664 f~~~~~~~~q~~GRagR-~~--~G~~il~ad~~t~~~~~ai~e~~rr 707 (805)
T Consensus 521 ~WLs~~EF~QM~GRAGRp~yHdrGkVyllve-pg~~Y~~~m~~TEde 566 (830)
T COG1202 521 EWLSVREFQQMLGRAGRPDYHDRGKVYLLVE-PGKKYHASMEETEDE 566 (830)
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCEEEEEEC-CCHHHCCCCCCCHHH
T ss_conf 3278999999850469987233733999955-770111121351899