HHsearch alignment for GI: 254780991 and conserved domain: COG1484
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=94.75 E-value=0.17 Score=29.74 Aligned_cols=67 Identities=22% Similarity=0.314 Sum_probs=47.8
Q ss_pred CCCCCCHHHHHHHHH---HHHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 888884389999999---988739733799863376469999999997---19978999316346899999999867898
Q gi|254780991|r 147 YHPSGDQPAAIAQLL---KGIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 (805)
Q Consensus 147 ~~P~gdQ~~Ai~~L~---~~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp~n 220 (805)
T Consensus 83 ~~~~-~~~~~l~~~~~~~~~~~~~-~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~-----~~~el~~~Lk~~~~~~ 155 (254)
T COG1484 83 FQPG-IDKKALEDLASLVEFFERG-ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI-----TAPDLLSKLKAAFDEG 155 (254)
T ss_pred CCCH-HHHHHHHHHHHHHHHHCCC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE-----EHHHHHHHHHHHHHCC
T ss_conf 8855-6699999999999873258-8289989999879999999999999839849998-----8599999999987455