HHsearch alignment for GI: 254780991 and conserved domain: COG2805
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=95.14 E-value=0.13 Score=30.50 Aligned_cols=138 Identities=23% Similarity=0.326 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 899999999887397337998633764699999999971--997899931634689999999986789838998621344
Q gi|254780991|r 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 (805)
Q Consensus 154 ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~--gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~ 231 (805)
T Consensus 114 P~i~~~~~~---~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIE-----------------DPIE~vh~---- 169 (353)
T COG2805 114 PPIVRELAE---SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIE-----------------DPIEYVHE---- 169 (353)
T ss_pred CHHHHHHHH---CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEC-----------------CCHHHHHC----
T ss_conf 779999982---879669986799996787999999998414775168723-----------------74686504----
Q ss_pred CCCCCCCCCCCCCHHHHCCCCHHHHH---H-HHHHH-HHHHCCCCEEEECCH---HHHCCCCCHH--HHHCCEEEEECCC
Q ss_conf 44210155543210221035889999---9-99999-998549984998277---8961689834--7722579994198
Q gi|254780991|r 232 YQPEAYVPRTDTYIEKESSINEQIDR---M-RHSAT-RSLLERNDCIVVSSV---SCIYGIGSVE--SYSQMIVQLKIGD 301 (805)
Q Consensus 232 yqpEay~p~~d~~i~k~~s~n~~i~~---~-R~~a~-~~l~~~~~~IVVgsr---SAIfgl~~P~--~~lglIIvdEehd 301 (805)
T Consensus 170 --------------skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGEmRD~ETi~---~ALtAAETGHLV~~TLHT 232 (353)
T COG2805 170 --------------SKKSLINQREVGRDTLSFANALRAALREDPDVILVGEMRDLETIR---LALTAAETGHLVFGTLHT 232 (353)
T ss_pred --------------CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH---HHHHHHHCCCEEEEECCC
T ss_conf --------------327666687745427889999999860299979982134699999---999898608877774023
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCH
Q ss_conf 11178753234311765633877545331872478317888778887310444200
Q gi|254780991|r 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357 (805)
Q Consensus 302 ~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deI 357 (805)
T Consensus 233 ~------------------sA~------~ti~RiidvFp~~ek~-~vR~~La~sL~ 263 (353)
T COG2805 233 N------------------SAA------KTIDRIIDVFPAEEKD-QVRSQLAESLR 263 (353)
T ss_pred C------------------CHH------HHHHHHHHHCCHHHHH-HHHHHHHHHHH
T ss_conf 6------------------377------7777988738863467-99999999999