HHsearch alignment for GI: 254780991 and conserved domain: COG3973
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only].
Probab=95.99 E-value=0.028 Score=35.64 Aligned_cols=65 Identities=22% Similarity=0.404 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH---------CCCCEEEEECCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 4389999999988739733799863376469999999997---------1997899931634689999999986789838
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA---------MQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~---------~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V 222 (805)
T Consensus 216 EQneIIR-----~ek~-~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPe-LGe~~V 288 (747)
T COG3973 216 EQNEIIR-----FEKN-KILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPE-LGEEGV 288 (747)
T ss_pred HHHHHHH-----CCCC-CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHCHH-HCCCCE
T ss_conf 6777875-----5578-74899558888713588999999985356624668659982838999999875544-166863
Q ss_pred E
Q ss_conf 9
Q gi|254780991|r 223 E 223 (805)
Q Consensus 223 ~ 223 (805)
T Consensus 289 ~ 289 (747)
T COG3973 289 V 289 (747)
T ss_pred E
T ss_conf 6