HHsearch alignment for GI: 254780991 and conserved domain: COG4098
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].
Probab=96.04 E-value=0.088 Score=31.88 Aligned_cols=133 Identities=23% Similarity=0.218 Sum_probs=86.4
Q ss_pred CCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH----HHHCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 7200001331016889999998630232124662147899999999----863596687325764578999999997318
Q gi|254780991|r 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY----LYERNIRVRYMHSEVKTLERIEIIRDLRLG 631 (805)
Q Consensus 556 dp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~----~~~~~i~~~~~h~~~~~~~r~~il~~~~~g 631 (805)
T Consensus 118 ~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S--~--------~~fr-- 185 (441)
T COG4098 118 DTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDS--D--------SYFR-- 185 (441)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC--C--------HHCC--
T ss_conf 689997427985101699999999659869984686101177789999762149866672587--1--------3133--
Q ss_pred CCCEEEEH--HHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 98699984--5875357877711799962885674446013776654312799866999824898899999998788
Q gi|254780991|r 632 KFDVLVGI--NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706 (805)
Q Consensus 632 ~~diLvgt--~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~~~G~~il~ad~~t~~~~~ai~e~~r 706 (805)
T Consensus 186 -~plvVaTtHQLlrFk~aF---D~liIDEVDA--FP~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g~~ 256 (441)
T COG4098 186 -APLVVATTHQLLRFKQAF---DLLIIDEVDA--FPFSDDQSLQYAVKKARKKEGATIYLTATPTKKLERKILKGNL 256 (441)
T ss_pred -CCEEEEEHHHHHHHHHHC---CEEEEECCCC--CCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCE
T ss_conf -447997668888888643---3899830245--6566788899999975123673699964880788887540775