HHsearch alignment for GI: 254780991 and conserved domain: PRK00254
>PRK00254 ski2-like helicase; Provisional.
Probab=99.68 E-value=1e-13 Score=121.36 Aligned_cols=86 Identities=26% Similarity=0.366 Sum_probs=68.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC---CCCC-CCHHHHHHHHHHHCC-CC
Q ss_conf 687325764578999999997318986999845875357877711799962885---6744-460137766543127-99
Q gi|254780991|r 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK---EGFL-RSKTSLIQTIGRAAR-NV 682 (805)
Q Consensus 608 ~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~---~~f~-~~~~~~~q~~GRagR-~~ 682 (805)
T Consensus 296 GVafHHAGL~~~~R~lVE~~Fr~g~Ikvl~aTsTLA~GVNLPAr-~VIi~~~~~~~~~g~~~i~~~e~~QM~GRAGR~G~ 374 (717)
T PRK00254 296 GVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAF-RVIIRDTWRYSEFGMERIPVLEIQQMMGRAGRPKY 374 (717)
T ss_pred CHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCE-EEEEECCEEECCCCCEECCHHHHHHHHHHCCCCCC
T ss_conf 83121589998899999999987995899816446504577605-99992656707997237875368886250699987
Q ss_pred C--CEEEEEECCCC
Q ss_conf 8--66999824898
Q gi|254780991|r 683 N--SKVILYADTIT 694 (805)
Q Consensus 683 ~--G~~il~ad~~t 694 (805)
T Consensus 375 D~~G~~iii~~~~~ 388 (717)
T PRK00254 375 DEVGEAIIVSTTED 388 (717)
T ss_pred CCCCEEEEEECCCC
T ss_conf 88850899954857