HHsearch alignment for GI: 254780991 and conserved domain: PRK00254

>PRK00254 ski2-like helicase; Provisional.
Probab=99.68  E-value=1e-13  Score=121.36  Aligned_cols=86  Identities=26%  Similarity=0.366  Sum_probs=68.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC---CCCC-CCHHHHHHHHHHHCC-CC
Q ss_conf             687325764578999999997318986999845875357877711799962885---6744-460137766543127-99
Q gi|254780991|r  608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK---EGFL-RSKTSLIQTIGRAAR-NV  682 (805)
Q Consensus       608 ~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~---~~f~-~~~~~~~q~~GRagR-~~  682 (805)
T Consensus       296 GVafHHAGL~~~~R~lVE~~Fr~g~Ikvl~aTsTLA~GVNLPAr-~VIi~~~~~~~~~g~~~i~~~e~~QM~GRAGR~G~  374 (717)
T PRK00254        296 GVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAF-RVIIRDTWRYSEFGMERIPVLEIQQMMGRAGRPKY  374 (717)
T ss_pred             CHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCE-EEEEECCEEECCCCCEECCHHHHHHHHHHCCCCCC
T ss_conf             83121589998899999999987995899816446504577605-99992656707997237875368886250699987


Q ss_pred             C--CEEEEEECCCC
Q ss_conf             8--66999824898
Q gi|254780991|r  683 N--SKVILYADTIT  694 (805)
Q Consensus       683 ~--G~~il~ad~~t  694 (805)
T Consensus       375 D~~G~~iii~~~~~  388 (717)
T PRK00254        375 DEVGEAIIVSTTED  388 (717)
T ss_pred             CCCCEEEEEECCCC
T ss_conf             88850899954857