HHsearch alignment for GI: 254780991 and conserved domain: PRK01172

>PRK01172 ski2-like helicase; Provisional.
Probab=99.74  E-value=6.6e-15  Score=130.20  Aligned_cols=87  Identities=26%  Similarity=0.348  Sum_probs=69.1

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC---CCCCC-CHHHHHHHHHHHCC-C
Q ss_conf             6687325764578999999997318986999845875357877711799962885---67444-60137766543127-9
Q gi|254780991|r  607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK---EGFLR-SKTSLIQTIGRAAR-N  681 (805)
Q Consensus       607 i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~---~~f~~-~~~~~~q~~GRagR-~  681 (805)
T Consensus       286 ~GVafHHaGL~~~eR~lVE~~f~~g~i~vl~aT~TLAaGVNlPA-r~VIi~~~~r~~~~~~~~l~~~e~~QM~GRAGR~g  364 (674)
T PRK01172        286 HGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG  364 (674)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCE-EEEEEEEEEEECCCCEEECCHHHHHHHCCCCCCCC
T ss_conf             28283068999899999999998699649971446765447860-59999300781799715777898998613589999


Q ss_pred             C--CCEEEEEECCCC
Q ss_conf             9--866999824898
Q gi|254780991|r  682 V--NSKVILYADTIT  694 (805)
Q Consensus       682 ~--~G~~il~ad~~t  694 (805)
T Consensus       365 ~D~~G~~ii~~~~~~  379 (674)
T PRK01172        365 YDQYGIGYIYAASPA  379 (674)
T ss_pred             CCCCCCEEEEECCCH
T ss_conf             998870899972822