HHsearch alignment for GI: 254780991 and conserved domain: PRK01172
>PRK01172 ski2-like helicase; Provisional.
Probab=99.74 E-value=6.6e-15 Score=130.20 Aligned_cols=87 Identities=26% Similarity=0.348 Sum_probs=69.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC---CCCCC-CHHHHHHHHHHHCC-C
Q ss_conf 6687325764578999999997318986999845875357877711799962885---67444-60137766543127-9
Q gi|254780991|r 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK---EGFLR-SKTSLIQTIGRAAR-N 681 (805)
Q Consensus 607 i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~---~~f~~-~~~~~~q~~GRagR-~ 681 (805)
T Consensus 286 ~GVafHHaGL~~~eR~lVE~~f~~g~i~vl~aT~TLAaGVNlPA-r~VIi~~~~r~~~~~~~~l~~~e~~QM~GRAGR~g 364 (674)
T PRK01172 286 HGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCE-EEEEEEEEEEECCCCEEECCHHHHHHHCCCCCCCC
T ss_conf 28283068999899999999998699649971446765447860-59999300781799715777898998613589999
Q ss_pred C--CCEEEEEECCCC
Q ss_conf 9--866999824898
Q gi|254780991|r 682 V--NSKVILYADTIT 694 (805)
Q Consensus 682 ~--~G~~il~ad~~t 694 (805)
T Consensus 365 ~D~~G~~ii~~~~~~ 379 (674)
T PRK01172 365 YDQYGIGYIYAASPA 379 (674)
T ss_pred CCCCCCEEEEECCCH
T ss_conf 998870899972822