HHsearch alignment for GI: 254780991 and conserved domain: PRK04537

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=100.00  E-value=1.6e-30  Score=247.24  Aligned_cols=124  Identities=21%  Similarity=0.362  Sum_probs=114.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCC
Q ss_conf             23212466214789999999986359668732576457899999999731898699984587535787771179996288
Q gi|254780991|r  581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD  660 (805)
Q Consensus       581 ~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD  660 (805)
T Consensus       256 ~~~k~IIF~nT~~~ve~l~~~L~~~g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VLVaTDVAARGIDIp~V~~VINYD--  333 (574)
T PRK04537        256 EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYD--  333 (574)
T ss_pred             CCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEC--
T ss_conf             776511533418999999999997799689970999999999999999769997997735002335714699799957--


Q ss_pred             CCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             56744460137766543127-99866999824898899999998788888888
Q gi|254780991|r  661 KEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQL  712 (805)
Q Consensus       661 ~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~q~  712 (805)
T Consensus       334 ---lP~~~e~YVHRIGRTGRaGr~G~AITf---v~~~e~~~l~~IE~~i~~~i  380 (574)
T PRK04537        334 ---LPFDAEDYVHRIGRTARLGEEGDAISF---ACERYAMSLPDIEAYIEQKI  380 (574)
T ss_pred             ---CCCCHHHHHCCCCHHHCCCCCEEEEEE---ECHHHHHHHHHHHHHHCCCC
T ss_conf             ---969821411245350378993359998---77799899999999867878