HHsearch alignment for GI: 254780991 and conserved domain: PRK04537
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=94.27 E-value=0.44 Score=26.62 Aligned_cols=161 Identities=14% Similarity=0.115 Sum_probs=96.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHH-HHHC------------CCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 8884389999999988739733799863376469999999-9971------------99789993163468999999998
Q gi|254780991|r 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV-IEAM------------QRPAIVMAPNKILAAQLYSEFKN 215 (805)
Q Consensus 149 P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~l-I~~~------------gr~aLvLvPei~La~QL~~rfk~ 215 (805)
T Consensus 32 PTpIQ~~aIP~iL~----G-kDvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aLILvPTRELA~QI~~~~~~ 106 (574)
T PRK04537 32 CTPIQALTLPVALP----G-GDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (574)
T ss_pred CCHHHHHHHHHHHC----C-CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 99999999999957----9-988998489888999999999999983744345778996199977989999999999999
Q ss_pred HCCCC--EEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCC-----CCHH
Q ss_conf 67898--3899862134444210155543210221035889999999999998549984998277896168-----9834
Q gi|254780991|r 216 FFPHN--AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI-----GSVE 288 (805)
Q Consensus 216 ~Fp~n--~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl-----~~P~ 288 (805)
T Consensus 107 l~~~~~lr~~~l~GG~~------------------------~~~q-----~~~L~~g~dIVVaTPGRLld~L~~~~~~~L 157 (574)
T PRK04537 107 FGADLGLRFALVYGGVD------------------------YDKQ-----RELLQQGVDVIIATPGRLIDYVKQHKVVSL 157 (574)
T ss_pred HHCCCCCEEEEEECCCC------------------------HHHH-----HHHHCCCCCEEEECHHHHHHHHHHCCCCCC
T ss_conf 86458977999979966------------------------8899-----998735999899898999999981798653
Q ss_pred HHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHCCCC
Q ss_conf 77225799941981117875323431176563387754533---1872478317888778887310444
Q gi|254780991|r 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF---RVCGDSIEIFPSHLEDVAWRVSMFG 354 (805)
Q Consensus 289 ~~lglIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f---~~rg~ILdsatps~Es~~~Rie~f~ 354 (805)
T Consensus 158 ~~vk~LVLDEAD~LLd----------~gF~~-di~~IL~~lP~~~~rQ~iLfSATl~~~V~~la~~~l~ 215 (574)
T PRK04537 158 HACEICVLDEADRMFD----------LGFIK-DIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMN 215 (574)
T ss_pred CCEEEEEECCCHHHHC----------CCCHH-HHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCC
T ss_conf 3315899627326542----------87799-9999999666556855899983277799999999779