HHsearch alignment for GI: 254780991 and conserved domain: PRK05298

>PRK05298 excinuclease ABC subunit B; Provisional.
Probab=100.00  E-value=0  Score=1635.42  Aligned_cols=653  Identities=64%  Similarity=1.017  Sum_probs=637.3

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             77547751888888438999999998873973379986337646999999999719978999316346899999999867
Q gi|254780991|r  138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF  217 (805)
Q Consensus       138 ~~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~F  217 (805)
T Consensus         3 ~~~F~l~s~~~P~GDQP~AI~~L~~gi~~g~~~Q~LlGvTGSGKTfTmAnvI~~~~rPtLVlahNKTLAAQLy~Efk~fF   82 (657)
T PRK05298          3 MKPFKLVSPYKPAGDQPQAIAELVEGIESGEKHQTLLGVTGSGKTFTMANVIARVQRPTLVLAHNKTLAAQLYGEFKEFF   82 (657)
T ss_pred             CCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf             88822688899999879999999989974996369970367856689999999868975997665889999999999768


Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEE
Q ss_conf             89838998621344442101555432102210358899999999999985499849982778961689834772257999
Q gi|254780991|r  218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL  297 (805)
Q Consensus       218 p~n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvd  297 (805)
T Consensus        83 P~NaVEYFVSYyDYYQPEAYip~tDtYIEKdssIN~eId~lR~sAT~SLl~RrDVIVVASVSCIYGLGsPe~Y~~~~l~l  162 (657)
T PRK05298         83 PENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIERLRLSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHL  162 (657)
T ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCHHHHHHCEEEE
T ss_conf             88717998514456697111478885242363466999999999999885479869997367616899979997343777


Q ss_pred             ECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCC
Q ss_conf             41981117875323431176563387754533187247831788877888731044420022210166640011100001
Q gi|254780991|r  298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI  377 (805)
Q Consensus       298 Eehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~  377 (805)
T Consensus       163 ~~G~~i~r~~ll~~LV~~qY~RnD~~~~RG~FRVrGDvVdI~Pa~~ed~aiRIeffgDeIE~I~~~Dpltg~~i~~~~~~  242 (657)
T PRK05298        163 RVGQEIDRRELLRRLVELQYERNDIDFQRGTFRVRGDVIDIFPAEYEDRAIRIEFFGDEIERISEFDPLTGEVLGELDRV  242 (657)
T ss_pred             ECCCEECHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCEE
T ss_conf             58977179999999998287767651168555773664788337777616999995780628999827788352433349


Q ss_pred             CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf             00000000256367887545589989989988754433211001244447777533211201451011333114465556
Q gi|254780991|r  378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP  457 (805)
Q Consensus       378 ~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~  457 (805)
T Consensus       243 ~IfPAshyVt~~e~l~~Ai~~I~~EL~eRl~~f~~~gKllEAqRL~qRT~yDlEMl~E~GyCsGIENYSRhl~gR~pGe~  322 (657)
T PRK05298        243 TIYPASHYVTPRERLERAIESIKEELEERLKELEKEGKLLEAQRLEQRTRYDLEMLRELGYCSGIENYSRHLSGRAPGEP  322 (657)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCC
T ss_conf             98178676899799999999999999999999997677798889999988799999982877560121565069998878


Q ss_pred             CHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf             20233026544213210123447544543245654133323576655444322211101001215554544468675420
Q gi|254780991|r  458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL  537 (805)
Q Consensus       458 P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~  537 (805)
T Consensus       323 P~tLlDYfp~DfLl~iDESHvtvPQi~gMy~GDrsRK~~LVe~GFRLPSAlDNRPL~feEFe~~~~q~iyVSATPg~yEl  402 (657)
T PRK05298        323 PPTLLDYFPDDFLLFIDESHVTVPQIGGMYNGDRSRKETLVEYGFRLPSALDNRPLKFEEFEAKVPQTIYVSATPGDYEL  402 (657)
T ss_pred             CCHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHH
T ss_conf             94488757756599983211240878878623157788898705778723348997889999744877999569858988


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf             13220023432012446772000013310168899999986302321246621478999999998635966873257645
Q gi|254780991|r  538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK  617 (805)
Q Consensus       538 e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~  617 (805)
T Consensus       403 ~~s-~~vvEQiIRPTGLlDP~ievrp~~~Qiddl~~ei~~~~~~~er~LvttlTkkmaEdLt~yl~~~~ik~~YlHs~i~  481 (657)
T PRK05298        403 EKS-GQVVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDID  481 (657)
T ss_pred             HHC-CCEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             736-6734577778878798459964878799999999999636976999954598999999999967980799626661


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHH
Q ss_conf             78999999997318986999845875357877711799962885674446013776654312799866999824898899
Q gi|254780991|r  618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI  697 (805)
Q Consensus       618 ~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~~~G~~il~ad~~t~~~  697 (805)
T Consensus       482 t~eR~eIl~~LR~G~~DVlVGINLLREGLDlPEVSLVaILDADKeGFLRs~~SLiQtiGRAARN~~G~vIlYAD~iT~SM  561 (657)
T PRK05298        482 TLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSM  561 (657)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHH
T ss_conf             88999999998588875897500220457876135798870685221035205999987886257974999815450999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999878888888876887188530234667776656665555555543333431279788999999999999999974
Q gi|254780991|r  698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN  777 (805)
Q Consensus       698 ~~ai~e~~rrr~~q~~~n~~~~i~p~~i~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~m~~aa~~  777 (805)
T Consensus       562 ~~ai~ET~rRR~iQ~~yN~~h~ItP~tI~K~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~l~~~M~~aA~~  634 (657)
T PRK05298        562 QKAIDETERRREIQIAYNEEHGITPKTIKKKIRDILDGVYEEEAD-------AKAEKMSKKELEKLIKKLEKQMKEAAKN  634 (657)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCH-------HHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999998999999999956998643163325454132210000-------1101379899999999999999999984


Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             148999999999999999973
Q gi|254780991|r  778 LNFEEAARIRDEIKRLKSSPY  798 (805)
Q Consensus       778 l~fE~Aa~lRD~i~~l~~~~~  798 (805)
T Consensus       635 l~FE~Aa~lRD~i~~l~~~~~  655 (657)
T PRK05298        635 LEFEEAARLRDEIKELKEQLL  655 (657)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH
T ss_conf             799999998999999999871