HHsearch alignment for GI: 254780991 and conserved domain: PRK05580
>PRK05580 primosome assembly protein PriA; Validated.
Probab=96.80 E-value=0.00072 Score=47.50 Aligned_cols=77 Identities=16% Similarity=0.026 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11001244447777533211201451011333114465556202330265442132101234475445432456541333
Q gi|254780991|r 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 (805)
Q Consensus 417 ~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~ 496 (805)
T Consensus 373 ~ls~~l~~~i~~~L~~g~qvll~lnRrGya~~~~C~~C------------------------------------------ 410 (699)
T PRK05580 373 GLSPPLLEAIREALERGEQVLLFLNRRGYAPFLLCRDC------------------------------------------ 410 (699)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHC------------------------------------------
T ss_conf 54699999999999738847999547752251474531------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf 2357665544432221110100121555454446867542013
Q gi|254780991|r 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539 (805)
Q Consensus 497 l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~ 539 (805)
T Consensus 411 ----g~~~~C~~C~~~L~~h~~~~~l~Ch~Cg~~~~~~~~Cp~ 449 (699)
T PRK05580 411 ----GWVARCPHCDGPLTLHRAGRRLRCHHCGYQEPIPRACPE 449 (699)
T ss_pred ----CCEEECCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCC
T ss_conf ----994565678986342068983322646883657554656