HHsearch alignment for GI: 254780991 and conserved domain: PRK06731

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=95.25  E-value=0.21  Score=29.01  Aligned_cols=93  Identities=19%  Similarity=0.248  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf             24556542267743211147558999999998739603205740266678887421588775477518888884389999
Q gi|254780991|r   79 QSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA  158 (805)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~  158 (805)
T Consensus         7 ~e~~i~~~l~ei~~aLleaDV~~~v--v~~~~~~i----k~k--~~~---------~~------~-----~---~~~vi~   55 (270)
T PRK06731          7 KQESVPFIIQKVIRMLEQNDVEQYF--IHAYAEKL----KVK--FEN---------AT------M-----I---TEEVIE   55 (270)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHH----HHH--HCC---------CC------C-----H---HHHHHH
T ss_conf             2650999999999999976998899--99999999----988--504---------55------3-----2---999999


Q ss_pred             HHHHHHHC---------C-CCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECC
Q ss_conf             99998873---------9-733799863376469999999997---19978999316
Q gi|254780991|r  159 QLLKGIHS---------R-EKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPN  202 (805)
Q Consensus       159 ~L~~~l~~---------g-~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPe  202 (805)
T Consensus        56 ~l~~~l~~~~~~~~~~~~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~D  112 (270)
T PRK06731         56 YILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD  112 (270)
T ss_pred             HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             999999875076654679981899988898988999999999998679908999838