HHsearch alignment for GI: 254780991 and conserved domain: PRK06731
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=95.25 E-value=0.21 Score=29.01 Aligned_cols=93 Identities=19% Similarity=0.248 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 24556542267743211147558999999998739603205740266678887421588775477518888884389999
Q gi|254780991|r 79 QSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158 (805)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~ 158 (805)
T Consensus 7 ~e~~i~~~l~ei~~aLleaDV~~~v--v~~~~~~i----k~k--~~~---------~~------~-----~---~~~vi~ 55 (270)
T PRK06731 7 KQESVPFIIQKVIRMLEQNDVEQYF--IHAYAEKL----KVK--FEN---------AT------M-----I---TEEVIE 55 (270)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHH----HHH--HCC---------CC------C-----H---HHHHHH
T ss_conf 2650999999999999976998899--99999999----988--504---------55------3-----2---999999
Q ss_pred HHHHHHHC---------C-CCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECC
Q ss_conf 99998873---------9-733799863376469999999997---19978999316
Q gi|254780991|r 159 QLLKGIHS---------R-EKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPN 202 (805)
Q Consensus 159 ~L~~~l~~---------g-~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPe 202 (805)
T Consensus 56 ~l~~~l~~~~~~~~~~~~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~D 112 (270)
T PRK06731 56 YILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 112 (270)
T ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 999999875076654679981899988898988999999999998679908999838