HHsearch alignment for GI: 254780991 and conserved domain: PRK08074
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=99.32 E-value=3.6e-08 Score=79.74 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHHH----HCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHH
Q ss_conf 016889999998630-23212466214789999999986----3596687325764578999999997318986999845
Q gi|254780991|r 566 TQVEDVYDEINLAAQ-QGLRILLTVLTKRMAEDLTEYLY----ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 (805)
Q Consensus 566 ~qvddl~~ei~~~~~-~~~R~l~~~~tkr~~e~l~~~~~----~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~ 640 (805)
T Consensus 739 ~~~~~la~~i~~l~~~~~G~~LVLFtS~~~L~~v~~~l~~~~~~~~~~ll~Q--g~~~~sr~~ll~~F~~~~~svLlGt~ 816 (932)
T PRK08074 739 EYIEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQ--GVTGGSRARLMKKFQQFDKAILLGTS 816 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEE--CCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf 9999999999999987299999992659999999999864333579559987--89875099999999847984999656
Q ss_pred HHHCCCCCCCCC--EEEEECCC--CCCCCC--------------CH---------HHHHHHHHHHCCCC--CCEEEEEEC
Q ss_conf 875357877711--79996288--567444--------------60---------13776654312799--866999824
Q gi|254780991|r 641 LLREGLDIPECG--LVAILDAD--KEGFLR--------------SK---------TSLIQTIGRAARNV--NSKVILYAD 691 (805)
Q Consensus 641 ~~akGlD~p~v~--lV~i~dAD--~~~f~~--------------~~---------~~~~q~~GRagR~~--~G~~il~ad 691 (805)
T Consensus 817 SFwEGVDlpGd~L~~ViI~kLPF~~P~dP~~~ar~e~l~~~G~n~F~~~~LP~AvlrlkQg~GRLIRs~~DrGvvvilD~ 896 (932)
T PRK08074 817 SFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKKQGENPFQKLSLPQAVLRFKQGFGRLIRTETDRGTVFVLDR 896 (932)
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 64356227998868999980899988989999999999982899535625999999999961026478987699999877
Q ss_pred C
Q ss_conf 8
Q gi|254780991|r 692 T 692 (805)
Q Consensus 692 ~ 692 (805)
T Consensus 897 R 897 (932)
T PRK08074 897 R 897 (932)
T ss_pred C
T ss_conf 6