HHsearch alignment for GI: 254780991 and conserved domain: PRK08770
>PRK08770 DNA polymerase III subunits gamma and tau; Validated.
Probab=90.68 E-value=0.6 Score=25.63 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHCCC-CE-EEEEEECCCCHHHHHHHHHHHC-CCCEEE-EECCHHHHHHHHHHH-HHHCCCCEEEEEEE
Q ss_conf 3899999999887397-33-7998633764699999999971-997899-931634689999999-98678983899862
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE-KV-QLLLGVTGSGKTFTMAKVIEAM-QRPAIV-MAPNKILAAQLYSEF-KNFFPHNAVEYFVS 227 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~-~~-qlL~GVTGSGKTevya~lI~~~-gr~aLv-LvPei~La~QL~~rf-k~~Fp~n~V~~f~S 227 (805)
T Consensus 21 q~~~~~~l~~~~~~~~~~~a~lf~g~rg~gkt-~~ar~~a~~lnc~~~~~~~pc~~--c~~c~~i~~~~~~d-------- 89 (663)
T PRK08770 21 QEHVVRALSNALDSGRVHHAFLFTGTRGVGKT-TIARIFAKSLNCETGTSADPCGQ--CPACLDIDAGRYID-------- 89 (663)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH-HHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHCCCCCC--------
T ss_conf 59999999999970997404762279988888-99999999867899999997877--87789885489886--------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHH-HHCCEEEEECCCCC
Q ss_conf 13444421015554321022103588999999999999854998499827789616898347-72257999419811
Q gi|254780991|r 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES-YSQMIVQLKIGDSV 303 (805)
Q Consensus 228 ~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~-~lglIIvdEehd~~ 303 (805)
T Consensus 90 ----------------~~e~daas~~~v~~~r-----~~~~~----------~~~---~p~~~~~kvy~idevhmls 132 (663)
T PRK08770 90 ----------------LLEIDAASNTGVDDVR-----EVIEN----------AQY---MPSRGKFKVYLIDEVHMLS 132 (663)
T ss_pred ----------------EEEEECCCCCCHHHHH-----HHHHH----------CCC---CCCCCCEEEEEEECHHHCC
T ss_conf ----------------5886467658889999-----99984----------435---8877743699970043328