HHsearch alignment for GI: 254780991 and conserved domain: PRK09354
>PRK09354 recA recombinase A; Provisional.
Probab=95.56 E-value=0.07 Score=32.61 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=65.0
Q ss_pred HHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 9887397337998633764699999999971---9978999316346899999999867898389986213444421015
Q gi|254780991|r 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238 (805)
Q Consensus 162 ~~l~~g~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~ 238 (805)
T Consensus 55 GG~P~G-RivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald~~~a~~l----GVd~d~llv-----~qpd~-- 122 (350)
T PRK09354 55 GGLPKG-RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKL----GVDIDNLLV-----SQPDT-- 122 (350)
T ss_pred CCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHC----CCCHHHEEE-----ECCCH--
T ss_conf 996787-089998898777999999999999975994799960002798899984----977157178-----56867--
Q ss_pred CCCCCCHHHHCCCCHHHHHHHHHHHHHHH-CC-CCEEEECCHHHHC
Q ss_conf 55432102210358899999999999985-49-9849982778961
Q gi|254780991|r 239 PRTDTYIEKESSINEQIDRMRHSATRSLL-ER-NDCIVVSSVSCIY 282 (805)
Q Consensus 239 p~~d~~i~k~~s~n~~i~~~R~~a~~~l~-~~-~~~IVVgsrSAIf 282 (805)
T Consensus 123 -----------------~Eqal~i~e~Lvrsg~vd~IVvDSVaAL~ 151 (350)
T PRK09354 123 -----------------GEQALEIADALVRSGAVDLIVVDSVAALV 151 (350)
T ss_pred -----------------HHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf -----------------99999999999854884189982533457