HHsearch alignment for GI: 254780991 and conserved domain: PRK09354

>PRK09354 recA recombinase A; Provisional.
Probab=95.56  E-value=0.07  Score=32.61  Aligned_cols=92  Identities=21%  Similarity=0.264  Sum_probs=65.0

Q ss_pred             HHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
Q ss_conf             9887397337998633764699999999971---9978999316346899999999867898389986213444421015
Q gi|254780991|r  162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV  238 (805)
Q Consensus       162 ~~l~~g~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~  238 (805)
T Consensus        55 GG~P~G-RivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald~~~a~~l----GVd~d~llv-----~qpd~--  122 (350)
T PRK09354         55 GGLPKG-RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKL----GVDIDNLLV-----SQPDT--  122 (350)
T ss_pred             CCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHC----CCCHHHEEE-----ECCCH--
T ss_conf             996787-089998898777999999999999975994799960002798899984----977157178-----56867--


Q ss_pred             CCCCCCHHHHCCCCHHHHHHHHHHHHHHH-CC-CCEEEECCHHHHC
Q ss_conf             55432102210358899999999999985-49-9849982778961
Q gi|254780991|r  239 PRTDTYIEKESSINEQIDRMRHSATRSLL-ER-NDCIVVSSVSCIY  282 (805)
Q Consensus       239 p~~d~~i~k~~s~n~~i~~~R~~a~~~l~-~~-~~~IVVgsrSAIf  282 (805)
T Consensus       123 -----------------~Eqal~i~e~Lvrsg~vd~IVvDSVaAL~  151 (350)
T PRK09354        123 -----------------GEQALEIADALVRSGAVDLIVVDSVAALV  151 (350)
T ss_pred             -----------------HHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             -----------------99999999999854884189982533457