HHsearch alignment for GI: 254780991 and conserved domain: PRK10689
>PRK10689 transcription-repair coupling factor; Provisional.
Probab=100.00 E-value=3e-40 Score=320.03 Aligned_cols=272 Identities=18% Similarity=0.289 Sum_probs=230.1
Q ss_pred HCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 73973379986337646999999999719978999316346899999999867898389986213444421015554321
Q gi|254780991|r 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244 (805)
Q Consensus 165 ~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~~ 244 (805)
T Consensus 12 ~aG-~~~~l~gL~GSA~al~lA~l~~~~~~p~lvV~~d~~~A~~l~~dL~~-f~~~~V~~f-------------P~wEtL 76 (1148)
T PRK10689 12 KAG-DQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ-FTDQMVMNL-------------ADWETL 76 (1148)
T ss_pred CCC-CEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHH-CCCCCEEEC-------------CCHHCC
T ss_conf 999-71267788606999999999997099889991999999999999985-489725689-------------721047
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCH-HHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 0221035889999999999998549984998277896168983-477225799941981117875323431176563387
Q gi|254780991|r 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 (805)
Q Consensus 245 i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P-~~~lglIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a 323 (805)
T Consensus 77 PYd~~SP~~di~s~Rl~~L~~L~~~~~~IvVttv~ALlqrlpP~~~l~~~~l~L~~G~~ld~d~L~~~L~~~GY~rv~~V 156 (1148)
T PRK10689 77 PYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQV 156 (1148)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 76657998689999999999875289999997689962226998999637389958785499999999998699154505
Q ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 75453318724783178887788873104442002221016664001110000100000000256367887545589989
Q gi|254780991|r 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403 (805)
Q Consensus 324 ~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i~~el 403 (805)
T Consensus 157 ~epGEFAvRGgIIDIFP~~~~-~PvRIEFFgDEIESIR~FDp~TQRSi~~i~~i~I~Pa~E~~l~~~~i~~fr~~~re~f 235 (1148)
T PRK10689 157 MEHGEYATRGALLDLFPMGSE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF 235 (1148)
T ss_pred CCCEEEEEECCEEEECCCCCC-CCEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 885269876898998889988-2669992497876367577010777467775999757256679899999999999873
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEE
Q ss_conf 9899887544332110012444477775332112014510113331144655562023302654421321
Q gi|254780991|r 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473 (805)
Q Consensus 404 ~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~i 473 (805)
T Consensus 236 ~~-----------------~~~~~~iy~~is~g~~~~GiE~ylPLff~----e~l~tLfDYLp~~~liv~ 284 (1148)
T PRK10689 236 EV-----------------KRDPEHIYQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYFPANTLLVN 284 (1148)
T ss_pred CC-----------------CCCHHHHHHHHHCCCCCCCHHHHHHHCCC----CCCCHHHHHCCCCEEEEE
T ss_conf 15-----------------62268999998668974517786032026----542368873777739996