HHsearch alignment for GI: 254780991 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=94.46 E-value=0.41 Score=26.91 Aligned_cols=109 Identities=21% Similarity=0.242 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHCCC----------CEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 3899999999887397----------337998633764699999999971997899931634689999999986789838
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE----------KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~----------~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V 222 (805)
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~IALVGPTGVGKTTTIAKLAArf---------------------~--~~~KkV 272 (436)
T PRK11889 216 EEEVIKYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQF---------------------H--GKKKTV 272 (436)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHH---------------------H--CCCCEE
T ss_conf 99999999999887403101336417179998999988899999999998---------------------6--169808
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC-----CCCEEEECCHHHHCCCCCHHHH---HCCE
Q ss_conf 9986213444421015554321022103588999999999999854-----9984998277896168983477---2257
Q gi|254780991|r 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-----RNDCIVVSSVSCIYGIGSVESY---SQMI 294 (805)
Q Consensus 223 ~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~-----~~~~IVVgsrSAIfgl~~P~~~---lglI 294 (805)
T Consensus 273 ALI--------------TtDTY--------------RIGAVEQLKTYAeIMgVPV~VV~dp~eL~~AL~~lkdka~~DLI 324 (436)
T PRK11889 273 GFI--------------TTDHS--------------RIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYI 324 (436)
T ss_pred EEE--------------ECCCC--------------HHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCCEE
T ss_conf 999--------------80663--------------47699999999998499439968889999999987633688889
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999419811178753234
Q gi|254780991|r 295 VQLKIGDSVEQKELLSSL 312 (805)
Q Consensus 295 IvdEehd~~~~~~~~~~l 312 (805)
T Consensus 325 LIDTAGRS~RD~~~I~EL 342 (436)
T PRK11889 325 LIDTAGKNYRASETVEEM 342 (436)
T ss_pred EEECCCCCCCCHHHHHHH
T ss_conf 992989884689999999