HHsearch alignment for GI: 254780991 and conserved domain: PRK13900

>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=90.19  E-value=1.4  Score=22.98  Aligned_cols=95  Identities=19%  Similarity=0.207  Sum_probs=47.7

Q ss_pred             HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
Q ss_conf             99999887397337998633764699999999971997899931634689999999986789838998621344442101
Q gi|254780991|r  158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY  237 (805)
Q Consensus       158 ~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay  237 (805)
T Consensus       151 ~fL~~aV~~r-~NilI~G~TgSGKTTll~aL~~~ip~~eRiitIEDt~EL~l-----~~~p-n~v~l~~~~~~-------  216 (332)
T PRK13900        151 EFLEHAVISK-KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVL-----SSHP-NRVHLLASKGG-------  216 (332)
T ss_pred             HHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHCC-----CCCC-CEEEEEECCCC-------
T ss_conf             9999998648-71999888898899999999835895353566314066356-----6688-88999971688-------


Q ss_pred             CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHH
Q ss_conf             555432102210358899999999999985499849982778
Q gi|254780991|r  238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS  279 (805)
Q Consensus       238 ~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrS  279 (805)
T Consensus       217 --------~g~~~vt~-----~~Ll~~aLR~rPDRIivGEvR  245 (332)
T PRK13900        217 --------QGRAKVTT-----QDLIEACLRLRPDRIIVGELR  245 (332)
T ss_pred             --------CCCCEECH-----HHHHHHHHCCCCCEEEECCCC
T ss_conf             --------88660869-----999999756899758445557