HHsearch alignment for GI: 254780991 and conserved domain: PRK13900
>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=90.19 E-value=1.4 Score=22.98 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=47.7
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
Q ss_conf 99999887397337998633764699999999971997899931634689999999986789838998621344442101
Q gi|254780991|r 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237 (805)
Q Consensus 158 ~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay 237 (805)
T Consensus 151 ~fL~~aV~~r-~NilI~G~TgSGKTTll~aL~~~ip~~eRiitIEDt~EL~l-----~~~p-n~v~l~~~~~~------- 216 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVL-----SSHP-NRVHLLASKGG------- 216 (332)
T ss_pred HHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHCC-----CCCC-CEEEEEECCCC-------
T ss_conf 9999998648-71999888898899999999835895353566314066356-----6688-88999971688-------
Q ss_pred CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHH
Q ss_conf 555432102210358899999999999985499849982778
Q gi|254780991|r 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 (805)
Q Consensus 238 ~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrS 279 (805)
T Consensus 217 --------~g~~~vt~-----~~Ll~~aLR~rPDRIivGEvR 245 (332)
T PRK13900 217 --------QGRAKVTT-----QDLIEACLRLRPDRIIVGELR 245 (332)
T ss_pred --------CCCCEECH-----HHHHHHHHCCCCCEEEECCCC
T ss_conf --------88660869-----999999756899758445557