HHsearch alignment for GI: 254780991 and conserved domain: PTZ00110
>PTZ00110 helicase; Provisional.
Probab=99.98 E-value=2.2e-29 Score=238.57 Aligned_cols=115 Identities=22% Similarity=0.326 Sum_probs=106.5
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECC
Q ss_conf 02321246621478999999998635966873257645789999999973189869998458753578777117999628
Q gi|254780991|r 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659 (805)
Q Consensus 580 ~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dA 659 (805)
T Consensus 426 ~~~~kvIIFvnTK~~ad~L~~~L~~~G~~a~~LHGd~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDI~dV~~VINYD- 504 (602)
T PTZ00110 426 MDGGKILIFSETKKGADTLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKHPIMIATDVASRGLDVRDVKYVINFD- 504 (602)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEEC-
T ss_conf 7899689992973899999999986799579820889999999999999769998898822233155515798799958-
Q ss_pred CCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHH
Q ss_conf 856744460137766543127-9986699982489889999
Q gi|254780991|r 660 DKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQL 699 (805)
Q Consensus 660 D~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ 699 (805)
T Consensus 505 ----~P~~~edYVHRIGRTGRAG~kG~A~TF~Tpd~~~~a~ 541 (602)
T PTZ00110 505 ----FPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRSAR 541 (602)
T ss_pred ----CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHH
T ss_conf ----9798022101356150689931699997777077899