HHsearch alignment for GI: 254780991 and conserved domain: TIGR00631
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=94.31 E-value=0.36 Score=27.34 Aligned_cols=286 Identities=16% Similarity=0.182 Sum_probs=153.6
Q ss_pred HHHHHHH---------HHHHHHHHCC-CHHHHHHHHHCCCCCH---HHH--HHHHHHHHCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 1677641---------3456664233-1368888874022100---036--77775101023234321000367532100
Q gi|254780991|r 8 FPKKDSR---------IQSISTRVDD-LDYFSFEEKQLEVDKT---MVA--DAMRRIRSEAGKHRKNAAKRMLIHQRENT 72 (805)
Q Consensus 8 ~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (805)
T Consensus 242 fPA~HyV~p~e~~~~Ai~~I~~EL~eRl~~f~~~~kllEaQRL~qRT~yDLEMl~e~G~C~GIEN--YSRhl~GR~~GEp 319 (667)
T TIGR00631 242 FPASHYVTPEERLERAIKEIEKELEERLKYFEEQGKLLEAQRLKQRTEYDLEMLREMGYCSGIEN--YSRHLSGRKPGEP 319 (667)
T ss_pred ECCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCH--HCCCCCCCCCCCC
T ss_conf 05400025804799999999999999999998779517888898868877888750673377000--0002167776315
Q ss_pred HHHHHCCHHHHHHH---H-------------HHHHHHHHHCCHHHHHHHHHHHHHCC---------CHH-------HHCC
Q ss_conf 02320124556542---2-------------67743211147558999999998739---------603-------2057
Q gi|254780991|r 73 ASKGEFQSQSSISM---S-------------EKQTREISEQTMTPSVQALARLIQSD---------NPL-------LKNG 120 (805)
Q Consensus 73 ~~~~~~~~~~~~~~---~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~-------~~~~ 120 (805)
T Consensus 320 P------~tLlDYF~gfP~DfLlviDESHVT~PQ~~GMY~GD~SR----K~~LVeYGFRLPSAlDNRPLkfeEF~~~~~Q 389 (667)
T TIGR00631 320 P------YTLLDYFIGFPEDFLLVIDESHVTLPQIGGMYNGDRSR----KQTLVEYGFRLPSALDNRPLKFEEFEERINQ 389 (667)
T ss_pred C------CCHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHH----HHHHHHCCCCCCHHCCCCCCCHHHHHHHCCC
T ss_conf 9------64776504688650898840257502213441304676----5433202775300135878987999985598
Q ss_pred CCCCCCCCCCCCCCC------------CC--CCCEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEECCCCHHHHH
Q ss_conf 402666788874215------------88--77547751888888438-9999999988739733799863376469999
Q gi|254780991|r 121 KIWTPHRSWSINNHS------------KD--ITFFQMQTDYHPSGDQP-AAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185 (805)
Q Consensus 121 ~~~~~~~~~~~~~~~------------~~--~~~f~l~~~~~P~gdQ~-~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevy 185 (805)
T Consensus 390 ~vyVSATP-G~~E~e~S~~~vvEQiiRPTGLlDP~i~---VRP~~gQvdDL~~EI~~R~~~------------------- 446 (667)
T TIGR00631 390 VVYVSATP-GDYELEQSGGNVVEQIIRPTGLLDPEIE---VRPTDGQVDDLLSEIRQRVAR------------------- 446 (667)
T ss_pred EEEEECCC-CHHHHHHHCCCEEEEEECCCCCCCCEEE---EECCCCHHHHHHHHHHHHHHC-------------------
T ss_conf 89996388-5899973269158998737786488368---835851588889999999972-------------------
Q ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCC--EEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHH-HHHHH
Q ss_conf 99999719978999316346899999999867898--3899862134444210155543210221035889999-99999
Q gi|254780991|r 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN--AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR-MRHSA 262 (805)
Q Consensus 186 a~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n--~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~-~R~~a 262 (805)
T Consensus 447 -------~ERvLVT----TLTKkMAEdLTdYl~E~Gikv~YLHS--------------------------eIdt~ER~ei 489 (667)
T TIGR00631 447 -------NERVLVT----TLTKKMAEDLTDYLKELGIKVRYLHS--------------------------EIDTLERVEI 489 (667)
T ss_pred -------CCCEEEE----EHHHHHHHHHHHHHHCCCCEEEEECC--------------------------HHHHHHHHHH
T ss_conf -------8948998----20167788999997058837987145--------------------------5789999999
Q ss_pred HHHHHCCCCEEEECC---HHHHCCCCCHHHHHCCEE-EEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEE--
Q ss_conf 999854998499827---789616898347722579-99419811178753234311765633877545331872478--
Q gi|254780991|r 263 TRSLLERNDCIVVSS---VSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI-- 336 (805)
Q Consensus 263 ~~~l~~~~~~IVVgs---rSAIfgl~~P~~~lglII-vdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~IL-- 336 (805)
T Consensus 490 irdLR~G~fDVLVGINLLREGLD---lPEVSLVAILDADKEGF-------LRSerSL-----IQTIGRAARN~~G~VilY 554 (667)
T TIGR00631 490 IRDLRLGEFDVLVGINLLREGLD---LPEVSLVAILDADKEGF-------LRSERSL-----IQTIGRAARNVNGKVILY 554 (667)
T ss_pred HHHHCCCCCEEEEECCHHHCCCC---CHHHHHHHHHCCCCCCC-------CCCCCHH-----HHHHHHHHHCCCCEEEEE
T ss_conf 99844788408860002002465---11488997632788899-------8663027-----889888752579659997
Q ss_pred -ECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf -3178887788873104442002221016664001110000100000000256367887545589
Q gi|254780991|r 337 -EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400 (805)
Q Consensus 337 -dsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i~ 400 (805)
T Consensus 555 AD~iT~sM~~-AI------~ET~RRR-------------~~Q~~YNe~HgItP~ti~K~i~~~~~ 599 (667)
T TIGR00631 555 ADKITDSMQK-AI------EETERRR-------------KIQIAYNEEHGITPQTIRKKIKDILD 599 (667)
T ss_pred CCCCCHHHHH-HH------HHHHHHH-------------HHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 2870078999-99------9878889-------------99999997538978854056888777