HHsearch alignment for GI: 254780991 and conserved domain: TIGR00643

>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.85  E-value=7.5e-05  Score=54.85  Aligned_cols=110  Identities=22%  Similarity=0.383  Sum_probs=90.0

Q ss_pred             HHHHHHHCCCCCCCCCHH----HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHH-HHHCCCCC
Q ss_conf             999863023212466214----7899999999863596687325764578999999997318986999845-87535787
Q gi|254780991|r  574 EINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGLDI  648 (805)
Q Consensus       574 ei~~~~~~~~R~l~~~~t----kr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~-~~akGlD~  648 (805)
T Consensus       348 a~l~~i~~GYQ~ALMAPTEiLA~QHy~~~~~~l~p~~~~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGTHALiqe~vef  427 (721)
T TIGR00643       348 AMLAAIESGYQVALMAPTEILAEQHYDSLRNLLAPLGIEVALLTGSLKGKQRKELLETIASGEIHLVVGTHALIQEKVEF  427 (721)
T ss_pred             HHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
T ss_conf             99999846980999177689999999999996235485788861566787899999998639520573313554521443


Q ss_pred             CCCCEEEEECCCCCCCCCCHHH--------HHHHHHHHC--CCCCCEEE-EEECCC
Q ss_conf             7711799962885674446013--------776654312--79986699-982489
Q gi|254780991|r  649 PECGLVAILDADKEGFLRSKTS--------LIQTIGRAA--RNVNSKVI-LYADTI  693 (805)
Q Consensus       649 p~v~lV~i~dAD~~~f~~~~~~--------~~q~~GRag--R~~~G~~i-l~ad~~  693 (805)
T Consensus       428 ~~L~lVIi----------DEQHRFGV~QR~~L~~KG~~~~~~G~~PH~L~MtATPI  473 (721)
T TIGR00643       428 KRLGLVII----------DEQHRFGVEQRKKLREKGQEGSMIGFAPHVLVMTATPI  473 (721)
T ss_pred             HCCCEEEE----------ECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
T ss_conf             14774899----------32335607899999986220688677777646637881