HHsearch alignment for GI: 254780991 and conserved domain: TIGR00643
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.85 E-value=7.5e-05 Score=54.85 Aligned_cols=110 Identities=22% Similarity=0.383 Sum_probs=90.0
Q ss_pred HHHHHHHCCCCCCCCCHH----HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHH-HHHCCCCC
Q ss_conf 999863023212466214----7899999999863596687325764578999999997318986999845-87535787
Q gi|254780991|r 574 EINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGLDI 648 (805)
Q Consensus 574 ei~~~~~~~~R~l~~~~t----kr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~-~~akGlD~ 648 (805)
T Consensus 348 a~l~~i~~GYQ~ALMAPTEiLA~QHy~~~~~~l~p~~~~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGTHALiqe~vef 427 (721)
T TIGR00643 348 AMLAAIESGYQVALMAPTEILAEQHYDSLRNLLAPLGIEVALLTGSLKGKQRKELLETIASGEIHLVVGTHALIQEKVEF 427 (721)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
T ss_conf 99999846980999177689999999999996235485788861566787899999998639520573313554521443
Q ss_pred CCCCEEEEECCCCCCCCCCHHH--------HHHHHHHHC--CCCCCEEE-EEECCC
Q ss_conf 7711799962885674446013--------776654312--79986699-982489
Q gi|254780991|r 649 PECGLVAILDADKEGFLRSKTS--------LIQTIGRAA--RNVNSKVI-LYADTI 693 (805)
Q Consensus 649 p~v~lV~i~dAD~~~f~~~~~~--------~~q~~GRag--R~~~G~~i-l~ad~~ 693 (805)
T Consensus 428 ~~L~lVIi----------DEQHRFGV~QR~~L~~KG~~~~~~G~~PH~L~MtATPI 473 (721)
T TIGR00643 428 KRLGLVII----------DEQHRFGVEQRKKLREKGQEGSMIGFAPHVLVMTATPI 473 (721)
T ss_pred HCCCEEEE----------ECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
T ss_conf 14774899----------32335607899999986220688677777646637881