>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .

Probab=96.76 E-value=0.039 Score=34.50 Aligned_cols=513 Identities=14% Similarity=0.136 Sum_probs=226.3 Q ss_pred CCCCCCHHHHHHHHHHHHHCCC-CEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHH----HHHHC Q ss_conf 8888843899999999887397-33799863376469999999997----199789993163468999999----99867 Q gi|254780991|r 147 YHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSE----FKNFF 217 (805) Q Consensus 147 ~~P~gdQ~~Ai~~L~~~l~~g~-~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~r----fk~~F 217 (805) T Consensus 259 y~~R~~Q~~la~~v~~~l~~Gt~~~~lIEA~tG~GKtlgYLLPal~~~~~~~~~vviST~Tk~LQ~QL~E~d~P~l~~~~ 338 (944) T TIGR01407 259 YEYREEQLKLAELVEDELTHGTEEKSLIEAPTGTGKTLGYLLPALYLAKEEEKPVVISTATKVLQSQLLEKDIPLLNKIL 338 (944) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHC T ss_conf 53138899999999998415766113302376643258999999973137888569983636656565688889888651 Q ss_pred CCC-EEEEEEECCCCCCCCCC---------CCCCCCCHHHHC-----------------------------------CCC Q ss_conf 898-38998621344442101---------555432102210-----------------------------------358 Q gi|254780991|r 218 PHN-AVEYFVSYYDYYQPEAY---------VPRTDTYIEKES-----------------------------------SIN 252 (805) Q Consensus 218 p~n-~V~~f~S~~~~yqpEay---------~p~~d~~i~k~~-----------------------------------s~n 252 (805) T Consensus 339 ~fk~~~~~iKg~~~YlsL~~F~~~L~~~Cet~~~~~~~~KM~~LvWLTETetGDldEl~l~~~~~~f~~~~~~dG~~~l~ 418 (944) T TIGR01407 339 NFKLNVALIKGKKNYLSLQKFSQLLKENCETDNKEFELFKMQVLVWLTETETGDLDELNLLTGNKSFFAEVRHDGLGFLS 418 (944) T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHEEEECCCCCCHHHHCCCCCCCHHHHHHHHHCCCCCC T ss_conf 89712788507655436789999960478882489999987543210037987567520246750357788560564456 Q ss_pred HHHHHHHHHHHHHHHCC--CCEEEEC------CHHHHCCCCCH-HHHHCCEEEEECCCC-----------CCHHHHHHHH Q ss_conf 89999999999998549--9849982------77896168983-477225799941981-----------1178753234 Q gi|254780991|r 253 EQIDRMRHSATRSLLER--NDCIVVS------SVSCIYGIGSV-ESYSQMIVQLKIGDS-----------VEQKELLSSL 312 (805) Q Consensus 253 ~~i~~~R~~a~~~l~~~--~~~IVVg------srSAIfgl~~P-~~~lglIIvdEehd~-----------~~~~~~~~~l 312 (805) T Consensus 419 ~~~~~~~~dF~~~~~~~A~~~~~~itNHA~L~~~~~~~---~~~~~~~~~liiDEAh~l~~~a~n~~~~~~~~~~~~~~i 495 (944) T TIGR01407 419 KKDLFYEVDFYKRAQKKAEQAEILITNHAYLITRLVDK---PELLPEFRLLIIDEAHHLPDIASNLLQEELDYADLKYQI 495 (944) T ss_pred CCCCCHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHC---CCCCCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 65521128899999988833634565017887777644---777766773252226537999998611200488899999 Q ss_pred HHCCCCCCHHHHHHHHHCCCCEE---EECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCH Q ss_conf 31176563387754533187247---831788877888731044420022210166640011100001000000002563 Q gi|254780991|r 313 VKQQYKRQDIGIIRGTFRVCGDS---IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 (805) Q Consensus 313 ~~~~Y~R~D~a~~RG~f~~rg~I---Ldsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~ 389 (805) T Consensus 496 ~~~~~~E~e~L~~r~~q~~~~~~~~~~~~~~-~~~~~L~~~~~e~deLfe~l~~~~~t~~~~s~~~~~~~~yr~~~~R~~ 574 (944) T TIGR01407 496 DKLGKGEKEQLLKRLQQLLKQELLELLEVKE-IDKTLLKASDEELDELFELLFSYVLTQKRDSDSDLLLLKYRIDILREQ 574 (944) T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC T ss_conf 8741387357999999999988898765667-877788888889999999999998763146534553344444554221 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCHHHHHHCCCCCCC-CCHHHHHCCC Q ss_conf 6788754558998998998875443321100124444777753321--120145101133311446555-6202330265 Q gi|254780991|r 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET--TGSCQSIENYSRYLTGRNPGE-PPPTLFEYIP 466 (805) Q Consensus 390 e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e--~G~~~gienyS~~L~~r~~ge-~P~tL~dY~p 466 (805) T Consensus 575 ~~l~~~~~~~~K~~~~~~--~~L~k~l~~~~~l~~~~~~~L~~~~~~~~~~f~~~~q------~l~e~E~~~~~l~~~~D 646 (944) T TIGR01407 575 NVLTEEIKDSGKKLHEIL--DELNKLLQIFSELEHKVLDQLEKFDLALKDDFKRVIQ------SLKEEERILYELLLELD 646 (944) T ss_pred CHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHEEEEEEEC T ss_conf 138999986202589999--8537899998773045888999998867889999999------88676412101345535 Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHH------ Q ss_conf 44213210123447544543245654133323576655444322211101001215554544468675420132------ Q gi|254780991|r 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC------ 540 (805) Q Consensus 467 ~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~~------ 540 (805) T Consensus 647 ~~~~~wi~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~p~~~~~~~~SaTL~~~~~~~~~~~lLG 709 (944) T TIGR01407 647 DNRVSWIEIELLQAKSKKLLYI-----------------KDLEVGEVLLKRLLPKKKSVILTSATLKISKSKESLPDLLG 709 (944) T ss_pred CCCCEEEEEECCCCCCHHHEEE-----------------EHHHHCCCHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHCC T ss_conf 8851268862154200021143-----------------20110200245542001407898667755587026887338 Q ss_pred -HHHHHHHHHCCCC------------CCCCCCEECCC---CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf -2002343201244------------67720000133---1016889999998630232124662147899999999863 Q gi|254780991|r 541 -QGIIVEQIIRPTG------------LVDPPVEIRSA---RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604 (805) Q Consensus 541 -~~~~~eqi~rptg------------~idp~ieir~~---~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~ 604 (805) T Consensus 710 l~d~~F~t~evptp~~~a~n~~v~~p~D~p~i~~~S~~eYa~~~a~~I~e~~~~~~~--~~LVLFTS~~mL~~V~~~l~~ 787 (944) T TIGR01407 710 LTDVKFKTIEVPTPLNYAENARVLVPTDAPAIKNVSLEEYAQEVASKIVELAALESP--KILVLFTSKEMLKAVYDLLKE 787 (944) T ss_pred CCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHCCC--CEEEEHHHHHHHHHHHHHHHH T ss_conf 964227898735876542111562000102230157889999999999999720689--627516489999999998530 Q ss_pred CCC--EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCC------------------CC Q ss_conf 596--6873257645789999999973189869998458753578777117999628856------------------74 Q gi|254780991|r 605 RNI--RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE------------------GF 664 (805) Q Consensus 605 ~~i--~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~------------------~f 664 (805) T Consensus 788 l~~~~~~~~LaQ~~nsGs~~ki~K~F~~ge~~ILLG~~SFWEGvDf~~~~~~~lvi~RLPF~nP~~pL~kk~~~~~~~EG 867 (944) T TIGR01407 788 LSEEEGLEVLAQGINSGSRAKIKKRFEKGEKAILLGASSFWEGVDFPGNELVILVIPRLPFANPKEPLTKKKLQKLEEEG 867 (944) T ss_pred CCHHCCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHC T ss_conf 20025806674126778578999986147875661155400240117997179998528677885389999998854311 Q ss_pred CCCH---------HHHHHHHHHHCCCCC--CEEEEEE Q ss_conf 4460---------137766543127998--6699982 Q gi|254780991|r 665 LRSK---------TSLIQTIGRAARNVN--SKVILYA 690 (805) Q Consensus 665 ~~~~---------~~~~q~~GRagR~~~--G~~il~a 690 (805) T Consensus 868 ~npF~~~~lP~A~~RlrQalGRliR~e~drg~~~~LD 904 (944) T TIGR01407 868 KNPFYDYALPMAILRLRQALGRLIRRENDRGSILVLD 904 (944) T ss_pred CCCCHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEC T ss_conf 4641110130799998775100025523554689971

HHsearch alignment for GI: 254780991 and conserved domain: TIGR01407