HHsearch alignment for GI: 254780991 and conserved domain: TIGR01967
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=97.80 E-value=0.00072 Score=47.51 Aligned_cols=145 Identities=21% Similarity=0.234 Sum_probs=93.2
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCC--CEEEEECC-------HHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 9999988739733799863376469999999997199--78999316-------34689999999986789838998621
Q gi|254780991|r 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPN-------KILAAQLYSEFKNFFPHNAVEYFVSY 228 (805)
Q Consensus 158 ~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr--~aLvLvPe-------i~La~QL~~rfk~~Fp~n~V~~f~S~ 228 (805)
T Consensus 75 edI~~AI~~n-QVviiAGETGSGKTTQLPKICLELGrG~~GlI-GHTQPRRlAAR~VA~R~AeELgtplGe-~VGYkVRF 151 (1320)
T TIGR01967 75 EDIAKAIAEN-QVVIIAGETGSGKTTQLPKICLELGRGSRGLI-GHTQPRRLAARSVAERVAEELGTPLGE-LVGYKVRF 151 (1320)
T ss_pred HHHHHHHHHC-CEEEEECCCCCCCCCCCHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCEEEE
T ss_conf 9999999848-98999724487620232167775427876541-247146889999999999983889886-13203663
Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH--HHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHH
Q ss_conf 344442101555432102210358899999999999--985499849982778961689834772257999419811178
Q gi|254780991|r 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR--SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306 (805)
Q Consensus 229 ~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~--~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~ 306 (805)
T Consensus 152 ~D~v~~~t~V-------------KLmTDGiLLAE~Q~DRfL~~---------------------YDTIIIDEAHERS--- 194 (1320)
T TIGR01967 152 EDQVSSNTLV-------------KLMTDGILLAETQQDRFLER---------------------YDTIIIDEAHERS--- 194 (1320)
T ss_pred CCCCCCCCEE-------------EEHHHHHHHHHHHHHHHHHH---------------------CCCEEECCHHHHH---
T ss_conf 1426885436-------------30322358998520022210---------------------6733651123112---
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHCCCC---EEEECCCCCHHHHHHHHC
Q ss_conf 753234311765633877545331872---478317888778887310
Q gi|254780991|r 307 ELLSSLVKQQYKRQDIGIIRGTFRVCG---DSIEIFPSHLEDVAWRVS 351 (805)
Q Consensus 307 ~~~~~l~~~~Y~R~D~a~~RG~f~~rg---~ILdsatps~Es~~~Rie 351 (805)
T Consensus 195 --LNIDFLLGYLK~-------lL~rRPDLKiIITSATID~ERFs~HFn 233 (1320)
T TIGR01967 195 --LNIDFLLGYLKQ-------LLPRRPDLKIIITSATIDPERFSRHFN 233 (1320)
T ss_pred --HHHHHHHHHHHH-------HCCCCCCCCEEEECCCCCHHHHHHHHC
T ss_conf --338899988876-------326688652574002357446878622