HHsearch alignment for GI: 254780991 and conserved domain: TIGR01970
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=96.81 E-value=0.0028 Score=43.15 Aligned_cols=97 Identities=25% Similarity=0.333 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCC---------C
Q ss_conf 7899999999863-59668732576457899999999731898699984587535787771179996288---------5
Q gi|254780991|r 592 KRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD---------K 661 (805)
Q Consensus 592 kr~~e~l~~~~~~-~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD---------~ 661 (805)
T Consensus 231 ~Rv~~~L~e~L~~rs~v~lcPLYG~L~~~aQ~~AI~P~a~GrRKVVLATNiAEtSLTIeGvRvVi--DsGl~R~arFDP~ 308 (858)
T TIGR01970 231 RRVQEQLAERLDARSEVLLCPLYGELELAAQDRAIKPAAAGRRKVVLATNIAETSLTIEGVRVVI--DSGLARVARFDPK 308 (858)
T ss_pred HHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEEHHHHHHHEEECCEEEEE--ECCCCCCCCCCCC
T ss_conf 99999999975178710005767888978999870877466734342000122210017635887--1565567634788
Q ss_pred CCCCCCH------HHHHHHHHHHCCCCCCEEE-EEE
Q ss_conf 6744460------1377665431279986699-982
Q gi|254780991|r 662 EGFLRSK------TSLIQTIGRAARNVNSKVI-LYA 690 (805)
Q Consensus 662 ~~f~~~~------~~~~q~~GRagR~~~G~~i-l~a 690 (805)
T Consensus 309 sG~TRL~~~RisqASA~QRAGRAGRlepGvc~RLw~ 344 (858)
T TIGR01970 309 SGITRLETQRISQASATQRAGRAGRLEPGVCYRLWS 344 (858)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCC
T ss_conf 874024457889733765126332211141112278