HHsearch alignment for GI: 254780991 and conserved domain: TIGR02639

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=94.78  E-value=0.062  Score=33.02  Aligned_cols=116  Identities=15%  Similarity=0.091  Sum_probs=50.4

Q ss_pred             CHHHHHCCHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHCCCHHHHCCCC-CCCCCCCCCCCCCC--CCCCEEEEE
Q ss_conf             0023201245565422677432---11147558999999998739603205740-26667888742158--877547751
Q gi|254780991|r   72 TASKGEFQSQSSISMSEKQTRE---ISEQTMTPSVQALARLIQSDNPLLKNGKI-WTPHRSWSINNHSK--DITFFQMQT  145 (805)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~f~l~~  145 (805)
T Consensus       105 ~~~~~~~gD~Lvalf~E~~S~a~Y~Lk~qgi~Rl~--~~~~ish~i~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---  179 (774)
T TIGR02639       105 GKKEIDIGDLLVALFDEEDSHASYFLKSQGITRLD--ILNYISHGISKDDKKDQLGEEAAEEEEELQEEKEDSAREE---  179 (774)
T ss_pred             CCCCCCCCHHHHEECCCCCCHHHHHHHHCCCCHHH--HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC---
T ss_conf             88602311100111027861310203321786999--9997414554578756331222342014314677787665---


Q ss_pred             CCCCCCCHHHHHHHHHHHHHC----CC-----------------------CEEEEEEECCCCHHHHH---HHHHHHC
Q ss_conf             888888438999999998873----97-----------------------33799863376469999---9999971
Q gi|254780991|r  146 DYHPSGDQPAAIAQLLKGIHS----RE-----------------------KVQLLLGVTGSGKTFTM---AKVIEAM  192 (805)
Q Consensus       146 ~~~P~gdQ~~Ai~~L~~~l~~----g~-----------------------~~qlL~GVTGSGKTevy---a~lI~~~  192 (805)
T Consensus       180 ~~~~~~~~~~aL~~yt~~Lt~~A~~GkiDPLIGRE~EleRtiQvLCRR~KNNPl~VGEPGVGKTAI~EGLA~~I~~~  256 (774)
T TIGR02639       180 DTDKAKKQQDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIVEGLAQRIAEG  256 (774)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCC
T ss_conf             66520046569988415489998608878734566887423332034567887204488864489999999986415