HHsearch alignment for GI: 254780991 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=94.78 E-value=0.062 Score=33.02 Aligned_cols=116 Identities=15% Similarity=0.091 Sum_probs=50.4
Q ss_pred CHHHHHCCHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHCCCHHHHCCCC-CCCCCCCCCCCCCC--CCCCEEEEE
Q ss_conf 0023201245565422677432---11147558999999998739603205740-26667888742158--877547751
Q gi|254780991|r 72 TASKGEFQSQSSISMSEKQTRE---ISEQTMTPSVQALARLIQSDNPLLKNGKI-WTPHRSWSINNHSK--DITFFQMQT 145 (805)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~f~l~~ 145 (805)
T Consensus 105 ~~~~~~~gD~Lvalf~E~~S~a~Y~Lk~qgi~Rl~--~~~~ish~i~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--- 179 (774)
T TIGR02639 105 GKKEIDIGDLLVALFDEEDSHASYFLKSQGITRLD--ILNYISHGISKDDKKDQLGEEAAEEEEELQEEKEDSAREE--- 179 (774)
T ss_pred CCCCCCCCHHHHEECCCCCCHHHHHHHHCCCCHHH--HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC---
T ss_conf 88602311100111027861310203321786999--9997414554578756331222342014314677787665---
Q ss_pred CCCCCCCHHHHHHHHHHHHHC----CC-----------------------CEEEEEEECCCCHHHHH---HHHHHHC
Q ss_conf 888888438999999998873----97-----------------------33799863376469999---9999971
Q gi|254780991|r 146 DYHPSGDQPAAIAQLLKGIHS----RE-----------------------KVQLLLGVTGSGKTFTM---AKVIEAM 192 (805)
Q Consensus 146 ~~~P~gdQ~~Ai~~L~~~l~~----g~-----------------------~~qlL~GVTGSGKTevy---a~lI~~~ 192 (805)
T Consensus 180 ~~~~~~~~~~aL~~yt~~Lt~~A~~GkiDPLIGRE~EleRtiQvLCRR~KNNPl~VGEPGVGKTAI~EGLA~~I~~~ 256 (774)
T TIGR02639 180 DTDKAKKQQDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIVEGLAQRIAEG 256 (774)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 66520046569988415489998608878734566887423332034567887204488864489999999986415