HHsearch alignment for GI: 254780991 and conserved domain: TIGR03158
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.62 E-value=6.2e-13 Score=115.39 Aligned_cols=97 Identities=18% Similarity=0.267 Sum_probs=70.0
Q ss_pred HHHHHHHHHHH--HCCCCCCCCCHHHHHHHHHHHHHHHCC--CEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHC
Q ss_conf 88999999863--023212466214789999999986359--66873257645789999999973189869998458753
Q gi|254780991|r 569 EDVYDEINLAA--QQGLRILLTVLTKRMAEDLTEYLYERN--IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 (805)
Q Consensus 569 ddl~~ei~~~~--~~~~R~l~~~~tkr~~e~l~~~~~~~~--i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~ak 644 (805)
T Consensus 257 ~~~~~~~~~~~~~~~~~r~~v~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~re------k~~~~~~vVaTsaLEl 330 (357)
T TIGR03158 257 SELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRE------RAMQFDILLGTSTVDV 330 (357)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHH------CCCCCCEEEECCCCEE
T ss_conf 9999999999998526717999558999999999998633641145542556188985------0489999998770103
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 57877711799962885674446013776654312
Q gi|254780991|r 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 (805)
Q Consensus 645 GlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRag 679 (805)
T Consensus 331 GIDi-~~d~~i~-~------~~~v~sl~QR~GRaG 357 (357)
T TIGR03158 331 GVDF-KRDWLIF-S------ARDAAAFWQRLGRLG 357 (357)
T ss_pred EEEC-CCCEEEE-C------CCCHHHHHHCCCCCC
T ss_conf 5611-7898995-8------987888997266799