HHsearch alignment for GI: 254780991 and conserved domain: TIGR03158

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.62  E-value=6.2e-13  Score=115.39  Aligned_cols=97  Identities=18%  Similarity=0.267  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHH--HCCCCCCCCCHHHHHHHHHHHHHHHCC--CEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHC
Q ss_conf             88999999863--023212466214789999999986359--66873257645789999999973189869998458753
Q gi|254780991|r  569 EDVYDEINLAA--QQGLRILLTVLTKRMAEDLTEYLYERN--IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE  644 (805)
Q Consensus       569 ddl~~ei~~~~--~~~~R~l~~~~tkr~~e~l~~~~~~~~--i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~ak  644 (805)
T Consensus       257 ~~~~~~~~~~~~~~~~~r~~v~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~re------k~~~~~~vVaTsaLEl  330 (357)
T TIGR03158       257 SELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRE------RAMQFDILLGTSTVDV  330 (357)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHH------CCCCCCEEEECCCCEE
T ss_conf             9999999999998526717999558999999999998633641145542556188985------0489999998770103


Q ss_pred             CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             57877711799962885674446013776654312
Q gi|254780991|r  645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA  679 (805)
Q Consensus       645 GlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRag  679 (805)
T Consensus       331 GIDi-~~d~~i~-~------~~~v~sl~QR~GRaG  357 (357)
T TIGR03158       331 GVDF-KRDWLIF-S------ARDAAAFWQRLGRLG  357 (357)
T ss_pred             EEEC-CCCEEEE-C------CCCHHHHHHCCCCCC
T ss_conf             5611-7898995-8------987888997266799