HHsearch alignment for GI: 254780991 and conserved domain: cd00268

>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=95.77  E-value=0.18  Score=29.59  Aligned_cols=112  Identities=19%  Similarity=0.346  Sum_probs=75.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHH----HCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEH-----HHHHCC-CCCCCC
Q ss_conf             3212466214789999999986----359668732576457899999999731898699984-----587535-787771
Q gi|254780991|r  582 GLRILLTVLTKRMAEDLTEYLY----ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI-----NLLREG-LDIPEC  651 (805)
Q Consensus       582 ~~R~l~~~~tkr~~e~l~~~~~----~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt-----~~~akG-lD~p~v  651 (805)
T Consensus        69 ~~~alil~PTrELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlI~TPgrl~~~l~~~~~~l~~l  144 (203)
T cd00268          69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---KR-GPHIVVATPGRLLDLLERGKLDLSKV  144 (203)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH---HC-CCEEEEECCHHHHHHHHCCCCCCCCC
T ss_conf             966999968799999999999985057983899983898879999998---53-87599968189999998488651322


Q ss_pred             CEEEEECCCC---CCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf             1799962885---67444601377665431279986699982489889999999
Q gi|254780991|r  652 GLVAILDADK---EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID  702 (805)
Q Consensus       652 ~lV~i~dAD~---~~f~~~~~~~~q~~GRagR~~~G~~il~ad~~t~~~~~ai~  702 (805)
T Consensus       145 ~~lVlDEAD~ll~~gf~~~i~~I~~~l-----~~~~Q~~lfSAT~~~~v~~l~~  193 (203)
T cd00268         145 KYLVLDEADRMLDMGFEDQIREILKLL-----PKDRQTLLFSATMPKEVRDLAR  193 (203)
T ss_pred             CEEEEECHHHHHHCCCHHHHHHHHHHC-----CCCCEEEEEEECCCHHHHHHHH
T ss_conf             489998588887477699999999858-----9677799998049988999999