HHsearch alignment for GI: 254780991 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=95.77 E-value=0.18 Score=29.59 Aligned_cols=112 Identities=19% Similarity=0.346 Sum_probs=75.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH----HCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEH-----HHHHCC-CCCCCC
Q ss_conf 3212466214789999999986----359668732576457899999999731898699984-----587535-787771
Q gi|254780991|r 582 GLRILLTVLTKRMAEDLTEYLY----ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI-----NLLREG-LDIPEC 651 (805)
Q Consensus 582 ~~R~l~~~~tkr~~e~l~~~~~----~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt-----~~~akG-lD~p~v 651 (805)
T Consensus 69 ~~~alil~PTrELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlI~TPgrl~~~l~~~~~~l~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---KR-GPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH---HC-CCEEEEECCHHHHHHHHCCCCCCCCC
T ss_conf 966999968799999999999985057983899983898879999998---53-87599968189999998488651322
Q ss_pred CEEEEECCCC---CCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 1799962885---67444601377665431279986699982489889999999
Q gi|254780991|r 652 GLVAILDADK---EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 (805)
Q Consensus 652 ~lV~i~dAD~---~~f~~~~~~~~q~~GRagR~~~G~~il~ad~~t~~~~~ai~ 702 (805)
T Consensus 145 ~~lVlDEAD~ll~~gf~~~i~~I~~~l-----~~~~Q~~lfSAT~~~~v~~l~~ 193 (203)
T cd00268 145 KYLVLDEADRMLDMGFEDQIREILKLL-----PKDRQTLLFSATMPKEVRDLAR 193 (203)
T ss_pred CEEEEECHHHHHHCCCHHHHHHHHHHC-----CCCCEEEEEEECCCHHHHHHHH
T ss_conf 489998588887477699999999858-----9677799998049988999999