HHsearch alignment for GI: 254780991 and conserved domain: cd00984
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.77 E-value=0.095 Score=31.64 Aligned_cols=60 Identities=15% Similarity=0.219 Sum_probs=46.5
Q ss_pred HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 99999988739733799863376469999999997----199789993163468999999998678
Q gi|254780991|r 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFP 218 (805)
Q Consensus 157 i~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp 218 (805)
T Consensus 3 LD~~~gG~~~G-~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm~-~~~~~~R~~s~~~ 66 (242)
T cd00984 3 LDNLTGGLQPG-DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS-KEQLLQRLLASES 66 (242)
T ss_pred HHHHHCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHHH
T ss_conf 23431699998-1899996899999999999999999977995999933353-8899999999982