HHsearch alignment for GI: 254780991 and conserved domain: cd01364

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=97.10  E-value=0.00056  Score=48.35  Aligned_cols=94  Identities=19%  Similarity=0.295  Sum_probs=62.5

Q ss_pred             CCEEEEECCCCCCCHHHHHHH----HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf             754775188888843899999----999887397337-998633764699999999971997899931634689999999
Q gi|254780991|r  139 TFFQMQTDYHPSGDQPAAIAQ----LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF  213 (805)
Q Consensus       139 ~~f~l~~~~~P~gdQ~~Ai~~----L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf  213 (805)
T Consensus        48 k~F~FD~vf~~~~~Q~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~l  127 (352)
T cd01364          48 KTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQL  127 (352)
T ss_pred             EEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             03547868399999899999998999999977885599987788999349975676654444556777688499999999


Q ss_pred             HHHCCCC--EEEEEEECCCCC
Q ss_conf             9867898--389986213444
Q gi|254780991|r  214 KNFFPHN--AVEYFVSYYDYY  232 (805)
Q Consensus       214 k~~Fp~n--~V~~f~S~~~~y  232 (805)
T Consensus       128 f~~~~~~~~~~~v~vS~~EIY  148 (352)
T cd01364         128 FEKLESQNTEYSVKVSYLELY  148 (352)
T ss_pred             HHHHHHCCCCEEEEEEEEEEE
T ss_conf             999984598279999999986