HHsearch alignment for GI: 254780991 and conserved domain: cd01372

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=96.82  E-value=0.0049  Score=41.24  Aligned_cols=90  Identities=22%  Similarity=0.311  Sum_probs=59.7

Q ss_pred             CCEEEEECCCCCCCHHHHHHH----HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf             754775188888843899999----999887397337-998633764699999999971997899931634689999999
Q gi|254780991|r  139 TFFQMQTDYHPSGDQPAAIAQ----LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF  213 (805)
Q Consensus       139 ~~f~l~~~~~P~gdQ~~Ai~~----L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf  213 (805)
T Consensus        40 ~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~~~-----~~~~~~~~Giipr~~~~l  114 (341)
T cd01372          40 KSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFT-----ASEDEEEVGIIPRAIQHI  114 (341)
T ss_pred             CEEECCEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC-----CCCCCCCCCHHHHHHHHH
T ss_conf             268769775999998999999989999998677751699971478898644136778-----887755478789999999


Q ss_pred             HHHCC---C-CEEEEEEECCCCCC
Q ss_conf             98678---9-83899862134444
Q gi|254780991|r  214 KNFFP---H-NAVEYFVSYYDYYQ  233 (805)
Q Consensus       214 k~~Fp---~-n~V~~f~S~~~~yq  233 (805)
T Consensus       115 f~~i~~~~~~~~~~v~~S~~EIYn  138 (341)
T cd01372         115 FKKIDEKKDEPDFQLKVSFLELYN  138 (341)
T ss_pred             HHHHHHCCCCCEEEEEEEEEEEEC
T ss_conf             999972667835999999999989