HHsearch alignment for GI: 254780991 and conserved domain: cd01373
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=95.47 E-value=0.0095 Score=39.13 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=56.2
Q ss_pred CEEEEECCCCCCCHHHHHHHH----HHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 547751888888438999999----99887397337-9986337646999999999719978999316346899999999
Q gi|254780991|r 140 FFQMQTDYHPSGDQPAAIAQL----LKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 (805)
Q Consensus 140 ~f~l~~~~~P~gdQ~~Ai~~L----~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk 214 (805)
T Consensus 42 ~f~FD~Vf~~~~tQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~---~~~~~~Giipr~~~~lf 118 (337)
T cd01373 42 MFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDE---SPHGLQGVIPRIFEYLF 118 (337)
T ss_pred EEECCEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCCCCC---CCCCCCCHHHHHHHHHH
T ss_conf 766981549999989999998698999985888448997447888861798536654445---67543781799999999
Q ss_pred HHC--------CCCEEEEEEECCCCCC
Q ss_conf 867--------8983899862134444
Q gi|254780991|r 215 NFF--------PHNAVEYFVSYYDYYQ 233 (805)
Q Consensus 215 ~~F--------p~n~V~~f~S~~~~yq 233 (805)
T Consensus 119 ~~i~~~~~~~~~~~~~~v~~S~~EIYn 145 (337)
T cd01373 119 SLIQREEEKRGDGLKFLCKCSFLEIYN 145 (337)
T ss_pred HHHHHHHHHCCCCCEEEEEEEEEEEEC
T ss_conf 999888862256724999999999987