HHsearch alignment for GI: 254780991 and conserved domain: cd01373

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=95.47  E-value=0.0095  Score=39.13  Aligned_cols=91  Identities=15%  Similarity=0.185  Sum_probs=56.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHH----HHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf             547751888888438999999----99887397337-9986337646999999999719978999316346899999999
Q gi|254780991|r  140 FFQMQTDYHPSGDQPAAIAQL----LKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK  214 (805)
Q Consensus       140 ~f~l~~~~~P~gdQ~~Ai~~L----~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk  214 (805)
T Consensus        42 ~f~FD~Vf~~~~tQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~---~~~~~~Giipr~~~~lf  118 (337)
T cd01373          42 MFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDE---SPHGLQGVIPRIFEYLF  118 (337)
T ss_pred             EEECCEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCCCCC---CCCCCCCHHHHHHHHHH
T ss_conf             766981549999989999998698999985888448997447888861798536654445---67543781799999999


Q ss_pred             HHC--------CCCEEEEEEECCCCCC
Q ss_conf             867--------8983899862134444
Q gi|254780991|r  215 NFF--------PHNAVEYFVSYYDYYQ  233 (805)
Q Consensus       215 ~~F--------p~n~V~~f~S~~~~yq  233 (805)
T Consensus       119 ~~i~~~~~~~~~~~~~~v~~S~~EIYn  145 (337)
T cd01373         119 SLIQREEEKRGDGLKFLCKCSFLEIYN  145 (337)
T ss_pred             HHHHHHHHHCCCCCEEEEEEEEEEEEC
T ss_conf             999888862256724999999999987