HHsearch alignment for GI: 254780991 and conserved domain: cd01375

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=95.80  E-value=0.014  Score=37.97  Aligned_cols=86  Identities=21%  Similarity=0.293  Sum_probs=55.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHH----HHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf             547751888888438999999----99887397337-9986337646999999999719978999316346899999999
Q gi|254780991|r  140 FFQMQTDYHPSGDQPAAIAQL----LKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK  214 (805)
Q Consensus       140 ~f~l~~~~~P~gdQ~~Ai~~L----~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk  214 (805)
T Consensus        49 ~F~Fd~Vf~~~-tQ~evy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~~~~--------~~~~Giipr~~~~lF  119 (334)
T cd01375          49 SFKFDGVFHNA-SQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTES--------YKDRGLIPRALEQVF  119 (334)
T ss_pred             EEECCEECCCC-CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCCC--------CCCCCHHHHHHHHHH
T ss_conf             77778677999-989999999899999985887257997135689975881378876--------244662678999999


Q ss_pred             HHC---CCCEEEEEEECCCCCCC
Q ss_conf             867---89838998621344442
Q gi|254780991|r  215 NFF---PHNAVEYFVSYYDYYQP  234 (805)
Q Consensus       215 ~~F---p~n~V~~f~S~~~~yqp  234 (805)
T Consensus       120 ~~i~~~~~~~~~v~~S~~EIYnE  142 (334)
T cd01375         120 REVAMRATKTYTVHVSYLEIYNE  142 (334)
T ss_pred             HHHHHCCCCEEEEEEEEEEEECC
T ss_conf             99862868539999999997578