HHsearch alignment for GI: 254780991 and conserved domain: cd01375
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=95.80 E-value=0.014 Score=37.97 Aligned_cols=86 Identities=21% Similarity=0.293 Sum_probs=55.4
Q ss_pred CEEEEECCCCCCCHHHHHHHH----HHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 547751888888438999999----99887397337-9986337646999999999719978999316346899999999
Q gi|254780991|r 140 FFQMQTDYHPSGDQPAAIAQL----LKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 (805)
Q Consensus 140 ~f~l~~~~~P~gdQ~~Ai~~L----~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk 214 (805)
T Consensus 49 ~F~Fd~Vf~~~-tQ~evy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~~~~--------~~~~Giipr~~~~lF 119 (334)
T cd01375 49 SFKFDGVFHNA-SQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTES--------YKDRGLIPRALEQVF 119 (334)
T ss_pred EEECCEECCCC-CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCCC--------CCCCCHHHHHHHHHH
T ss_conf 77778677999-989999999899999985887257997135689975881378876--------244662678999999
Q ss_pred HHC---CCCEEEEEEECCCCCCC
Q ss_conf 867---89838998621344442
Q gi|254780991|r 215 NFF---PHNAVEYFVSYYDYYQP 234 (805)
Q Consensus 215 ~~F---p~n~V~~f~S~~~~yqp 234 (805)
T Consensus 120 ~~i~~~~~~~~~v~~S~~EIYnE 142 (334)
T cd01375 120 REVAMRATKTYTVHVSYLEIYNE 142 (334)
T ss_pred HHHHHCCCCEEEEEEEEEEEECC
T ss_conf 99862868539999999997578