HHsearch alignment for GI: 254780991 and conserved domain: cd01394

>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.59  E-value=0.09  Score=31.79  Aligned_cols=53  Identities=17%  Similarity=0.320  Sum_probs=36.3

Q ss_pred             HHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHH
Q ss_conf             9999999-88739733799863376469999999997---199789993163468999
Q gi|254780991|r  156 AIAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQL  209 (805)
Q Consensus       156 Ai~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL  209 (805)
T Consensus         7 ~lD~vLgGGi~~G-~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE~~~~er~   63 (218)
T cd01394           7 GLDELLGGGVERG-TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERF   63 (218)
T ss_pred             HHHHHHCCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf             8999856998788-79999899998499999999999863698699996655676999