HHsearch alignment for GI: 254780991 and conserved domain: cd01394
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.59 E-value=0.09 Score=31.79 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=36.3
Q ss_pred HHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHH
Q ss_conf 9999999-88739733799863376469999999997---199789993163468999
Q gi|254780991|r 156 AIAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQL 209 (805)
Q Consensus 156 Ai~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL 209 (805)
T Consensus 7 ~lD~vLgGGi~~G-~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE~~~~er~ 63 (218)
T cd01394 7 GLDELLGGGVERG-TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERF 63 (218)
T ss_pred HHHHHHCCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf 8999856998788-79999899998499999999999863698699996655676999