Query gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 805
No_of_seqs 313 out of 2110
Neff 6.3
Searched_HMMs 39220
Date Tue May 31 16:10:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780991.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00631 uvrb excinuclease AB 100.0 0 0 1914.3 41.4 655 140-794 1-667 (667)
2 PRK05298 excinuclease ABC subu 100.0 0 0 1635.4 47.9 653 138-798 3-655 (657)
3 COG0556 UvrB Helicase subunit 100.0 0 0 1617.0 47.0 661 138-800 2-662 (663)
4 COG1198 PriA Primosomal protei 100.0 0 0 663.9 33.3 545 14-722 59-634 (730)
5 PRK05580 primosome assembly pr 100.0 0 0 621.5 33.3 525 12-723 58-604 (699)
6 TIGR00595 priA primosomal prot 100.0 0 0 470.5 23.3 384 172-702 1-404 (524)
7 PRK10689 transcription-repair 100.0 3E-40 7E-45 320.0 14.8 272 165-473 12-284 (1148)
8 COG1197 Mfd Transcription-repa 100.0 3.6E-36 9.3E-41 289.4 17.8 270 168-475 9-279 (1139)
9 PRK11634 ATP-dependent RNA hel 100.0 9.8E-33 2.5E-37 263.7 28.9 121 582-710 245-366 (629)
10 PRK11776 ATP-dependent RNA hel 100.0 1E-31 2.7E-36 256.0 29.1 124 581-712 241-365 (459)
11 PRK11192 ATP-dependent RNA hel 100.0 3E-31 7.7E-36 252.6 23.5 134 582-723 247-381 (417)
12 PRK04537 ATP-dependent RNA hel 100.0 1.6E-30 4E-35 247.2 26.8 124 581-712 256-380 (574)
13 PRK10590 ATP-dependent RNA hel 100.0 3.9E-31 9.8E-36 251.8 23.5 124 582-713 245-369 (457)
14 PRK01297 ATP-dependent RNA hel 100.0 4.9E-30 1.2E-34 243.5 27.6 122 582-711 332-454 (472)
15 PRK04837 ATP-dependent RNA hel 100.0 4.5E-30 1.2E-34 243.8 24.6 121 582-710 256-377 (423)
16 PTZ00110 helicase; Provisional 100.0 2.2E-29 5.7E-34 238.6 24.5 115 580-699 426-541 (602)
17 COG0513 SrmB Superfamily II DN 100.0 3.4E-28 8.7E-33 229.7 24.5 117 584-707 275-392 (513)
18 KOG0331 consensus 100.0 2.4E-27 6.1E-32 223.4 20.3 117 569-692 330-447 (519)
19 PRK13766 Hef nuclease; Provisi 100.0 1.1E-24 2.8E-29 203.5 30.7 422 153-697 20-482 (764)
20 PRK10917 ATP-dependent DNA hel 100.0 7.6E-26 1.9E-30 212.1 24.0 330 139-692 248-584 (677)
21 COG1200 RecG RecG-like helicas 99.9 3.9E-23 9.9E-28 191.8 23.7 330 141-694 255-592 (677)
22 PRK10689 transcription-repair 99.9 8.7E-24 2.2E-28 196.7 20.1 329 117-692 577-918 (1148)
23 TIGR00643 recG ATP-dependent D 99.9 9.4E-23 2.4E-27 189.0 24.7 329 140-690 298-645 (721)
24 KOG0333 consensus 99.9 1.9E-23 4.8E-28 194.2 20.7 146 550-702 487-633 (673)
25 PRK11057 ATP-dependent DNA hel 99.9 2.9E-22 7.5E-27 185.2 26.1 324 145-702 24-353 (607)
26 KOG0338 consensus 99.9 2E-22 5.2E-27 186.5 24.8 115 582-701 426-541 (691)
27 KOG0335 consensus 99.9 9.7E-24 2.5E-28 196.3 14.9 119 582-705 337-456 (482)
28 KOG0330 consensus 99.9 3E-22 7.5E-27 185.2 21.6 108 583-695 301-409 (476)
29 COG1197 Mfd Transcription-repa 99.9 5.9E-22 1.5E-26 183.0 21.7 331 116-691 570-911 (1139)
30 KOG0328 consensus 99.9 7.7E-23 2E-27 189.6 16.4 330 148-712 49-389 (400)
31 KOG0344 consensus 99.9 1.2E-21 3E-26 180.8 21.9 119 585-708 390-510 (593)
32 COG1111 MPH1 ERCC4-like helica 99.9 7.4E-20 1.9E-24 167.3 30.5 435 153-702 15-490 (542)
33 TIGR00580 mfd transcription-re 99.9 4.6E-22 1.2E-26 183.8 17.3 323 117-691 485-829 (997)
34 COG4098 comFA Superfamily II D 99.9 3E-20 7.7E-25 170.2 25.7 324 149-706 98-429 (441)
35 KOG0340 consensus 99.9 4.3E-20 1.1E-24 169.1 23.5 115 583-702 255-370 (442)
36 KOG0346 consensus 99.9 2.9E-20 7.3E-25 170.4 21.4 116 574-694 260-411 (569)
37 KOG0354 consensus 99.9 2E-19 5.1E-24 164.0 25.0 458 137-701 51-537 (746)
38 COG1061 SSL2 DNA or RNA helica 99.9 1E-19 2.5E-24 166.3 23.3 345 145-691 33-390 (442)
39 KOG0342 consensus 99.9 5.6E-20 1.4E-24 168.2 20.0 127 570-705 319-446 (543)
40 KOG0336 consensus 99.9 2.6E-20 6.6E-25 170.7 17.0 130 572-706 455-585 (629)
41 KOG0347 consensus 99.9 6.4E-20 1.6E-24 167.8 17.8 106 584-694 465-571 (731)
42 PRK13767 ATP-dependent helicas 99.9 2.2E-18 5.7E-23 156.2 24.6 125 569-698 271-403 (878)
43 KOG0334 consensus 99.9 4.9E-19 1.2E-23 161.1 20.3 127 560-692 591-719 (997)
44 COG0514 RecQ Superfamily II DN 99.8 1.5E-17 3.9E-22 150.0 25.3 323 145-704 16-348 (590)
45 KOG0345 consensus 99.8 8.2E-18 2.1E-22 152.0 22.9 114 583-701 256-372 (567)
46 KOG0348 consensus 99.8 1E-18 2.6E-23 158.8 18.0 93 606-706 471-564 (708)
47 KOG0341 consensus 99.8 1.1E-19 2.8E-24 166.0 11.5 105 585-694 424-529 (610)
48 KOG0350 consensus 99.8 1.9E-18 4.8E-23 156.7 16.1 111 580-695 427-542 (620)
49 KOG0339 consensus 99.8 4E-18 1E-22 154.3 17.7 104 584-692 470-574 (731)
50 KOG0327 consensus 99.8 7.7E-20 2E-24 167.1 8.5 116 583-706 264-380 (397)
51 COG1201 Lhr Lhr-like helicases 99.8 3.3E-17 8.3E-22 147.5 18.6 123 566-693 237-362 (814)
52 KOG4284 consensus 99.8 2.7E-18 7E-23 155.5 12.7 105 583-692 273-378 (980)
53 PRK02362 ski2-like helicase; P 99.8 1.3E-15 3.2E-20 135.6 23.2 88 606-694 303-398 (736)
54 KOG0332 consensus 99.7 1.9E-17 5E-22 149.1 11.0 120 584-703 332-454 (477)
55 PRK01172 ski2-like helicase; P 99.7 6.6E-15 1.7E-19 130.2 23.9 87 607-694 286-379 (674)
56 KOG0343 consensus 99.7 4E-16 1E-20 139.3 14.1 128 563-700 296-426 (758)
57 cd00079 HELICc Helicase superf 99.7 9E-17 2.3E-21 144.2 10.4 119 566-689 12-131 (131)
58 COG1205 Distinct helicase fami 99.7 7.9E-15 2E-19 129.6 19.6 114 572-690 296-419 (851)
59 COG1204 Superfamily II helicas 99.7 1.6E-13 4.1E-18 119.8 24.0 84 608-692 316-407 (766)
60 PRK00254 ski2-like helicase; P 99.7 1E-13 2.5E-18 121.4 22.8 86 608-694 296-388 (717)
61 COG1202 Superfamily II helicas 99.7 1.5E-14 3.9E-19 127.5 18.0 122 584-707 442-566 (830)
62 TIGR00580 mfd transcription-re 99.7 1.8E-17 4.6E-22 149.4 2.6 431 312-778 1-476 (997)
63 KOG0351 consensus 99.7 2E-14 5.2E-19 126.5 17.6 103 586-693 489-592 (941)
64 PRK09751 putative ATP-dependen 99.6 6.2E-14 1.6E-18 122.9 18.6 124 572-700 234-392 (1490)
65 PRK11448 hsdR type I restricti 99.6 6.1E-14 1.5E-18 123.0 17.8 123 152-303 420-555 (1126)
66 COG1203 CRISPR-associated heli 99.6 3.4E-13 8.7E-18 117.4 20.5 327 153-692 200-549 (733)
67 TIGR00614 recQ_fam ATP-depende 99.6 1.1E-12 2.9E-17 113.5 23.0 328 141-696 7-352 (497)
68 TIGR03158 cas3_cyano CRISPR-as 99.6 6.2E-13 1.6E-17 115.4 21.4 97 569-679 257-357 (357)
69 KOG0326 consensus 99.6 2E-15 5.1E-20 134.1 6.7 112 585-701 325-437 (459)
70 TIGR01389 recQ ATP-dependent D 99.6 3.9E-13 1E-17 116.9 17.8 319 145-697 12-337 (607)
71 PRK04914 ATP-dependent helicas 99.6 2.2E-10 5.6E-15 96.3 31.2 128 567-701 480-611 (955)
72 KOG0337 consensus 99.6 6.7E-14 1.7E-18 122.7 13.1 106 582-692 261-367 (529)
73 COG4096 HsdR Type I site-speci 99.6 6.9E-13 1.8E-17 115.1 17.8 125 148-308 165-303 (875)
74 TIGR01054 rgy reverse gyrase; 99.5 2.7E-11 6.9E-16 103.1 20.9 324 153-658 84-442 (1843)
75 PRK09694 hypothetical protein; 99.5 7E-11 1.8E-15 100.0 21.4 357 141-682 276-664 (878)
76 PRK09401 reverse gyrase; Revie 99.4 3.9E-10 9.9E-15 94.5 23.8 132 140-301 70-210 (1176)
77 COG1110 Reverse gyrase [DNA re 99.4 6.4E-10 1.6E-14 92.8 22.9 130 139-300 73-213 (1187)
78 smart00490 HELICc helicase sup 99.4 1.1E-12 2.9E-17 113.5 7.3 80 596-680 1-80 (82)
79 PRK11664 ATP-dependent RNA hel 99.4 2.7E-09 7E-14 88.1 23.2 87 605-691 238-338 (812)
80 KOG0352 consensus 99.4 8.3E-10 2.1E-14 92.0 20.1 111 586-701 259-370 (641)
81 PRK08074 bifunctional ATP-depe 99.3 3.6E-08 9.2E-13 79.7 27.3 125 566-692 739-897 (932)
82 pfam00271 Helicase_C Helicase 99.3 3.4E-12 8.6E-17 109.9 6.6 75 601-680 2-76 (78)
83 smart00487 DEXDc DEAD-like hel 99.3 6.8E-11 1.7E-15 100.1 12.7 153 146-343 6-172 (201)
84 KOG0952 consensus 99.3 8.7E-10 2.2E-14 91.9 17.2 120 572-692 339-490 (1230)
85 PRK11131 ATP-dependent RNA hel 99.3 1.7E-08 4.3E-13 82.2 23.5 144 158-347 80-234 (1295)
86 KOG0387 consensus 99.3 8.1E-08 2.1E-12 77.1 26.8 432 152-710 209-669 (923)
87 KOG0951 consensus 99.2 1.4E-08 3.7E-13 82.7 20.1 94 596-692 600-701 (1674)
88 KOG0349 consensus 99.2 6.5E-11 1.6E-15 100.3 7.9 113 577-694 500-616 (725)
89 KOG0353 consensus 99.2 1.9E-08 4.9E-13 81.8 19.0 146 565-716 297-489 (695)
90 cd00046 DEXDc DEAD-like helica 99.2 5.2E-10 1.3E-14 93.5 10.6 133 170-341 2-144 (144)
91 KOG0948 consensus 99.2 1.4E-08 3.5E-13 82.9 17.8 115 139-301 126-246 (1041)
92 KOG0947 consensus 99.1 2.1E-08 5.4E-13 81.4 17.2 404 143-692 292-722 (1248)
93 PRK11747 dinG ATP-dependent DN 99.1 8.7E-07 2.2E-11 69.4 25.2 125 566-693 518-675 (697)
94 KOG0329 consensus 99.1 1.9E-09 4.8E-14 89.4 10.9 166 149-358 65-244 (387)
95 COG4581 Superfamily II RNA hel 99.1 3.4E-07 8.6E-12 72.4 21.8 96 604-701 444-547 (1041)
96 COG4889 Predicted helicase [Ge 99.1 1.2E-08 3E-13 83.4 13.9 111 565-695 473-590 (1518)
97 COG1199 DinG Rad3-related DNA 99.0 3.9E-07 9.8E-12 72.0 21.1 123 566-692 462-617 (654)
98 pfam00270 DEAD DEAD/DEAH box h 99.0 5.9E-09 1.5E-13 85.6 11.1 147 152-342 3-161 (167)
99 COG1643 HrpA HrpA-like helicas 98.9 1.1E-07 2.8E-12 76.2 13.2 86 605-690 286-385 (845)
100 PRK07246 bifunctional ATP-depe 98.9 1.9E-05 4.9E-10 59.3 27.6 121 569-692 634-783 (820)
101 KOG0949 consensus 98.9 1.1E-07 2.7E-12 76.2 12.8 97 611-714 967-1066(1330)
102 KOG0920 consensus 98.9 8.5E-07 2.2E-11 69.5 17.3 88 605-692 443-544 (924)
103 PRK13103 secA preprotein trans 98.8 9.5E-07 2.4E-11 69.1 15.4 150 550-701 416-599 (913)
104 TIGR01587 cas3_core CRISPR-ass 98.8 9.8E-07 2.5E-11 69.0 15.2 112 572-691 258-391 (424)
105 pfam12344 UvrB Ultra-violet re 98.8 4.8E-09 1.2E-13 86.2 3.0 43 688-730 1-43 (44)
106 PRK13107 preprotein translocas 98.7 3.3E-07 8.3E-12 72.5 12.3 147 550-701 416-599 (908)
107 PRK09200 preprotein translocas 98.7 9.1E-07 2.3E-11 69.2 14.1 136 559-701 409-553 (799)
108 PRK12900 secA preprotein trans 98.7 1E-06 2.7E-11 68.8 14.3 148 550-701 521-675 (983)
109 PRK12326 preprotein translocas 98.7 2.5E-06 6.4E-11 65.9 16.1 147 550-701 405-566 (775)
110 PRK12901 secA preprotein trans 98.7 6.7E-07 1.7E-11 70.2 13.2 143 550-701 599-753 (1111)
111 PRK12906 secA preprotein trans 98.7 2.7E-06 7E-11 65.6 15.7 138 559-701 417-590 (823)
112 KOG0922 consensus 98.7 4.1E-06 1E-10 64.3 16.5 83 608-690 292-388 (674)
113 PRK13104 secA preprotein trans 98.7 2.4E-06 6E-11 66.1 15.0 150 550-701 411-595 (896)
114 PRK12903 secA preprotein trans 98.7 6.4E-06 1.6E-10 62.9 17.0 143 551-700 394-546 (885)
115 cd00268 DEADc DEAD-box helicas 98.7 1.1E-06 2.8E-11 68.6 12.8 151 149-344 22-187 (203)
116 PRK12899 secA preprotein trans 98.6 1.3E-06 3.3E-11 68.1 12.9 139 557-701 543-689 (969)
117 pfam04851 ResIII Type III rest 98.6 1.8E-07 4.5E-12 74.6 8.4 58 151-213 6-66 (103)
118 PRK12904 preprotein translocas 98.6 1E-06 2.6E-11 68.9 12.0 147 550-701 397-580 (833)
119 KOG0924 consensus 98.6 7.4E-06 1.9E-10 62.4 15.9 87 605-691 596-696 (1042)
120 PRK12898 secA preprotein trans 98.6 1.6E-06 4.1E-11 67.4 12.4 146 550-702 455-610 (673)
121 CHL00122 secA preprotein trans 98.6 1.2E-05 2.9E-10 61.0 16.0 97 550-648 391-490 (891)
122 PRK12902 secA preprotein trans 98.5 3.8E-06 9.8E-11 64.5 12.3 97 550-648 411-510 (946)
123 KOG0390 consensus 98.5 0.00026 6.7E-09 50.8 21.9 426 143-697 235-709 (776)
124 KOG0923 consensus 98.5 9.6E-06 2.4E-10 61.6 12.9 79 607-690 507-604 (902)
125 KOG0926 consensus 98.4 6.6E-06 1.7E-10 62.8 10.7 87 605-691 603-703 (1172)
126 TIGR03117 cas_csf4 CRISPR-asso 98.1 0.0012 3E-08 45.9 28.0 124 566-689 453-613 (636)
127 KOG0385 consensus 98.1 0.0012 3.1E-08 45.8 22.9 398 152-689 171-593 (971)
128 COG0653 SecA Preprotein transl 98.1 3.3E-05 8.5E-10 57.5 9.8 140 559-700 406-552 (822)
129 COG0610 Type I site-specific r 98.0 0.0023 5.8E-08 43.8 29.1 121 152-303 252-389 (962)
130 pfam00176 SNF2_N SNF2 family N 97.9 0.00048 1.2E-08 48.8 12.7 121 153-302 2-131 (295)
131 TIGR00643 recG ATP-dependent D 97.9 7.5E-05 1.9E-09 54.9 7.4 110 574-693 348-473 (721)
132 KOG0391 consensus 97.8 0.002 5.2E-08 44.1 14.4 133 547-679 1240-1376(1958)
133 TIGR01967 DEAH_box_HrpA ATP-de 97.8 0.00072 1.8E-08 47.5 11.6 145 158-351 75-233 (1320)
134 PRK10917 ATP-dependent DNA hel 97.8 0.00032 8.1E-09 50.2 9.6 87 572-658 296-387 (677)
135 KOG0950 consensus 97.7 0.00026 6.5E-09 50.9 7.7 94 606-701 522-619 (1008)
136 KOG4150 consensus 97.7 0.00031 8E-09 50.2 8.2 114 576-694 519-643 (1034)
137 KOG0386 consensus 97.6 0.0077 2E-07 39.8 26.0 409 153-686 399-829 (1157)
138 KOG4439 consensus 97.6 0.0093 2.4E-07 39.2 21.8 112 571-689 737-852 (901)
139 KOG0953 consensus 97.5 0.00087 2.2E-08 46.9 8.4 93 609-702 384-486 (700)
140 PRK12306 uvrC excinuclease ABC 97.5 0.0003 7.7E-09 50.3 5.9 15 107-121 75-93 (519)
141 PRK00558 uvrC excinuclease ABC 97.4 0.00041 1E-08 49.4 6.1 16 107-122 83-102 (609)
142 COG1200 RecG RecG-like helicas 97.4 0.00099 2.5E-08 46.5 7.3 85 574-658 303-392 (677)
143 smart00489 DEXDc3 DEAD-like he 97.3 0.0018 4.7E-08 44.5 8.2 74 143-217 3-85 (289)
144 smart00488 DEXDc2 DEAD-like he 97.3 0.0018 4.7E-08 44.5 8.2 74 143-217 3-85 (289)
145 COG0553 HepA Superfamily II DN 97.3 0.012 3E-07 38.4 12.0 136 566-706 692-833 (866)
146 COG3880 Modulator of heat shoc 97.2 0.00082 2.1E-08 47.1 5.9 45 758-805 132-176 (176)
147 TIGR01054 rgy reverse gyrase; 97.2 0.00068 1.7E-08 47.7 5.3 70 621-692 521-597 (1843)
148 COG1198 PriA Primosomal protei 97.2 0.00022 5.6E-09 51.4 2.7 75 418-538 405-479 (730)
149 COG0322 UvrC Nuclease subunit 97.2 0.0015 3.8E-08 45.1 6.5 35 608-647 446-481 (581)
150 cd01364 KISc_BimC_Eg5 Kinesin 97.1 0.00056 1.4E-08 48.3 3.8 94 139-232 48-148 (352)
151 pfam02151 UVR UvrB/uvrC motif. 97.1 0.00085 2.2E-08 47.0 4.7 34 762-795 2-35 (36)
152 PRK09401 reverse gyrase; Revie 97.0 0.0024 6.1E-08 43.6 6.4 100 147-279 277-384 (1176)
153 KOG0392 consensus 97.0 0.039 9.9E-07 34.6 21.2 412 171-689 993-1448(1549)
154 COG3587 Restriction endonuclea 96.9 0.0038 9.8E-08 42.1 6.9 66 617-688 463-537 (985)
155 KOG1000 consensus 96.9 0.041 1E-06 34.4 20.5 120 578-702 488-614 (689)
156 cd01368 KISc_KIF23_like Kinesi 96.9 0.0041 1E-07 41.9 6.7 83 139-234 55-142 (345)
157 PRK07883 hypothetical protein; 96.8 0.0035 9E-08 42.4 6.0 37 761-797 412-448 (575)
158 cd01372 KISc_KIF4 Kinesin moto 96.8 0.0049 1.3E-07 41.2 6.7 90 139-233 40-138 (341)
159 pfam09848 DUF2075 Uncharacteri 96.8 0.0057 1.5E-07 40.8 7.0 52 169-220 2-58 (348)
160 TIGR02928 TIGR02928 orc1/cdc6 96.8 0.014 3.6E-07 37.9 8.9 66 152-217 24-103 (383)
161 TIGR01970 DEAH_box_HrpB ATP-de 96.8 0.0028 7E-08 43.1 5.3 97 592-690 231-344 (858)
162 PRK05580 primosome assembly pr 96.8 0.00072 1.8E-08 47.5 2.3 77 417-539 373-449 (699)
163 PRK00411 cdc6 cell division co 96.8 0.023 6E-07 36.2 10.0 97 106-217 6-110 (394)
164 cd01366 KISc_C_terminal Kinesi 96.8 0.003 7.7E-08 42.9 5.3 84 139-233 45-137 (329)
165 cd01370 KISc_KIP3_like Kinesin 96.8 0.004 1E-07 42.0 5.9 84 139-233 54-146 (338)
166 TIGR01407 dinG_rel DnaQ family 96.8 0.039 1E-06 34.5 10.9 513 147-690 259-904 (944)
167 cd01369 KISc_KHC_KIF5 Kinesin 96.7 0.0018 4.5E-08 44.6 3.9 87 139-233 43-138 (325)
168 TIGR03015 pepcterm_ATPase puta 96.7 0.012 3.1E-07 38.3 8.2 73 147-219 22-97 (269)
169 COG2804 PulE Type II secretory 96.7 0.011 2.9E-07 38.6 7.8 94 150-277 240-335 (500)
170 cd01367 KISc_KIF2_like Kinesin 96.6 0.0044 1.1E-07 41.6 5.3 84 139-233 51-141 (322)
171 KOG0925 consensus 96.6 0.07 1.8E-06 32.6 13.9 147 153-346 51-206 (699)
172 PRK07952 DNA replication prote 96.5 0.044 1.1E-06 34.1 9.8 65 151-220 76-146 (242)
173 cd00106 KISc Kinesin motor dom 96.5 0.0077 2E-07 39.8 5.9 86 139-235 45-140 (328)
174 pfam00225 Kinesin Kinesin moto 96.5 0.014 3.5E-07 38.0 7.1 84 139-233 40-132 (321)
175 smart00492 HELICc3 helicase su 96.5 0.024 6.1E-07 36.1 8.2 74 616-689 31-135 (141)
176 KOG0384 consensus 96.5 0.085 2.2E-06 32.0 24.9 444 120-708 346-824 (1373)
177 PRK05703 flhF flagellar biosyn 96.4 0.062 1.6E-06 33.0 10.0 86 169-303 211-301 (412)
178 TIGR00963 secA preprotein tran 96.4 0.0077 2E-07 39.8 5.4 98 556-658 409-508 (904)
179 cd01376 KISc_KID_like Kinesin 96.4 0.0087 2.2E-07 39.4 5.5 84 139-233 47-137 (319)
180 TIGR03499 FlhF flagellar biosy 96.3 0.017 4.3E-07 37.2 6.8 23 169-191 195-217 (282)
181 smart00129 KISc Kinesin motor, 96.3 0.0066 1.7E-07 40.3 4.7 85 139-234 46-139 (335)
182 cd01374 KISc_CENP_E Kinesin mo 96.3 0.008 2E-07 39.7 5.1 84 139-233 40-131 (321)
183 PRK10436 hypothetical protein; 96.3 0.037 9.5E-07 34.7 8.5 89 153-277 200-292 (461)
184 cd01365 KISc_KIF1A_KIF1B Kines 96.2 0.014 3.5E-07 37.9 5.9 72 151-233 67-148 (356)
185 pfam07652 Flavi_DEAD Flaviviru 96.1 0.0045 1.1E-07 41.5 2.9 129 170-344 4-137 (146)
186 KOG1002 consensus 96.1 0.14 3.5E-06 30.4 25.3 137 563-704 617-758 (791)
187 COG4098 comFA Superfamily II D 96.0 0.088 2.2E-06 31.9 9.2 133 556-706 118-256 (441)
188 TIGR01420 pilT_fam twitching m 96.0 0.048 1.2E-06 33.9 7.8 167 155-396 117-298 (350)
189 KOG0242 consensus 96.0 0.015 3.9E-07 37.6 5.2 85 139-232 53-143 (675)
190 PRK08939 primosomal protein Dn 96.0 0.061 1.5E-06 33.1 8.2 63 153-220 137-207 (306)
191 COG3973 Superfamily I DNA and 96.0 0.028 7.1E-07 35.6 6.4 65 152-223 216-289 (747)
192 cd01129 PulE-GspE PulE/GspE Th 96.0 0.04 1E-06 34.4 7.2 39 152-193 67-105 (264)
193 COG1110 Reverse gyrase [DNA re 96.0 0.02 5.1E-07 36.7 5.6 61 592-657 348-412 (1187)
194 TIGR00348 hsdR type I site-spe 96.0 0.058 1.5E-06 33.2 8.0 107 99-217 258-379 (813)
195 cd01375 KISc_KIF9_like Kinesin 95.8 0.014 3.5E-07 38.0 4.2 86 140-234 49-142 (334)
196 PRK08116 hypothetical protein; 95.8 0.051 1.3E-06 33.6 7.1 68 147-219 81-157 (262)
197 TIGR03600 phage_DnaB phage rep 95.8 0.17 4.4E-06 29.7 9.8 63 155-219 182-248 (421)
198 pfam00580 UvrD-helicase UvrD/R 95.8 0.039 9.8E-07 34.6 6.4 62 152-220 4-72 (494)
199 cd00268 DEADc DEAD-box helicas 95.8 0.18 4.5E-06 29.6 10.7 112 582-702 69-193 (203)
200 pfam03796 DnaB_C DnaB-like hel 95.7 0.039 9.9E-07 34.5 6.3 62 156-219 8-73 (186)
201 cd01393 recA_like RecA is a b 95.7 0.042 1.1E-06 34.3 6.4 55 156-211 7-71 (226)
202 KOG1803 consensus 95.7 0.021 5.5E-07 36.5 4.8 58 153-214 190-250 (649)
203 PRK10919 ATP-dependent DNA hel 95.7 0.027 6.8E-07 35.7 5.3 70 152-228 6-87 (672)
204 KOG0243 consensus 95.7 0.0071 1.8E-07 40.0 2.3 94 139-235 95-195 (1041)
205 PRK06835 DNA replication prote 95.7 0.16 4.2E-06 29.9 9.3 51 163-218 178-232 (330)
206 pfam06745 KaiC KaiC. This fami 95.6 0.2 5E-06 29.2 9.9 59 156-216 7-70 (231)
207 cd01371 KISc_KIF3 Kinesin moto 95.6 0.0097 2.5E-07 39.1 2.9 87 139-233 48-142 (333)
208 cd01394 radB RadB. The archaea 95.6 0.09 2.3E-06 31.8 7.7 53 156-209 7-63 (218)
209 pfam00437 GSPII_E Type II/IV s 95.6 0.14 3.7E-06 30.3 8.7 45 150-194 121-165 (283)
210 PRK09354 recA recombinase A; P 95.6 0.07 1.8E-06 32.6 7.1 92 162-282 55-151 (350)
211 KOG0247 consensus 95.5 0.012 3.1E-07 38.4 2.9 54 139-193 81-140 (809)
212 cd01373 KISc_KLP2_like Kinesin 95.5 0.0095 2.4E-07 39.1 2.4 91 140-233 42-145 (337)
213 PRK06995 flhF flagellar biosyn 95.3 0.1 2.5E-06 31.5 7.3 84 170-302 178-266 (404)
214 pfam00154 RecA recA bacterial 95.3 0.083 2.1E-06 32.1 6.9 51 162-213 47-100 (322)
215 PRK12726 flagellar biosynthesi 95.3 0.026 6.6E-07 35.8 4.2 34 169-202 207-243 (407)
216 cd00983 recA RecA is a bacter 95.3 0.12 3.1E-06 30.8 7.6 51 162-213 50-103 (325)
217 COG3972 Superfamily I DNA and 95.3 0.018 4.7E-07 37.0 3.3 104 589-709 484-591 (660)
218 PRK06731 flhF flagellar biosyn 95.3 0.21 5.4E-06 29.0 8.7 93 79-202 7-112 (270)
219 KOG0388 consensus 95.2 0.27 6.8E-06 28.3 12.2 119 566-689 1028-1148(1185)
220 pfam00308 Bac_DnaA Bacterial d 95.2 0.28 7.1E-06 28.1 9.8 96 168-281 34-141 (219)
221 TIGR02533 type_II_gspE general 95.1 0.23 5.8E-06 28.8 8.6 93 151-277 228-322 (495)
222 COG2805 PilT Tfp pilus assembl 95.1 0.13 3.4E-06 30.5 7.4 138 154-357 114-263 (353)
223 PRK11784 tRNA 2-selenouridine 95.1 0.036 9.1E-07 34.8 4.4 52 158-219 129-180 (333)
224 PRK12727 flagellar biosynthesi 95.1 0.29 7.3E-06 28.0 9.9 97 583-691 380-493 (557)
225 PRK11054 helD DNA helicase IV; 95.1 0.053 1.3E-06 33.5 5.2 70 152-228 200-278 (684)
226 cd01122 GP4d_helicase GP4d_hel 95.0 0.041 1E-06 34.4 4.5 62 156-219 19-84 (271)
227 smart00491 HELICc2 helicase su 95.0 0.2 5.1E-06 29.2 8.0 74 616-689 28-136 (142)
228 COG1201 Lhr Lhr-like helicases 95.0 0.25 6.4E-06 28.5 8.5 58 153-215 27-95 (814)
229 PRK12377 putative replication 95.0 0.16 4.2E-06 29.9 7.5 63 152-219 82-150 (248)
230 KOG0245 consensus 94.9 0.024 6.1E-07 36.1 3.0 95 112-232 44-148 (1221)
231 cd01127 TrwB Bacterial conjuga 94.9 0.057 1.4E-06 33.3 4.9 39 168-206 42-83 (410)
232 smart00382 AAA ATPases associa 94.8 0.31 8E-06 27.8 8.6 45 169-213 3-50 (148)
233 TIGR02639 ClpA ATP-dependent C 94.8 0.062 1.6E-06 33.0 4.9 116 72-192 105-256 (774)
234 cd00984 DnaB_C DnaB helicase C 94.8 0.095 2.4E-06 31.6 5.8 60 157-218 3-66 (242)
235 COG1484 DnaC DNA replication p 94.8 0.17 4.3E-06 29.7 7.1 67 147-220 83-155 (254)
236 KOG1805 consensus 94.8 0.047 1.2E-06 33.9 4.2 125 150-303 671-809 (1100)
237 PRK08006 replicative DNA helic 94.7 0.35 8.9E-06 27.4 10.2 63 155-219 212-278 (471)
238 PRK13767 ATP-dependent helicas 94.7 0.32 8.2E-06 27.7 8.4 121 148-302 32-184 (878)
239 pfam01695 IstB IstB-like ATP b 94.7 0.36 9.2E-06 27.3 9.0 61 153-219 31-96 (178)
240 cd03115 SRP The signal recogni 94.6 0.39 9.8E-06 27.1 8.9 32 171-202 3-37 (173)
241 PRK06921 hypothetical protein; 94.5 0.27 6.8E-06 28.3 7.7 46 167-217 115-164 (265)
242 TIGR02759 TraD_Ftype type IV c 94.5 0.039 9.9E-07 34.5 3.4 31 169-199 209-242 (613)
243 pfam10412 TrwB_AAD_bind Type I 94.5 0.085 2.2E-06 32.0 5.1 43 166-208 13-58 (386)
244 KOG0239 consensus 94.5 0.048 1.2E-06 33.8 3.7 17 644-660 476-492 (670)
245 PRK11889 flhF flagellar biosyn 94.5 0.41 1E-05 26.9 10.9 109 153-312 216-342 (436)
246 TIGR03346 chaperone_ClpB ATP-d 94.5 0.13 3.2E-06 30.7 5.8 39 153-191 178-217 (852)
247 TIGR03167 tRNA_sel_U_synt tRNA 94.4 0.069 1.8E-06 32.7 4.5 46 166-219 125-170 (311)
248 KOG4280 consensus 94.4 0.045 1.1E-06 34.1 3.5 84 139-232 52-144 (574)
249 KOG0240 consensus 94.4 0.13 3.2E-06 30.7 5.7 86 139-232 49-143 (607)
250 cd01131 PilT Pilus retraction 94.4 0.25 6.5E-06 28.4 7.2 32 171-202 4-37 (198)
251 pfam01935 DUF87 Domain of unkn 94.3 0.06 1.5E-06 33.1 4.0 34 169-202 24-61 (218)
252 TIGR00631 uvrb excinuclease AB 94.3 0.36 9.1E-06 27.3 7.9 286 8-400 242-599 (667)
253 COG3604 FhlA Transcriptional r 94.3 0.18 4.5E-06 29.6 6.3 92 153-303 228-330 (550)
254 PRK04537 ATP-dependent RNA hel 94.3 0.44 1.1E-05 26.6 11.2 161 149-354 32-215 (574)
255 cd01363 Motor_domain Myosin an 94.3 0.026 6.6E-07 35.9 2.0 31 157-187 12-43 (186)
256 PRK06645 DNA polymerase III su 94.2 0.073 1.9E-06 32.5 4.2 111 153-303 26-141 (507)
257 COG3857 AddB ATP-dependent nuc 94.1 0.19 4.8E-06 29.4 6.1 10 671-680 944-953 (1108)
258 PRK08727 hypothetical protein; 94.1 0.48 1.2E-05 26.4 10.0 107 155-281 27-137 (233)
259 KOG0389 consensus 94.0 0.49 1.3E-05 26.3 20.0 120 565-689 760-884 (941)
260 cd01126 TraG_VirD4 The TraG/Tr 94.0 0.35 8.8E-06 27.4 7.3 53 170-225 1-55 (384)
261 KOG0921 consensus 94.0 0.13 3.2E-06 30.7 5.0 85 606-690 674-771 (1282)
262 PRK13894 conjugal transfer ATP 93.9 0.51 1.3E-05 26.1 8.2 32 160-192 142-173 (320)
263 PRK13851 type IV secretion sys 93.9 0.5 1.3E-05 26.2 8.0 87 160-278 155-245 (343)
264 TIGR00595 priA primosomal prot 93.9 0.012 3E-07 38.4 -0.3 113 381-540 156-272 (524)
265 PRK12723 flagellar biosynthesi 93.9 0.4 1E-05 27.0 7.4 24 169-192 175-198 (388)
266 TIGR03345 VI_ClpV1 type VI sec 93.8 0.18 4.6E-06 29.6 5.6 45 147-191 186-231 (852)
267 KOG0246 consensus 93.8 0.029 7.3E-07 35.5 1.5 43 141-185 260-309 (676)
268 PRK06067 flagellar accessory p 93.8 0.44 1.1E-05 26.6 7.5 58 157-216 21-82 (241)
269 CHL00095 clpC Clp protease ATP 93.7 0.18 4.7E-06 29.5 5.5 39 153-191 184-223 (823)
270 cd00009 AAA The AAA+ (ATPases 93.7 0.41 1E-05 26.9 7.2 42 152-193 2-44 (151)
271 PRK13833 conjugal transfer pro 93.6 0.57 1.5E-05 25.8 8.2 83 159-279 136-225 (323)
272 cd01123 Rad51_DMC1_radA Rad51_ 93.6 0.52 1.3E-05 26.1 7.7 39 155-194 6-45 (235)
273 COG0513 SrmB Superfamily II DN 93.6 0.57 1.5E-05 25.8 11.3 160 148-352 51-226 (513)
274 PRK08769 DNA polymerase III su 93.6 0.18 4.6E-06 29.6 5.3 47 144-192 2-50 (319)
275 PRK10865 protein disaggregatio 93.6 0.19 4.9E-06 29.3 5.4 65 153-217 183-263 (857)
276 PRK09361 radB DNA repair and r 93.5 0.55 1.4E-05 25.9 7.7 47 155-202 10-60 (224)
277 KOG0701 consensus 93.5 0.027 6.9E-07 35.7 1.0 77 618-699 707-796 (1606)
278 TIGR03029 EpsG chain length de 93.5 0.17 4.3E-06 29.7 5.0 64 140-203 70-142 (274)
279 PRK06893 DNA replication initi 93.4 0.45 1.1E-05 26.6 7.1 106 151-278 21-133 (229)
280 PRK12402 replication factor C 93.4 0.22 5.7E-06 28.9 5.5 40 153-192 20-60 (337)
281 pfam02562 PhoH PhoH-like prote 93.3 0.23 5.9E-06 28.8 5.4 132 152-316 8-144 (205)
282 PRK08082 consensus 93.3 0.4 1E-05 27.0 6.6 63 155-219 191-257 (453)
283 COG1474 CDC6 Cdc6-related prot 93.3 0.58 1.5E-05 25.7 7.4 67 152-218 24-98 (366)
284 COG3267 ExeA Type II secretory 93.2 0.58 1.5E-05 25.7 7.4 61 152-212 35-97 (269)
285 COG1519 KdtA 3-deoxy-D-manno-o 93.2 0.66 1.7E-05 25.3 8.0 45 171-220 52-101 (419)
286 COG0542 clpA ATP-binding subun 93.2 0.22 5.5E-06 28.9 5.2 45 147-191 169-214 (786)
287 PRK00440 rfc replication facto 93.1 0.2 5.2E-06 29.1 4.9 40 153-192 21-61 (318)
288 PRK13700 conjugal transfer pro 93.1 0.14 3.5E-06 30.5 4.0 39 169-207 186-227 (732)
289 TIGR02640 gas_vesic_GvpN gas v 93.1 0.14 3.5E-06 30.4 4.0 61 154-215 4-69 (265)
290 TIGR02782 TrbB_P P-type conjug 93.0 0.38 9.7E-06 27.1 6.2 48 155-224 127-175 (315)
291 PRK08084 DNA replication initi 93.0 0.71 1.8E-05 25.1 11.4 111 147-280 24-141 (235)
292 PRK05748 replicative DNA helic 92.9 0.73 1.9E-05 25.0 9.4 63 155-219 191-257 (448)
293 COG0210 UvrD Superfamily I DNA 92.9 0.44 1.1E-05 26.6 6.3 50 169-218 16-72 (655)
294 COG0468 RecA RecA/RadA recombi 92.9 0.74 1.9E-05 24.9 7.7 107 155-292 47-160 (279)
295 pfam00004 AAA ATPase family as 92.8 0.47 1.2E-05 26.5 6.4 30 172-201 2-31 (131)
296 PRK05541 adenylylsulfate kinas 92.7 0.46 1.2E-05 26.5 6.2 78 169-282 8-89 (176)
297 PRK00149 dnaA chromosomal repl 92.7 0.78 2E-05 24.8 9.1 126 168-346 145-282 (447)
298 TIGR01389 recQ ATP-dependent D 92.6 0.58 1.5E-05 25.7 6.7 90 176-297 194-301 (607)
299 KOG1802 consensus 92.6 0.29 7.4E-06 28.0 5.1 63 142-215 410-476 (935)
300 pfam10236 DAP3 Mitochondrial r 92.5 0.4 1E-05 27.0 5.7 47 156-202 10-59 (274)
301 TIGR03420 DnaA_homol_Hda DnaA 92.3 0.86 2.2E-05 24.5 10.1 107 151-280 20-133 (226)
302 PRK04328 hypothetical protein; 92.3 0.42 1.1E-05 26.8 5.7 59 157-218 13-75 (250)
303 PRK06762 hypothetical protein; 92.3 0.83 2.1E-05 24.6 7.1 31 170-200 4-34 (166)
304 PRK11773 uvrD DNA-dependent he 92.3 0.16 4E-06 30.0 3.4 70 152-228 13-93 (722)
305 pfam00448 SRP54 SRP54-type pro 92.3 0.87 2.2E-05 24.4 9.2 33 170-202 3-38 (196)
306 PRK07667 uridine kinase; Provi 92.2 0.53 1.4E-05 26.0 6.1 35 173-207 19-56 (190)
307 pfam08423 Rad51 Rad51. Rad51 i 92.2 0.64 1.6E-05 25.4 6.5 36 155-191 30-66 (261)
308 TIGR02538 type_IV_pilB type IV 92.1 0.21 5.4E-06 29.0 3.9 45 147-196 310-354 (577)
309 cd01124 KaiC KaiC is a circadi 92.0 0.94 2.4E-05 24.2 10.2 45 171-216 2-49 (187)
310 PRK08840 replicative DNA helic 91.9 0.59 1.5E-05 25.7 6.0 63 155-219 205-271 (464)
311 PRK07263 consensus 91.9 0.62 1.6E-05 25.5 6.1 62 155-218 191-256 (453)
312 PHA00350 putative assembly pro 91.8 0.13 3.2E-06 30.7 2.5 53 170-227 3-62 (402)
313 TIGR02773 addB_Gpos ATP-depend 91.8 0.25 6.4E-06 28.5 4.1 47 170-217 3-55 (1192)
314 PRK08694 consensus 91.8 0.68 1.7E-05 25.2 6.2 63 155-219 206-272 (468)
315 TIGR01313 therm_gnt_kin carboh 91.7 0.13 3.2E-06 30.7 2.4 22 171-192 1-22 (175)
316 COG0593 DnaA ATPase involved i 91.7 1 2.6E-05 24.0 10.8 143 150-346 94-249 (408)
317 PRK09183 transposase/IS protei 91.6 0.68 1.7E-05 25.2 6.0 61 153-219 85-150 (258)
318 pfam01745 IPT Isopentenyl tran 91.6 0.23 5.8E-06 28.8 3.6 40 170-214 3-42 (232)
319 PRK09302 circadian clock prote 91.6 1 2.6E-05 23.9 9.5 111 157-282 13-136 (501)
320 cd01130 VirB11-like_ATPase Typ 91.5 0.57 1.5E-05 25.8 5.6 37 156-193 14-50 (186)
321 PRK08903 hypothetical protein; 91.5 0.89 2.3E-05 24.3 6.5 53 151-203 23-80 (227)
322 PRK12323 DNA polymerase III su 91.5 0.51 1.3E-05 26.2 5.3 110 153-303 21-137 (721)
323 PRK11034 clpA ATP-dependent Cl 91.4 0.23 5.9E-06 28.7 3.5 39 153-191 191-230 (758)
324 COG0714 MoxR-like ATPases [Gen 91.3 0.75 1.9E-05 24.9 6.0 60 153-213 29-89 (329)
325 PRK08691 DNA polymerase III su 91.2 0.46 1.2E-05 26.5 4.9 38 153-191 21-60 (704)
326 PRK06526 transposase; Provisio 91.2 1.1 2.9E-05 23.6 8.0 61 153-219 82-147 (254)
327 PRK08506 replicative DNA helic 91.2 0.82 2.1E-05 24.6 6.1 63 155-219 181-246 (473)
328 TIGR00064 ftsY signal recognit 91.1 0.24 6.2E-06 28.6 3.3 75 143-218 54-137 (284)
329 PTZ00301 uridine kinase; Provi 91.0 1.2 2.9E-05 23.5 6.9 75 173-272 8-85 (210)
330 PRK08533 flagellar accessory p 91.0 1 2.6E-05 23.9 6.4 59 159-220 16-77 (230)
331 TIGR02237 recomb_radB DNA repa 91.0 1.2 3E-05 23.5 7.6 114 163-356 8-124 (223)
332 PRK08760 replicative DNA helic 90.9 1 2.6E-05 23.8 6.4 63 155-219 217-283 (476)
333 PRK07764 DNA polymerase III su 90.8 0.59 1.5E-05 25.7 5.1 110 153-303 20-133 (775)
334 PRK05595 replicative DNA helic 90.8 1.2 3E-05 23.4 6.6 63 155-219 189-255 (444)
335 PRK07004 replicative DNA helic 90.7 0.99 2.5E-05 24.0 6.2 63 155-219 201-267 (460)
336 PRK08770 DNA polymerase III su 90.7 0.6 1.5E-05 25.6 5.0 106 153-303 21-132 (663)
337 PRK04195 replication factor C 90.7 1.1 2.9E-05 23.6 6.4 43 153-195 19-67 (403)
338 PRK06749 replicative DNA helic 90.6 1.1 2.7E-05 23.8 6.2 62 155-218 174-238 (428)
339 PRK00139 murE UDP-N-acetylmura 90.4 0.72 1.8E-05 25.0 5.2 47 152-198 80-131 (481)
340 PRK12724 flagellar biosynthesi 90.4 1 2.7E-05 23.8 6.0 31 169-199 224-258 (432)
341 KOG0244 consensus 90.2 0.38 9.7E-06 27.1 3.7 59 130-188 23-86 (913)
342 PRK13900 type IV secretion sys 90.2 1.4 3.5E-05 23.0 8.6 95 158-279 151-245 (332)
343 COG5008 PilU Tfp pilus assembl 90.2 1.1 2.9E-05 23.5 6.1 94 153-279 115-210 (375)
344 PRK08181 transposase; Validate 90.1 1.4 3.5E-05 23.0 7.4 66 147-219 84-155 (269)
345 PRK06696 uridine kinase; Valid 90.1 1.1 2.7E-05 23.8 5.8 59 150-208 4-69 (227)
346 COG0630 VirB11 Type IV secreto 90.0 1.4 3.6E-05 22.9 8.9 97 153-278 129-226 (312)
347 COG1419 FlhF Flagellar GTP-bin 89.9 1.4 3.6E-05 22.8 11.9 141 153-346 183-328 (407)
348 PRK06872 DNA polymerase III su 89.8 0.65 1.7E-05 25.3 4.6 38 153-191 21-60 (696)
349 PRK05642 DNA replication initi 89.7 1.5 3.8E-05 22.7 12.0 109 151-281 24-141 (234)
350 PRK13830 conjugal transfer pro 89.6 0.94 2.4E-05 24.2 5.3 38 419-456 355-394 (818)
351 PRK13891 conjugal transfer pro 89.6 0.99 2.5E-05 24.0 5.4 26 420-445 387-412 (852)
352 cd01120 RecA-like_NTPases RecA 89.6 1.5 3.8E-05 22.7 9.2 44 171-215 2-48 (165)
353 PRK10416 cell division protein 89.5 1.5 3.9E-05 22.6 8.7 23 673-695 404-426 (499)
354 PRK06321 replicative DNA helic 89.5 1.4 3.7E-05 22.8 6.2 63 154-218 213-279 (472)
355 TIGR02785 addA_Gpos recombinat 89.4 0.34 8.7E-06 27.5 2.9 37 172-216 588-625 (1295)
356 KOG2543 consensus 89.3 0.59 1.5E-05 25.7 4.0 49 154-202 12-64 (438)
357 PRK09825 idnK D-gluconate kina 89.1 0.61 1.5E-05 25.6 4.0 27 169-195 4-30 (176)
358 PRK05636 replicative DNA helic 89.1 1.6 4.1E-05 22.4 6.5 63 155-219 255-321 (507)
359 TIGR02524 dot_icm_DotB Dot/Icm 89.0 0.79 2E-05 24.7 4.6 91 158-277 124-220 (358)
360 KOG1808 consensus 89.0 0.94 2.4E-05 24.2 4.9 67 145-211 417-484 (1856)
361 cd02021 GntK Gluconate kinase 88.9 0.49 1.3E-05 26.3 3.5 23 171-193 2-24 (150)
362 COG3451 VirB4 Type IV secretor 88.9 1.7 4.3E-05 22.3 6.9 23 170-192 438-460 (796)
363 PRK11930 putative bifunctional 88.5 1.8 4.5E-05 22.1 6.3 38 140-184 86-124 (824)
364 pfam00006 ATP-synt_ab ATP synt 88.5 1.8 4.5E-05 22.1 8.3 54 165-219 13-66 (213)
365 PRK00091 miaA tRNA delta(2)-is 88.4 0.67 1.7E-05 25.3 3.9 41 168-213 4-44 (304)
366 COG0552 FtsY Signal recognitio 88.4 0.64 1.6E-05 25.4 3.8 39 169-207 140-181 (340)
367 TIGR02621 cas3_GSU0051 CRISPR- 88.3 0.17 4.4E-06 29.7 0.8 97 582-686 311-427 (975)
368 PRK06904 replicative DNA helic 88.3 1.8 4.6E-05 22.0 9.1 63 155-219 209-275 (472)
369 PRK10536 hypothetical protein; 88.3 1.8 4.7E-05 22.0 10.1 136 152-319 63-204 (262)
370 COG1221 PspF Transcriptional r 88.2 1.1 2.9E-05 23.6 4.9 70 154-225 88-159 (403)
371 KOG0736 consensus 88.2 1.5 3.7E-05 22.7 5.5 118 153-289 406-551 (953)
372 PRK09165 replicative DNA helic 87.9 1.9 4.9E-05 21.9 6.1 63 155-219 193-273 (484)
373 TIGR01074 rep ATP-dependent DN 87.9 0.36 9.1E-06 27.3 2.2 59 153-219 8-70 (677)
374 pfam06414 Zeta_toxin Zeta toxi 87.8 0.91 2.3E-05 24.3 4.2 42 169-219 13-55 (191)
375 PRK06305 DNA polymerase III su 87.8 1.1 2.9E-05 23.5 4.7 109 153-303 22-134 (462)
376 PRK07003 DNA polymerase III su 87.6 1.3 3.4E-05 23.0 5.0 38 153-191 21-60 (816)
377 pfam01580 FtsK_SpoIIIE FtsK/Sp 87.6 0.42 1.1E-05 26.8 2.4 36 169-204 39-80 (202)
378 pfam01949 DUF99 Protein of unk 87.6 2 5.1E-05 21.7 6.2 68 152-219 47-116 (185)
379 PRK08058 DNA polymerase III su 87.5 1.4 3.7E-05 22.8 5.1 44 149-192 7-52 (329)
380 PRK11545 gntK gluconate kinase 87.2 0.87 2.2E-05 24.4 3.8 26 169-194 9-34 (177)
381 COG2204 AtoC Response regulato 87.2 2.1 5.3E-05 21.6 7.4 65 153-221 146-217 (464)
382 PRK00771 signal recognition pa 87.2 2.1 5.3E-05 21.6 12.1 126 75-227 20-158 (433)
383 COG5059 KIP1 Kinesin-like prot 87.1 0.45 1.2E-05 26.5 2.4 81 141-232 58-147 (568)
384 TIGR00376 TIGR00376 DNA helica 87.1 2.1 5.4E-05 21.5 7.6 119 100-224 151-279 (709)
385 pfam10593 Z1 Z1 domain. This u 87.1 1.7 4.3E-05 22.3 5.3 92 630-729 125-221 (231)
386 PRK04301 radA DNA repair and r 87.0 2.1 5.4E-05 21.5 9.6 37 155-192 90-127 (318)
387 cd02024 NRK1 Nicotinamide ribo 87.0 0.75 1.9E-05 24.9 3.4 41 173-241 4-44 (187)
388 PRK08233 hypothetical protein; 86.9 0.6 1.5E-05 25.6 2.9 22 172-193 7-28 (182)
389 PRK05917 DNA polymerase III su 86.7 1.3 3.4E-05 23.1 4.6 40 153-192 2-43 (290)
390 PRK13889 conjugal transfer rel 86.7 2.2 5.6E-05 21.4 8.5 53 146-202 344-399 (992)
391 TIGR00382 clpX ATP-dependent C 86.7 0.76 1.9E-05 24.9 3.3 41 155-196 140-180 (452)
392 COG0464 SpoVK ATPases of the A 86.7 2.2 5.6E-05 21.4 5.8 23 169-191 19-41 (494)
393 TIGR01143 murF UDP-N-acetylmur 86.7 0.75 1.9E-05 24.9 3.3 43 152-194 63-111 (462)
394 PRK07133 DNA polymerase III su 86.6 1.7 4.3E-05 22.3 5.0 116 153-314 23-144 (718)
395 TIGR00455 apsK adenylylsulfate 86.6 0.88 2.3E-05 24.4 3.6 33 166-199 15-53 (187)
396 COG1074 RecB ATP-dependent exo 86.3 2 5E-05 21.8 5.3 26 635-660 744-769 (1139)
397 PRK10867 signal recognition pa 86.3 2.3 5.9E-05 21.2 12.7 57 171-228 103-163 (453)
398 COG0529 CysC Adenylylsulfate k 86.2 1.2 2.9E-05 23.5 4.0 31 169-200 24-58 (197)
399 PRK13826 Dtr system oriT relax 86.2 2.3 5.9E-05 21.2 7.9 131 147-288 380-517 (1102)
400 smart00242 MYSc Myosin. Large 86.2 1.4 3.6E-05 22.8 4.5 33 155-190 81-114 (677)
401 TIGR00603 rad25 DNA repair hel 86.1 1.1 2.7E-05 23.8 3.8 113 153-301 274-401 (756)
402 COG4962 CpaF Flp pilus assembl 86.1 1.5 3.9E-05 22.5 4.6 97 152-280 161-259 (355)
403 PTZ00112 origin recognition co 86.0 1 2.7E-05 23.8 3.7 16 522-537 292-307 (650)
404 PRK13873 conjugal transfer ATP 86.0 1.7 4.2E-05 22.3 4.7 36 421-456 345-382 (815)
405 PRK11331 5-methylcytosine-spec 86.0 2.1 5.3E-05 21.6 5.3 35 157-192 184-218 (459)
406 pfam01443 Viral_helicase1 Vira 85.9 0.79 2E-05 24.7 3.1 29 172-203 2-30 (226)
407 PRK03846 adenylylsulfate kinas 85.7 1.1 2.8E-05 23.7 3.7 76 169-279 25-104 (198)
408 PRK05342 clpX ATP-dependent pr 85.7 1 2.6E-05 23.9 3.6 31 169-199 110-140 (411)
409 PRK10876 recB exonuclease V su 85.7 1.3 3.4E-05 23.0 4.1 35 182-217 427-461 (1181)
410 PRK00889 adenylylsulfate kinas 85.6 1.1 2.9E-05 23.6 3.8 81 166-282 3-87 (175)
411 TIGR01846 type_I_sec_HlyB type 85.2 2.6 6.6E-05 20.9 6.4 95 94-192 409-514 (703)
412 COG3421 Uncharacterized protei 85.2 0.36 9.2E-06 27.3 1.0 32 174-205 3-38 (812)
413 pfam01583 APS_kinase Adenylyls 85.2 1.6 4E-05 22.5 4.3 79 169-282 3-85 (157)
414 COG0324 MiaA tRNA delta(2)-iso 84.9 1.3 3.4E-05 23.1 3.8 40 169-213 4-43 (308)
415 pfam00485 PRK Phosphoribulokin 84.7 2.7 7E-05 20.7 5.8 23 172-194 3-25 (196)
416 TIGR00929 VirB4_CagE type IV s 84.6 0.84 2.1E-05 24.5 2.7 53 136-194 490-542 (931)
417 PRK09270 frcK putative fructos 84.6 2.8 7E-05 20.7 8.9 48 140-192 6-58 (230)
418 cd00124 MYSc Myosin motor doma 84.6 1.9 4.9E-05 21.8 4.6 33 155-190 75-108 (679)
419 COG1444 Predicted P-loop ATPas 84.5 2.8 7.1E-05 20.6 7.7 70 148-217 211-285 (758)
420 PRK07399 DNA polymerase III su 84.4 2.4 6.2E-05 21.1 5.0 41 152-192 8-50 (314)
421 TIGR00609 recB exodeoxyribonuc 84.3 1.8 4.7E-05 22.0 4.3 153 169-333 10-193 (1324)
422 pfam01121 CoaE Dephospho-CoA k 84.2 0.93 2.4E-05 24.2 2.8 47 173-220 5-55 (179)
423 PRK05201 hslU ATP-dependent pr 84.1 1.4 3.6E-05 22.8 3.7 31 169-199 51-81 (442)
424 pfam02534 TraG TraG/TraD famil 84.1 2.9 7.4E-05 20.5 6.2 57 166-225 42-100 (468)
425 TIGR02788 VirB11 P-type DNA tr 84.0 1.6 4.2E-05 22.4 4.0 58 160-229 151-213 (328)
426 TIGR02868 CydC ABC transporter 84.0 0.7 1.8E-05 25.1 2.1 83 141-228 363-450 (566)
427 PRK08451 DNA polymerase III su 83.9 2.8 7.1E-05 20.6 5.1 40 153-192 19-60 (523)
428 pfam00063 Myosin_head Myosin h 83.9 2.3 5.8E-05 21.3 4.7 34 154-190 73-107 (679)
429 cd02027 APSK Adenosine 5'-phos 83.7 1.5 3.9E-05 22.6 3.7 77 171-282 2-82 (149)
430 PRK07994 DNA polymerase III su 83.6 2.4 6.1E-05 21.2 4.7 38 153-191 21-60 (643)
431 pfam07728 AAA_5 AAA domain (dy 83.5 0.89 2.3E-05 24.3 2.5 29 171-199 2-31 (139)
432 TIGR02142 modC_ABC molybdate A 83.5 1.1 2.9E-05 23.6 3.0 115 140-347 11-129 (361)
433 PRK05537 bifunctional sulfate 83.5 3 7.7E-05 20.4 5.2 99 576-687 359-468 (568)
434 COG1435 Tdk Thymidine kinase [ 83.3 2.6 6.6E-05 20.9 4.8 51 171-234 7-60 (201)
435 cd01381 MYSc_type_VII Myosin m 83.3 2.4 6.1E-05 21.1 4.6 35 154-191 74-109 (671)
436 KOG2373 consensus 83.3 0.52 1.3E-05 26.1 1.2 39 186-225 135-173 (514)
437 COG0467 RAD55 RecA-superfamily 82.9 2 5.2E-05 21.7 4.1 61 157-220 12-76 (260)
438 cd01378 MYSc_type_I Myosin mot 82.9 2.5 6.5E-05 20.9 4.6 32 156-190 76-108 (674)
439 cd01385 MYSc_type_IX Myosin mo 82.9 2.5 6.5E-05 20.9 4.6 33 155-190 83-116 (692)
440 cd01384 MYSc_type_XI Myosin mo 82.8 2.6 6.6E-05 20.9 4.6 33 155-190 77-110 (674)
441 PRK05896 DNA polymerase III su 82.8 3.1 7.8E-05 20.3 5.0 40 153-192 21-62 (613)
442 TIGR03453 partition_RepA plasm 82.7 3.2 8.3E-05 20.1 8.1 93 98-219 44-153 (387)
443 pfam07726 AAA_3 ATPase family 82.5 1.8 4.5E-05 22.1 3.6 30 170-199 1-30 (131)
444 COG1219 ClpX ATP-dependent pro 82.4 1.8 4.7E-05 22.0 3.7 31 166-196 95-125 (408)
445 PRK05564 DNA polymerase III su 82.2 3.2 8.2E-05 20.2 4.9 39 153-191 9-49 (313)
446 PRK13898 type IV secretion sys 82.2 1.1 2.8E-05 23.7 2.5 56 629-691 587-649 (800)
447 PRK09111 DNA polymerase III su 82.1 3.3 8.3E-05 20.1 4.9 106 153-304 28-145 (600)
448 PRK11929 putative bifunctional 81.8 3.5 8.9E-05 19.9 6.1 47 152-198 91-142 (953)
449 cd01377 MYSc_type_II Myosin mo 81.8 2.9 7.3E-05 20.5 4.5 33 155-190 80-113 (693)
450 KOG3308 consensus 81.7 2.5 6.5E-05 21.0 4.2 51 173-251 9-60 (225)
451 KOG0745 consensus 81.7 1.8 4.5E-05 22.1 3.4 39 168-207 226-264 (564)
452 pfam03237 Terminase_6 Terminas 81.5 3.6 9.1E-05 19.8 6.0 47 172-218 1-53 (380)
453 PRK13869 plasmid-partitioning 81.3 3.6 9.2E-05 19.8 8.2 92 98-218 59-169 (405)
454 cd01379 MYSc_type_III Myosin m 81.3 3 7.6E-05 20.4 4.4 35 154-190 74-108 (653)
455 PRK07940 DNA polymerase III su 81.0 3.5 9E-05 19.9 4.7 40 153-192 10-63 (395)
456 cd02025 PanK Pantothenate kina 81.0 3.7 9.5E-05 19.7 6.2 18 173-191 4-21 (220)
457 cd01387 MYSc_type_XV Myosin mo 80.9 3.6 9.3E-05 19.8 4.8 35 154-190 75-109 (677)
458 COG2607 Predicted ATPase (AAA+ 80.7 3.8 9.7E-05 19.6 10.3 152 152-348 67-233 (287)
459 TIGR03375 type_I_sec_LssB type 80.2 3.2 8.2E-05 20.2 4.3 24 772-795 626-649 (694)
460 PRK13342 recombination factor 80.0 4 0.0001 19.5 10.8 46 153-199 18-68 (417)
461 PRK07471 DNA polymerase III su 80.0 4 0.0001 19.5 5.0 40 153-192 22-63 (363)
462 cd01380 MYSc_type_V Myosin mot 79.8 3.8 9.7E-05 19.6 4.6 34 155-190 75-108 (691)
463 cd01382 MYSc_type_VI Myosin mo 79.8 3.9 9.9E-05 19.6 4.6 23 168-190 91-113 (717)
464 KOG0054 consensus 79.8 3.1 7.9E-05 20.3 4.1 55 138-194 519-573 (1381)
465 TIGR01271 CFTR_protein cystic 79.7 2.3 5.9E-05 21.2 3.5 35 613-649 809-844 (1534)
466 smart00851 MGS MGS-like domain 79.7 2.6 6.5E-05 20.9 3.7 61 572-640 3-63 (90)
467 cd01386 MYSc_type_XVIII Myosin 79.6 4 0.0001 19.5 4.7 33 155-190 75-108 (767)
468 cd03258 ABC_MetN_methionine_tr 79.4 0.25 6.5E-06 28.4 -1.5 51 143-195 7-57 (233)
469 pfam02367 UPF0079 Uncharacteri 79.2 2.7 6.8E-05 20.8 3.7 65 158-233 6-70 (123)
470 pfam05872 DUF853 Bacterial pro 79.2 2.3 5.9E-05 21.2 3.3 50 167-216 20-81 (504)
471 pfam02456 Adeno_IVa2 Adenoviru 79.2 1.9 4.9E-05 21.8 2.9 35 171-205 90-129 (370)
472 cd01383 MYSc_type_VIII Myosin 79.0 4 0.0001 19.4 4.5 34 154-190 80-114 (677)
473 PRK12422 chromosomal replicati 79.0 4.3 0.00011 19.3 9.1 126 168-346 141-276 (455)
474 pfam06068 TIP49 TIP49 C-termin 78.9 4.3 0.00011 19.2 5.1 65 153-217 29-107 (395)
475 PRK09087 hypothetical protein; 78.8 4.3 0.00011 19.2 4.9 119 153-301 29-152 (226)
476 TIGR02903 spore_lon_C ATP-depe 78.5 2.3 6E-05 21.2 3.2 40 153-193 160-200 (616)
477 smart00072 GuKc Guanylate kina 78.3 3.4 8.6E-05 20.0 3.9 36 169-204 3-38 (184)
478 pfam09439 SRPRB Signal recogni 78.3 2.4 6.2E-05 21.1 3.2 24 168-191 3-26 (181)
479 PRK10773 murF UDP-N-acetylmura 78.2 4.5 0.00011 19.1 4.6 32 152-184 82-114 (452)
480 pfam06309 Torsin Torsin. This 78.2 3.4 8.6E-05 20.0 3.9 37 153-190 30-74 (127)
481 PRK13634 cbiO cobalt transport 77.7 0.5 1.3E-05 26.2 -0.5 41 152-194 5-45 (276)
482 CHL00195 ycf46 Ycf46; Provisio 77.6 3.9 1E-04 19.5 4.1 28 674-705 376-404 (491)
483 cd00464 SK Shikimate kinase (S 77.6 4.7 0.00012 19.0 5.3 36 171-206 2-37 (154)
484 PRK13909 putative recombinatio 77.6 4 0.0001 19.4 4.2 19 635-653 602-620 (911)
485 PRK13721 conjugal transfer ATP 77.4 3.4 8.6E-05 20.0 3.7 17 693-709 700-716 (864)
486 KOG3354 consensus 77.4 2.8 7.1E-05 20.6 3.3 25 170-194 14-38 (191)
487 PRK13853 type IV secretion sys 77.3 1.6 4.1E-05 22.4 2.1 25 420-444 331-355 (789)
488 cd03296 ABC_CysA_sulfate_impor 77.3 2 5.1E-05 21.7 2.5 39 155-195 16-54 (239)
489 COG0606 Predicted ATPase with 77.1 3.4 8.7E-05 20.0 3.7 39 146-185 177-215 (490)
490 PRK10646 putative ATPase; Prov 77.0 4.5 0.00012 19.1 4.3 71 152-233 12-83 (153)
491 PRK05506 bifunctional sulfate 76.8 4.4 0.00011 19.2 4.2 64 588-688 453-519 (613)
492 COG5271 MDN1 AAA ATPase contai 76.7 4.9 0.00013 18.8 5.6 36 153-189 450-485 (4600)
493 PRK08853 DNA polymerase III su 76.7 4.9 0.00013 18.8 4.8 38 153-191 21-60 (717)
494 pfam01078 Mg_chelatase Magnesi 76.7 4.3 0.00011 19.2 4.1 33 153-186 8-40 (207)
495 pfam05729 NACHT NACHT domain. 76.5 2.6 6.5E-05 20.9 2.9 23 169-191 1-23 (165)
496 cd02023 UMPK Uridine monophosp 76.4 3.2 8.2E-05 20.2 3.4 22 172-193 3-24 (198)
497 PRK03992 proteasome-activating 76.3 5 0.00013 18.7 6.1 33 169-201 167-199 (390)
498 cd02022 DPCK Dephospho-coenzym 76.1 3.9 9.9E-05 19.6 3.7 48 172-220 3-54 (179)
499 PRK07270 DNA polymerase III su 76.0 5.1 0.00013 18.7 5.2 40 153-192 20-61 (557)
500 PRK07576 short chain dehydroge 76.0 5.1 0.00013 18.7 6.0 61 575-637 25-90 (260)
No 1
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=100.00 E-value=0 Score=1914.31 Aligned_cols=655 Identities=60% Similarity=0.964 Sum_probs=639.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 54775188888843899999999887397337998633764699999999971997899931634689999999986789
Q gi|254780991|r 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 140 ~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
+|+|+|+|.|+||||+||++|++++.+|.++|+|+|||||||||||||||+++|||||||+||||||+|||+|||+|||+
T Consensus 1 ~F~L~s~f~P~GDQP~AI~~L~~~l~~G~~~QtLLGvTGsGKTFT~AnVIa~~~rPTLV~aHNKTLAAQLY~EfKefFPe 80 (667)
T TIGR00631 1 LFKLKSPFQPAGDQPKAIAKLVEGLEAGEKEQTLLGVTGSGKTFTMANVIAQVQRPTLVLAHNKTLAAQLYNEFKEFFPE 80 (667)
T ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 96444788567881899999999985688714785321486278898999984798499857776799999999863867
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEEC
Q ss_conf 83899862134444210155543210221035889999999999998549984998277896168983477225799941
Q gi|254780991|r 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299 (805)
Q Consensus 220 n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEe 299 (805)
||||||||||||||||||||++|||||||||||++||++||||++||++|+|+|||||||||||||.|.+|..+.+.+++
T Consensus 81 NAVEYFvSYYDYYQPEAYvP~~DtyIEKdaSINdeIerlR~SAT~SLl~RrDVIVVASVScIYGLG~P~~Y~~~~~~l~v 160 (667)
T TIGR00631 81 NAVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLRLSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEV 160 (667)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHHCCEEEEEE
T ss_conf 72452552032378732147988413045530046767788988864237878999875520688882556422786540
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCC-CCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCC
Q ss_conf 98111787532343117656338775453318724783178-88778887310444200222101666400111000010
Q gi|254780991|r 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 (805)
Q Consensus 300 hd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsat-ps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~ 378 (805)
|+.++++++..+|+.++|+|||+++.||+||+||+||+||| .+.+.+++||+||||||++|+.+||+|+..+..+++.+
T Consensus 161 G~~~~~~~ll~~LV~lqY~RNd~~f~RG~FRvrGDVvEIfP~~~~~~~~~RiEfF~DEie~I~~~dpLtg~~~~~~~~~~ 240 (667)
T TIGR00631 161 GKEIDRRELLRRLVELQYERNDVDFQRGTFRVRGDVVEIFPAAYEDEFAVRIEFFGDEIERISLVDPLTGEVLRELDSFT 240 (667)
T ss_pred CCCCCHHHHHHHHHHHCEEECCEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCEEEEHHHHCCCCCCHHHHCCCEE
T ss_conf 78558899998863403057123405771257631898634776777248998525543202120511051110056158
Q ss_pred CHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 00000002563678875455899899899887544332110012444477775332112014510113331144655562
Q gi|254780991|r 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 (805)
Q Consensus 379 i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P 458 (805)
+||++|||++.+.+..|+..|+.||.+|+.+|..+|+++++|||.|||.|||||+++.|||+||||||+||+||.||++|
T Consensus 241 ifPA~HyV~p~e~~~~Ai~~I~~EL~eRl~~f~~~~kllEaQRL~qRT~yDLEMl~e~G~C~GIENYSRhl~GR~~GEpP 320 (667)
T TIGR00631 241 IFPASHYVTPEERLERAIKEIEKELEERLKYFEEQGKLLEAQRLKQRTEYDLEMLREMGYCSGIENYSRHLSGRKPGEPP 320 (667)
T ss_pred EECCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCC
T ss_conf 60540002580479999999999999999999877951788889886887788875067337700000021677763159
Q ss_pred HHHHHCC---CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 0233026---5442132101234475445432456541333235766554443222111010012155545444686754
Q gi|254780991|r 459 PTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535 (805)
Q Consensus 459 ~tL~dY~---p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~ 535 (805)
+||+||| |+|||+++||||+|+||+++||+||++||.+||+||||||||+|||||+|+||.+..+|++|||||||.|
T Consensus 321 ~tLlDYF~gfP~DfLlviDESHVT~PQ~~GMY~GD~SRK~~LVeYGFRLPSAlDNRPLkfeEF~~~~~Q~vyVSATPG~~ 400 (667)
T TIGR00631 321 YTLLDYFIGFPEDFLLVIDESHVTLPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEERINQVVYVSATPGDY 400 (667)
T ss_pred CCHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHCCCEEEEECCCCHH
T ss_conf 64776504688650898840257502213441304676543320277530013587898799998559889996388589
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 20132200234320124467720000133101688999999863023212466214789999999986359668732576
Q gi|254780991|r 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 (805)
Q Consensus 536 e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~ 615 (805)
|++++.+.++||||||||++||+|+|||..+|||||++||+.++.+++||||||+|||||||||+||.+.||++.||||+
T Consensus 401 E~e~S~~~vvEQiiRPTGLlDP~i~VRP~~gQvdDL~~EI~~R~~~~ERvLVTTLTKkMAEdLTdYl~E~Gikv~YLHSe 480 (667)
T TIGR00631 401 ELEQSGGNVVEQIIRPTGLLDPEIEVRPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSE 480 (667)
T ss_pred HHHHHCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 99732691589987377864883688358515888899999999728948998201677889999970588379871455
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCH
Q ss_conf 45789999999973189869998458753578777117999628856744460137766543127998669998248988
Q gi|254780991|r 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695 (805)
Q Consensus 616 ~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~~~G~~il~ad~~t~ 695 (805)
+++.+|.+||+++|.|+||||||+|+|++|||+|+||||+|||||||||+||++||||+|||||||.+|+||||||++|.
T Consensus 481 Idt~ER~eiirdLR~G~fDVLVGINLLREGLDlPEVSLVAILDADKEGFLRSerSLIQTIGRAARN~~G~VilYAD~iT~ 560 (667)
T TIGR00631 481 IDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITD 560 (667)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf 78999999999844788408860002002465114889976327888998663027889888752579659997287007
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-H-------HHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999878888888876887188530234667776656665555555543-3-------3343127978899999999
Q gi|254780991|r 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS-I-------DAQQLSLSKKKGKAHLKSL 767 (805)
Q Consensus 696 ~~~~ai~e~~rrr~~q~~~n~~~~i~p~~i~k~i~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~i~~l 767 (805)
||++||+||+|||.+|++||++|||||++|+|+|.+++.............. . ......++.+++.+.|++|
T Consensus 561 sM~~AI~ET~RRR~~Q~~YNe~HgItP~ti~K~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~I~~L 640 (667)
T TIGR00631 561 SMQKAIEETERRRKIQIAYNEEHGITPQTIRKKIKDILDIELKEKEDAAKKKKKGKVAEEPAEDASDLSEKELKKLIKQL 640 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHCCHHHHHHHHHHH
T ss_conf 89999998788899999999753897885405688877777644455555320231122210313208987999999999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 999999997414899999999999999
Q gi|254780991|r 768 RKQMHLAADNLNFEEAARIRDEIKRLK 794 (805)
Q Consensus 768 ~~~m~~aa~~l~fE~Aa~lRD~i~~l~ 794 (805)
+++|++||++|+||+||.|||+|.+||
T Consensus 641 e~~M~~aA~~l~FE~AA~~RD~I~~L~ 667 (667)
T TIGR00631 641 EKEMKQAARNLEFEEAARLRDEIKELK 667 (667)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHCC
T ss_conf 999999997526789999988886239
No 2
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=100.00 E-value=0 Score=1635.42 Aligned_cols=653 Identities=64% Similarity=1.017 Sum_probs=637.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 77547751888888438999999998873973379986337646999999999719978999316346899999999867
Q gi|254780991|r 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 (805)
Q Consensus 138 ~~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~F 217 (805)
+.+|+|+|+|+|+||||+||++|++|+++|.++|+|+||||||||||||++|++++||+|||+||+|||+|||++||+||
T Consensus 3 ~~~F~l~s~~~P~GDQP~AI~~L~~gi~~g~~~Q~LlGvTGSGKTfTmAnvI~~~~rPtLVlahNKTLAAQLy~Efk~fF 82 (657)
T PRK05298 3 MKPFKLVSPYKPAGDQPQAIAELVEGIESGEKHQTLLGVTGSGKTFTMANVIARVQRPTLVLAHNKTLAAQLYGEFKEFF 82 (657)
T ss_pred CCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 88822688899999879999999989974996369970367856689999999868975997665889999999999768
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEE
Q ss_conf 89838998621344442101555432102210358899999999999985499849982778961689834772257999
Q gi|254780991|r 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297 (805)
Q Consensus 218 p~n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvd 297 (805)
|+|+|+||||||||||||||+|++||||||+|+||++||++||+|+++|++|+|+|||+|||||||+|+|.+|..+++.+
T Consensus 83 P~NaVEYFVSYyDYYQPEAYip~tDtYIEKdssIN~eId~lR~sAT~SLl~RrDVIVVASVSCIYGLGsPe~Y~~~~l~l 162 (657)
T PRK05298 83 PENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIERLRLSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHL 162 (657)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCHHHHHHCEEEE
T ss_conf 88717998514456697111478885242363466999999999999885479869997367616899979997343777
Q ss_pred ECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCC
Q ss_conf 41981117875323431176563387754533187247831788877888731044420022210166640011100001
Q gi|254780991|r 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 (805)
Q Consensus 298 Eehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~ 377 (805)
+.|+.++++++..+|+.++|+|+|+.+.||.|+++|+++++||++.|+.++|++||||+|++|.+|||+|+..+..++.+
T Consensus 163 ~~G~~i~r~~ll~~LV~~qY~RnD~~~~RG~FRVrGDvVdI~Pa~~ed~aiRIeffgDeIE~I~~~Dpltg~~i~~~~~~ 242 (657)
T PRK05298 163 RVGQEIDRRELLRRLVELQYERNDIDFQRGTFRVRGDVIDIFPAEYEDRAIRIEFFGDEIERISEFDPLTGEVLGELDRV 242 (657)
T ss_pred ECCCEECHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCEE
T ss_conf 58977179999999998287767651168555773664788337777616999995780628999827788352433349
Q ss_pred CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 00000000256367887545589989989988754433211001244447777533211201451011333114465556
Q gi|254780991|r 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 (805)
Q Consensus 378 ~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~ 457 (805)
.+||++||+++.+.+..|+..|+.+|.+|+.+|..++++.|+|||+|||.+|+||+++.|||+||||||+||++|.||++
T Consensus 243 ~IfPAshyVt~~e~l~~Ai~~I~~EL~eRl~~f~~~gKllEAqRL~qRT~yDlEMl~E~GyCsGIENYSRhl~gR~pGe~ 322 (657)
T PRK05298 243 TIYPASHYVTPRERLERAIESIKEELEERLKELEKEGKLLEAQRLEQRTRYDLEMLRELGYCSGIENYSRHLSGRAPGEP 322 (657)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 98178676899799999999999999999999997677798889999988799999982877560121565069998878
Q ss_pred CHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 20233026544213210123447544543245654133323576655444322211101001215554544468675420
Q gi|254780991|r 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537 (805)
Q Consensus 458 P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~ 537 (805)
|+||+||||+|+|+++||||+|+||+++||+||++||.+|++||||||||+|||||+|+||++..+|++|||||||+||+
T Consensus 323 P~tLlDYfp~DfLl~iDESHvtvPQi~gMy~GDrsRK~~LVe~GFRLPSAlDNRPL~feEFe~~~~q~iyVSATPg~yEl 402 (657)
T PRK05298 323 PPTLLDYFPDDFLLFIDESHVTVPQIGGMYNGDRSRKETLVEYGFRLPSALDNRPLKFEEFEAKVPQTIYVSATPGDYEL 402 (657)
T ss_pred CCHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 94488757756599983211240878878623157788898705778723348997889999744877999569858988
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 13220023432012446772000013310168899999986302321246621478999999998635966873257645
Q gi|254780991|r 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 (805)
Q Consensus 538 e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~ 617 (805)
+++ +.++|||+||||++||+|+|||..+|+|||+.||++++.+++|+||+|+||||||+|++||.+.||++.|+||+++
T Consensus 403 ~~s-~~vvEQiIRPTGLlDP~ievrp~~~Qiddl~~ei~~~~~~~er~LvttlTkkmaEdLt~yl~~~~ik~~YlHs~i~ 481 (657)
T PRK05298 403 EKS-GQVVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDID 481 (657)
T ss_pred HHC-CCEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 736-6734577778878798459964878799999999999636976999954598999999999967980799626661
Q ss_pred HHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHH
Q ss_conf 78999999997318986999845875357877711799962885674446013776654312799866999824898899
Q gi|254780991|r 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 (805)
Q Consensus 618 ~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~~~G~~il~ad~~t~~~ 697 (805)
+.+|.+||++||.|++|||||+|+|++|||+|+|+||+|||||++||+||++||||+||||+||.+|+||||||.+|.||
T Consensus 482 t~eR~eIl~~LR~G~~DVlVGINLLREGLDlPEVSLVaILDADKeGFLRs~~SLiQtiGRAARN~~G~vIlYAD~iT~SM 561 (657)
T PRK05298 482 TLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSM 561 (657)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHH
T ss_conf 88999999998588875897500220457876135798870685221035205999987886257974999815450999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999878888888876887188530234667776656665555555543333431279788999999999999999974
Q gi|254780991|r 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777 (805)
Q Consensus 698 ~~ai~e~~rrr~~q~~~n~~~~i~p~~i~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~m~~aa~~ 777 (805)
++||+||+|||.+|++||++|||||++|.|++.+++......... ......+..+..+.|+.|+++|++||++
T Consensus 562 ~~ai~ET~rRR~iQ~~yN~~h~ItP~tI~K~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~l~~~M~~aA~~ 634 (657)
T PRK05298 562 QKAIDETERRREIQIAYNEEHGITPKTIKKKIRDILDGVYEEEAD-------AKAEKMSKKELEKLIKKLEKQMKEAAKN 634 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCH-------HHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998999999999956998643163325454132210000-------1101379899999999999999999984
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 148999999999999999973
Q gi|254780991|r 778 LNFEEAARIRDEIKRLKSSPY 798 (805)
Q Consensus 778 l~fE~Aa~lRD~i~~l~~~~~ 798 (805)
|+||+||.|||+|++|++...
T Consensus 635 l~FE~Aa~lRD~i~~l~~~~~ 655 (657)
T PRK05298 635 LEFEEAARLRDEIKELKEQLL 655 (657)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
T ss_conf 799999998999999999871
No 3
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=1617.01 Aligned_cols=661 Identities=63% Similarity=0.986 Sum_probs=644.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 77547751888888438999999998873973379986337646999999999719978999316346899999999867
Q gi|254780991|r 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 (805)
Q Consensus 138 ~~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~F 217 (805)
+..|+|+|+|+|+||||+||++|++|+++|.++|+|+|||||||||+|||+|++++||+|||+||+|||+|||++||+||
T Consensus 2 ~~~F~l~s~f~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~fF 81 (663)
T COG0556 2 MKPFKLHSPFKPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFKEFF 81 (663)
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 97516606889999867999999988863860258862036883107999999868971998255547999999999768
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEE
Q ss_conf 89838998621344442101555432102210358899999999999985499849982778961689834772257999
Q gi|254780991|r 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297 (805)
Q Consensus 218 p~n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvd 297 (805)
|+|+||||||||||||||||+|++||||||+||+|++||++||+|+++|++|+|+|||+|||||||+|+|..|..|.+.+
T Consensus 82 P~NaVEYFVSYYDYYQPEAYvp~tDtyIEKdasiNdeId~mR~SAt~sLleR~DVIVVaSVScIYGlG~P~~y~~~~~~l 161 (663)
T COG0556 82 PENAVEYFVSYYDYYQPEAYVPSTDTYIEKDASINDEIDRLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMMLSL 161 (663)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHEEEE
T ss_conf 67645888640014685134577773575365067899999999888775047869999876510489869987537998
Q ss_pred ECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCC
Q ss_conf 41981117875323431176563387754533187247831788877888731044420022210166640011100001
Q gi|254780991|r 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 (805)
Q Consensus 298 Eehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~ 377 (805)
++|+.++++++..+|+.++|.|+|+++.||.|+++|++++|||++.+++++|++||||+|++|++|||+|+..+..+++.
T Consensus 162 ~vG~~i~~~~ll~~Lv~~qY~Rnd~~f~rG~FRvrGDvveIfPa~~~~~~~RieffgDEie~i~~~dpltg~~~~~~~~~ 241 (663)
T COG0556 162 EVGQEIDRRELLRKLVDLQYERNDVDFQRGTFRVRGDVVEIFPAYYDDEAIRIEFFGDEIERISEFDPLTGQVIGELDRF 241 (663)
T ss_pred ECCCCCCHHHHHHHHHHHCEEECCCCCCCCCEEEECCEEEECCCCCCCEEEEEEECCCHHHEEEEECCCCCCCCCCCCCE
T ss_conf 35773489999999997261114555466715851767997216667605999972753033534445668521345518
Q ss_pred CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 00000000256367887545589989989988754433211001244447777533211201451011333114465556
Q gi|254780991|r 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 (805)
Q Consensus 378 ~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~ 457 (805)
.++|++||+++.+.+..|+..|+.+|.+|+.+|..++++.++|||.|||.+|+||+++.|||+||||||+||++|.||++
T Consensus 242 ~iypashyvt~~~~~~~Ai~~Ik~EL~eRl~~~~~~~kllEaqRL~qRT~~DlEMl~e~G~C~GIENYSRhl~gr~~Ge~ 321 (663)
T COG0556 242 TIYPASHYVTPRERLEQAIESIKEELEERLKFFEKNNKLLEAQRLEQRTEYDLEMLRETGYCSGIENYSRHLTGRKPGEP 321 (663)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC
T ss_conf 98056331478889999999999999999999987795378888887777539999982877661333565058999957
Q ss_pred CHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 20233026544213210123447544543245654133323576655444322211101001215554544468675420
Q gi|254780991|r 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537 (805)
Q Consensus 458 P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~ 537 (805)
|+||+||||+|||+++||||+|+||+++||+||++||.+|++||||||||+|||||+|+||+.+.+|++|||||||+||+
T Consensus 322 P~tL~DYfp~d~Ll~IDESHvTvPQi~gMynGDrsRK~~LVeyGFRLPSAlDNRPL~feEf~~~~~q~i~VSATPg~~E~ 401 (663)
T COG0556 322 PYTLFDYFPDDFLLFIDESHVTVPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEAKIPQTIYVSATPGDYEL 401 (663)
T ss_pred CCCHHHHCCCCEEEEEECCCCCHHHHHCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 98478858841389982444650765320133378888898715768611137997779999745977999789974877
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 13220023432012446772000013310168899999986302321246621478999999998635966873257645
Q gi|254780991|r 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 (805)
Q Consensus 538 e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~ 617 (805)
+++.+.++|||+||||++||+|++||..+|||||++||+.++.+++|+||+|+||||||+|++||.+.||++.||||+++
T Consensus 402 e~s~~~vveQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdid 481 (663)
T COG0556 402 EQSGGNVVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDID 481 (663)
T ss_pred HHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 74558426887247788898526514877478999999999964972999843688899999999866964786424403
Q ss_pred HHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHH
Q ss_conf 78999999997318986999845875357877711799962885674446013776654312799866999824898899
Q gi|254780991|r 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 (805)
Q Consensus 618 ~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~~~G~~il~ad~~t~~~ 697 (805)
+.+|.+|++++|.|++|||||+|+|++|||+|+|+||+|+|||++||+||++||||+||||+||.+|+||||||.+|.||
T Consensus 482 TlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM 561 (663)
T COG0556 482 TLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSM 561 (663)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf 89999999997577874898501331347886455798860685444345325999987886357973999710114999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999878888888876887188530234667776656665555555543333431279788999999999999999974
Q gi|254780991|r 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777 (805)
Q Consensus 698 ~~ai~e~~rrr~~q~~~n~~~~i~p~~i~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~m~~aa~~ 777 (805)
++||+||+|||.+|++||++|||||++|+|.|.+++.......... .........++.++..+.|++|+++|++||++
T Consensus 562 ~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K~i~d~l~~~~~~~~~~--~~~~~~~~~~~~~e~~~~I~~Le~~M~~aA~~ 639 (663)
T COG0556 562 QKAIDETERRREIQMAYNEEHGITPQTIKKKIRDILDGEYEEDEYK--AKIEKKASKMSKKELEKLIKKLEKEMKEAAKN 639 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999988889999999999669997122011566642011012333--20122223489899999999999999999984
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 14899999999999999997332
Q gi|254780991|r 778 LNFEEAARIRDEIKRLKSSPYFQ 800 (805)
Q Consensus 778 l~fE~Aa~lRD~i~~l~~~~~~~ 800 (805)
|+||.||.+||+|.+|++.....
T Consensus 640 l~FE~Aa~lRD~i~~L~~~~~~~ 662 (663)
T COG0556 640 LEFEEAARLRDEIKELKEELLGK 662 (663)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 78888999999999999876035
No 4
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=663.89 Aligned_cols=545 Identities=19% Similarity=0.167 Sum_probs=392.8
Q ss_pred HHHHHHHHHCC--------CHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH---HHHCCCCCCC---CCCHHHHHCC
Q ss_conf 13456664233--------13688888740221000367777510102323432---1000367532---1000232012
Q gi|254780991|r 14 RIQSISTRVDD--------LDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKN---AAKRMLIHQR---ENTASKGEFQ 79 (805)
Q Consensus 14 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~ 79 (805)
+|+++....|. ++...|+..++-...+.+..++.+.....+..... +......+.+ .+... .+-+
T Consensus 59 klk~i~~v~d~~p~l~~~~~~L~~w~s~yy~~~~g~vl~~~lP~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kq 137 (730)
T COG1198 59 KLKEIERVLDTEPVLTPELLRLIEWAADYYLSPLGDVLRLALPVLLRQGYAKPSLPVLFYRLTERGRAALPDLKR-AKKQ 137 (730)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC-CHHH
T ss_conf 533167650677788989999999999764576889999867634305655555403778763010110433112-3569
Q ss_pred HHHHHHHHH----HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 455654226----7743211147558999999998739603205740266678887421588775477518888884389
Q gi|254780991|r 80 SQSSISMSE----KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPA 155 (805)
Q Consensus 80 ~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~ 155 (805)
......+.. .......+.+++.++ ++.|+.+|+...- .. .|..+..++ .|.......-..+|+.
T Consensus 138 ~~~l~~l~~~~~~~~~~l~~~~~~s~~~--~~~l~~~g~~~~~--~~-~~~~~~~~~-------~~~~~~~~~Ln~~Q~~ 205 (730)
T COG1198 138 ARVLEALLQGGEWTRSALAHAAGVSLSV--LKGLEKKGLIEII--EL-EPPLVVAPP-------DPSLSEWLALNQEQQA 205 (730)
T ss_pred HHHHHHHHCCCCCCHHHHHHHCCHHHHH--HHHHHHCCCEEEE--CC-CCCCCCCCC-------CCCCCCCCCCCHHHHH
T ss_conf 9999998707732214554321303898--9888765735653--03-677752234-------6565431103889999
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 9999999887397337998633764699999999971---9978999316346899999999867898389986213444
Q gi|254780991|r 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 (805)
Q Consensus 156 Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~y 232 (805)
|++.|.+.+ .|++..||+|||||||||+|+++|+++ ||+||||||||+||+|+..||+.+|| +.|..+||.++
T Consensus 206 a~~~i~~~~-~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~vlHS~Ls-- 281 (730)
T COG1198 206 AVEAILSSL-GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG-AKVAVLHSGLS-- 281 (730)
T ss_pred HHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHC-CCHHHHCCCCC--
T ss_conf 999999750-56665367677788589999999999997598799995653456999999999867-87453146579--
Q ss_pred CCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHH
Q ss_conf 42101555432102210358899999999999985499849982778961689834772257999419811178753234
Q gi|254780991|r 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312 (805)
Q Consensus 233 qpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~~~~~~l 312 (805)
+++|.+.|+++.+|+..|||||||||| +|+++||+||+|||||++ ++|.
T Consensus 282 -----------------------~~er~~~W~~~~~G~~~vVIGtRSAlF---~Pf~~LGLIIvDEEHD~s-----YKq~ 330 (730)
T COG1198 282 -----------------------PGERYRVWRRARRGEARVVIGTRSALF---LPFKNLGLIIVDEEHDSS-----YKQE 330 (730)
T ss_pred -----------------------HHHHHHHHHHHHCCCCEEEEEECHHHC---CCHHHCCEEEEECCCCCC-----CCCC
T ss_conf -----------------------278999999985597159997122330---723125769970245643-----2477
Q ss_pred HHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHH
Q ss_conf 31176563387754533187247831788877888731044420022210166640011100001000000002563678
Q gi|254780991|r 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392 (805)
Q Consensus 313 ~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l 392 (805)
..++||+||+|++||+...+++||||||||+|+|++...+.+..+..-.++. ...+|..+++.++...
T Consensus 331 ~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~------------~a~~p~v~iiDmr~e~ 398 (730)
T COG1198 331 DGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAG------------RARLPRVEIIDMRKEP 398 (730)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCEEEEECCCCCC------------CCCCCCCEEEECCCCC
T ss_conf 7777678999999988609988982688778999866538558997035455------------5678762587356665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf 87545589989989988754433211001244447777533211201451011333114465556202330265442132
Q gi|254780991|r 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472 (805)
Q Consensus 393 ~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~ 472 (805)
..........+.+. ...+.+.+.+.+.++++||+....+|+.|||...|+||+.+|+.|.... .+.||||
T Consensus 399 ~~~~~~lS~~Ll~~-i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~--~L~CH~C------- 468 (730)
T COG1198 399 LETGRSLSPALLEA-IRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATG--QLRCHYC------- 468 (730)
T ss_pred CCCCCCCCHHHHHH-HHHHHHCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCC--EEEECCC-------
T ss_conf 54677579999999-9999842986899971677654004256898024899995127864798--0670779-------
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 10123447544543245654133323576655444322211101001215554544468675420132200234320124
Q gi|254780991|r 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552 (805)
Q Consensus 473 idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~~~~~~~eqi~rpt 552 (805)
..+...|. .||.|...
T Consensus 469 --g~~~~~p~--------------------~Cp~Cgs~------------------------------------------ 484 (730)
T COG1198 469 --GYQEPIPQ--------------------SCPECGSE------------------------------------------ 484 (730)
T ss_pred --CCCCCCCC--------------------CCCCCCCC------------------------------------------
T ss_conf --99899887--------------------79899997------------------------------------------
Q ss_pred CCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 46772000013310168899999986302321246621478999999998635966873257645789999999973189
Q gi|254780991|r 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632 (805)
Q Consensus 553 g~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~ 632 (805)
....++.||+|.+|+|..+||++.+.++|.|++..+...+.+|.+|..|+
T Consensus 485 ------------------------------~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge 534 (730)
T COG1198 485 ------------------------------HLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGE 534 (730)
T ss_pred ------------------------------EEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf ------------------------------36996461999999999878999479984666664356899999975799
Q ss_pred CCEEEEHHHHHCCCCCCCCCEEEEECCC----CCCCCCCHHH---HHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 8699984587535787771179996288----5674446013---7766543127-998669998248988999999987
Q gi|254780991|r 633 FDVLVGINLLREGLDIPECGLVAILDAD----KEGFLRSKTS---LIQTIGRAAR-NVNSKVILYADTITKSIQLAIDET 704 (805)
Q Consensus 633 ~diLvgt~~~akGlD~p~v~lV~i~dAD----~~~f~~~~~~---~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~ 704 (805)
+||||||||+|||||||+||||+|+||| .+|||++|++ |+|++||||| +.+|.|++++..++....+++..-
T Consensus 535 ~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRAsEr~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~ 614 (730)
T COG1198 535 ADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRG 614 (730)
T ss_pred CCEEECCHHHHCCCCCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHC
T ss_conf 88663416664278866631899996314315888435789999999997553267889869999679985799999866
Q ss_pred HHH--HHHHHHHHHHHCCCC
Q ss_conf 888--888887688718853
Q gi|254780991|r 705 TRR--REKQLEHNKKHNINP 722 (805)
Q Consensus 705 ~rr--r~~q~~~n~~~~i~p 722 (805)
+.. .+..++.-++.+..|
T Consensus 615 dy~~F~~~El~~Rk~~~~PP 634 (730)
T COG1198 615 DYEAFYEQELAERKELGLPP 634 (730)
T ss_pred CHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999888618997
No 5
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=0 Score=621.48 Aligned_cols=525 Identities=18% Similarity=0.146 Sum_probs=369.9
Q ss_pred HHHHHHHHHHHCC--------CHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHCCHHHH
Q ss_conf 6413456664233--------13688888740221000367777510102323432100036753210002320124556
Q gi|254780991|r 12 DSRIQSISTRVDD--------LDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSS 83 (805)
Q Consensus 12 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (805)
..+||+|..++|+ ++++.|+..++-...+.+..++.+-.... .. .+....
T Consensus 58 ~~~lK~I~~vld~~p~l~~~~l~l~~wia~yY~~~~g~vl~~~lP~~~~~------------------~~----kq~~~l 115 (699)
T PRK05580 58 LGKLKPIEEVLDPEPVLTPELLRLADWVADYYLGPLGDVLRLALPPRLRR------------------AP----KQQRLL 115 (699)
T ss_pred HHCCEEHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC------------------CH----HHHHHH
T ss_conf 32067766524999888999999999999857877999999968986324------------------77----799999
Q ss_pred HHHH-HHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 5422-677432111475589999999987396032057402666788874215887754775188888843899999999
Q gi|254780991|r 84 ISMS-EKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLK 162 (805)
Q Consensus 84 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~~L~~ 162 (805)
..+. ..........+++.++ ++.|+.+|+......... + .+..... .......+.+|.+|++.|.+
T Consensus 116 ~~l~~~~~~~~~~~~~~s~~~--l~~l~~~g~~~~~~~~~~----~-~~~~~~~------~~~~~~L~~eQ~~a~~~i~~ 182 (699)
T PRK05580 116 AALGGAWTAALLEKAGVSASV--LKGLAKKGLIEIVERPPL----R-LRDPPDP------DTEPPTLNEEQAAALAAIRA 182 (699)
T ss_pred HHHCCCCHHHHHHHCCCCHHH--HHHHHHCCCEEEEEECCC----C-CCCCCCC------CCCCCCCCHHHHHHHHHHHH
T ss_conf 863232426788762898899--999997897167532145----6-5433444------56787889999999999985
Q ss_pred HHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 887397337998633764699999999971---99789993163468999999998678983899862134444210155
Q gi|254780991|r 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239 (805)
Q Consensus 163 ~l~~g~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p 239 (805)
. .+++..||||||||||||||+++|+++ ||++|||||||+||+|++.||+++||+ .|..+||..+
T Consensus 183 ~--~~~~~~LL~GvTGSGKTevYl~li~~~l~~GkqvLiLvPEI~lt~q~~~rl~~~fg~-~v~v~HS~ls--------- 250 (699)
T PRK05580 183 A--GGFSAFLLDGVTGSGKTEVYLQAIAEALAQGKQALVLVPEIALTPQLLARFRARFGA-RVAVLHSGLS--------- 250 (699)
T ss_pred C--CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCC-CEEEECCCCC---------
T ss_conf 5--888717874789860799999999999973997899917678789999999987099-5799648898---------
Q ss_pred CCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf 54321022103588999999999999854998499827789616898347722579994198111787532343117656
Q gi|254780991|r 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 (805)
Q Consensus 240 ~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~~~~~~l~~~~Y~R 319 (805)
+++|+++|.++++|+..||||||||+| +|+.++|+||+|||||.+ +++...++||+
T Consensus 251 ----------------~~eR~~~w~~i~~G~~~IVIGtRSAvF---aP~~nLgLIIVDEEhd~S-----YKq~~~Pry~A 306 (699)
T PRK05580 251 ----------------DGERYRAWLAALRGEARVVIGTRSALF---APFKNLGLIIVDEEHDDS-----YKQQDGPRYHA 306 (699)
T ss_pred ----------------HHHHHHHHHHHHCCCCEEEEECCCEEE---CCCCCCCEEEEECCCCHH-----HCCCCCCCCCH
T ss_conf ----------------579999999997699719997360110---657898489997365454-----44666876119
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf 33877545331872478317888778887310444200222101666400111000010000000025636788754558
Q gi|254780991|r 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399 (805)
Q Consensus 320 ~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i 399 (805)
||+|..|++..+++.|++|||||+|+|++...+++..+..-.++... ..|..+.+.+.+........+
T Consensus 307 RdvA~~Ra~~~~~~liLgSaTPSlEs~~~~~~g~~~~~~l~~r~~~~------------~~P~v~ivDm~~~~~~~~~~l 374 (699)
T PRK05580 307 RDVAVLRAKQEGCPVVLGSATPSLESLANAESGKYHLLRLTRRAGAA------------ALPRVEIIDMREEPLERGAGL 374 (699)
T ss_pred HHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCEEECCCCCCCCC------------CCCEEEECCCCCCCCCCCCCC
T ss_conf 99999999984998896168999999999975997664465322347------------898379335421410025754
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCC
Q ss_conf 99899899887544332110012444477775332112014510113331144655562023302654421321012344
Q gi|254780991|r 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479 (805)
Q Consensus 400 ~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~ 479 (805)
...+...+ ....+.+.+...++++||+..+.+|+.||+...|.+|+..|+.|..... +.||||+ ....
T Consensus 375 s~~l~~~i-~~~L~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~L~~h~~~~~--l~Ch~Cg---------~~~~ 442 (699)
T PRK05580 375 SPPLLEAI-REALERGEQVLLFLNRRGYAPFLLCRDCGWVARCPHCDGPLTLHRAGRR--LRCHHCG---------YQEP 442 (699)
T ss_pred CHHHHHHH-HHHHHCCCEEEEEECCCCCCCEEECHHCCCEEECCCCCCEEEECCCCCC--EECCCCC---------CCCC
T ss_conf 69999999-9999738847999547752251474531994565678986342068983--3226468---------8365
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 75445432456541333235766554443222111010012155545444686754201322002343201244677200
Q gi|254780991|r 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 (805)
Q Consensus 480 ~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~i 559 (805)
. .++||.|...
T Consensus 443 ~--------------------~~~Cp~Cgs~------------------------------------------------- 453 (699)
T PRK05580 443 I--------------------PRACPECGST------------------------------------------------- 453 (699)
T ss_pred C--------------------CCCCCCCCCC-------------------------------------------------
T ss_conf 7--------------------5546567997-------------------------------------------------
Q ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEH
Q ss_conf 00133101688999999863023212466214789999999986359668732576457899999999731898699984
Q gi|254780991|r 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 (805)
Q Consensus 560 eir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt 639 (805)
.-..++.||+|.+|+|.+.||+..|.++|.|+..++...++++.+|..|++||||||
T Consensus 454 -----------------------~l~~~g~Gteri~eel~~~FP~~~i~r~d~d~~~~~~~~~~~~~~~~~~~~dIlvGT 510 (699)
T PRK05580 454 -----------------------DLRAVGVGTERTEEELARLFPGARVLRIDRDTTRRKGALEQLLEDFARGEADILVGT 510 (699)
T ss_pred -----------------------CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEECC
T ss_conf -----------------------524111685999999997789998899847556786316889999746898789777
Q ss_pred HHHHCCCCCCCCCEEEEECCC----CCCCCCCHHH---HHHHHHHHCCC-CCCEEEEEECCCCHHHHHHHHHHHH--HHH
Q ss_conf 587535787771179996288----5674446013---77665431279-9866999824898899999998788--888
Q gi|254780991|r 640 NLLREGLDIPECGLVAILDAD----KEGFLRSKTS---LIQTIGRAARN-VNSKVILYADTITKSIQLAIDETTR--RRE 709 (805)
Q Consensus 640 ~~~akGlD~p~v~lV~i~dAD----~~~f~~~~~~---~~q~~GRagR~-~~G~~il~ad~~t~~~~~ai~e~~r--rr~ 709 (805)
||++||||||+|+||+|+||| .+||+++|++ ++|++|||||+ ..|+||+++..+++...+++..-+. ...
T Consensus 511 qmiakG~df~~v~lv~vldaD~~l~~pd~ra~E~~~qll~qvagragr~~~~g~viiQt~~p~~~~~~~l~~~d~~~f~~ 590 (699)
T PRK05580 511 QMLAKGHDFPNVTLVGVLDADTGLFSPDFRAAERTFQLLTQVAGRAGRAEKPGEVLIQTYEPEHPLLQALLRWDYDAFAE 590 (699)
T ss_pred CCCCCCCCCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHH
T ss_conf 33455677776269987322653548883479999999999987655678898799993799989999999689999999
Q ss_pred HHHHHHHHHCCCCH
Q ss_conf 88876887188530
Q gi|254780991|r 710 KQLEHNKKHNINPQ 723 (805)
Q Consensus 710 ~q~~~n~~~~i~p~ 723 (805)
.+++..+..+..|-
T Consensus 591 ~el~~R~~~~~PPf 604 (699)
T PRK05580 591 AELAERREAGLPPF 604 (699)
T ss_pred HHHHHHHHCCCCCH
T ss_conf 99999997099986
No 6
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=100.00 E-value=0 Score=470.52 Aligned_cols=384 Identities=21% Similarity=0.221 Sum_probs=288.8
Q ss_pred EEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEC-CCCCCCCCCCCCCCCCHHH
Q ss_conf 998633764699999999971---997899931634689999999986789838998621-3444421015554321022
Q gi|254780991|r 172 LLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY-YDYYQPEAYVPRTDTYIEK 247 (805)
Q Consensus 172 lL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~-~~~yqpEay~p~~d~~i~k 247 (805)
+|+|||||||||||+++++++ |+++|+|+|||+||+|+..||+.+|+. .+.++||. ++
T Consensus 1 ll~G~tGsGkte~y~~~~~~~l~~g~~~~~l~Pei~l~~q~~~~~~~~fg~-~~~~~h~~~l~----------------- 62 (524)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSALVLVPEIALTPQTLQRFKGRFGS-QVAVLHSGKLS----------------- 62 (524)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCC-CHHHHCCCCCC-----------------
T ss_conf 954567886168889999999733771789704211016789999997187-20101001367-----------------
Q ss_pred HCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHH-CCCCCCHHHHHH
Q ss_conf 1035889999999999998549984998277896168983477225799941981117875323431-176563387754
Q gi|254780991|r 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK-QQYKRQDIGIIR 326 (805)
Q Consensus 248 ~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~~~~~~l~~-~~Y~R~D~a~~R 326 (805)
+.+|..+|+.+..++..||||+||||| .|++++|+||+|||||++ +++... +.|+++|+++.|
T Consensus 63 --------~~~~~~~w~~~~~g~~~~v~G~rsa~f---~P~~~lglii~deehd~~-----yk~~~~~p~y~ar~~~~~~ 126 (524)
T TIGR00595 63 --------DSEKLDAWRKVKLGEALVVIGTRSALF---LPLKNLGLIIVDEEHDSS-----YKQEELPPRYHARDVAVYR 126 (524)
T ss_pred --------CHHHHHHHHHHHCCCCEEEECCCHHHH---CCCCCCCEEEEECCCCCC-----CCCCCCCCCCCHHHHHHHH
T ss_conf --------345688999985186005640303432---462114547873464521-----0013688552067889887
Q ss_pred HHHCCCCEEEECCCCCHHHHHHHHCCCCC----CHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHH-HHHHH
Q ss_conf 53318724783178887788873104442----00222101666400111000010000000025636788754-55899
Q gi|254780991|r 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGN----DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM-KYIKE 401 (805)
Q Consensus 327 G~f~~rg~ILdsatps~Es~~~Rie~f~d----eIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~-~~i~~ 401 (805)
++...++.|+|++||++|+|.......+. .+..-+++. ....|....+.......+.. ..+..
T Consensus 127 ~~~~~~p~~lgsatP~le~~~~~~~~~~~p~~~~~~l~~r~~------------~~~~p~~~~~d~~~~~~~~~~~~~~~ 194 (524)
T TIGR00595 127 AKLFNCPVVLGSATPSLESYHNAKRGKYRPQRHLLVLPRRVG------------GRKPPEVKLIDLRKEPRQGNRSFLSP 194 (524)
T ss_pred HHHCCCCEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHC------------CCCCCEEEEEECCCCCCCCCCCCCCH
T ss_conf 640488578805672278999987166562032111013205------------77575156762210002132102258
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCC--CCHHHHHCCCCCCEEEECCCCCC
Q ss_conf 8998998875443321100124444777753321120145101133311446555--62023302654421321012344
Q gi|254780991|r 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE--PPPTLFEYIPEDSLLFVDESHVT 479 (805)
Q Consensus 402 el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge--~P~tL~dY~p~d~ll~idesh~~ 479 (805)
.+... .+...+...+.+.++++|++....+|+.|||...|.+|+.+++.|.... +|.+.|||| .....
T Consensus 195 ~l~~~-~~~~~~~~~q~~~f~n~rg~~~~~~c~~cg~~~~cp~c~~~~~~h~~~~~g~p~l~ch~c---------~~~~~ 264 (524)
T TIGR00595 195 ELLTA-LEETLAAGEQAILFLNRRGYSPNLLCRSCGYVLECPNCDVSLTYHKKEGNGQPKLRCHYC---------GYQEP 264 (524)
T ss_pred HHHHH-HHHHHHCCCCEEEEEECCCCCCCEEECCCCCCEECCCCCEEEEEEEECCCCCCEEEEECC---------CCCCC
T ss_conf 99999-998874167068986155665300000267501056653023553213688620122105---------76677
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 75445432456541333235766554443222111010012155545444686754201322002343201244677200
Q gi|254780991|r 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 (805)
Q Consensus 480 ~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~i 559 (805)
.|..| |+|.....
T Consensus 265 ~p~~c--------------------p~c~~~~~----------------------------------------------- 277 (524)
T TIGR00595 265 VPKTC--------------------PACGSEDT----------------------------------------------- 277 (524)
T ss_pred CCCCC--------------------CCCCCCCC-----------------------------------------------
T ss_conf 75436--------------------44466430-----------------------------------------------
Q ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEH
Q ss_conf 00133101688999999863023212466214789999999986359668732576457899999999731898699984
Q gi|254780991|r 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 (805)
Q Consensus 560 eir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt 639 (805)
....+.||++.+++|+..||+..+.+.|.|++........++++|..|++||||||
T Consensus 278 ------------------------~~~~g~G~~~~~~~l~~~~p~~~~~~~d~d~~~~~~~~~~~~~~f~~g~~d~l~Gt 333 (524)
T TIGR00595 278 ------------------------LKYKGLGTEKVEEELAKLFPGARIARLDSDTTSRKGAHEALLNQFANGKADILIGT 333 (524)
T ss_pred ------------------------EEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECH
T ss_conf ------------------------12035427899999998558873676412212351468999999750784067500
Q ss_pred HHHHCCCCCCCCCEEEEECCC----CCCCCCCHHH---HHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHH
Q ss_conf 587535787771179996288----5674446013---7766543127-9986699982489889999999
Q gi|254780991|r 640 NLLREGLDIPECGLVAILDAD----KEGFLRSKTS---LIQTIGRAAR-NVNSKVILYADTITKSIQLAID 702 (805)
Q Consensus 640 ~~~akGlD~p~v~lV~i~dAD----~~~f~~~~~~---~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~ 702 (805)
||++||+|||+|+||+++++| .+||+..|+. |.|++||||| ..+|.||+++..+.........
T Consensus 334 q~~~kG~~fp~~~l~g~~~~d~~l~~~d~r~~e~~~~l~~q~~Gr~gr~~~~g~v~iqt~~P~~~~~~~~~ 404 (524)
T TIGR00595 334 QMIAKGHDFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGEVIIQTYNPGHPAIQAAL 404 (524)
T ss_pred HHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHH
T ss_conf 34431577442036778731200255421346778888887641002346887479973077516889876
No 7
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3e-40 Score=320.03 Aligned_cols=272 Identities=18% Similarity=0.289 Sum_probs=230.1
Q ss_pred HCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 73973379986337646999999999719978999316346899999999867898389986213444421015554321
Q gi|254780991|r 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244 (805)
Q Consensus 165 ~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~~ 244 (805)
..| ..++|.|++||.+++.+|.+.++.++|+||++|+..-|.++++++.. |.+..|.+| |.||+.
T Consensus 12 ~aG-~~~~l~gL~GSA~al~lA~l~~~~~~p~lvV~~d~~~A~~l~~dL~~-f~~~~V~~f-------------P~wEtL 76 (1148)
T PRK10689 12 KAG-DQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ-FTDQMVMNL-------------ADWETL 76 (1148)
T ss_pred CCC-CEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHH-CCCCCEEEC-------------CCHHCC
T ss_conf 999-71267788606999999999997099889991999999999999985-489725689-------------721047
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCH-HHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 0221035889999999999998549984998277896168983-477225799941981117875323431176563387
Q gi|254780991|r 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323 (805)
Q Consensus 245 i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P-~~~lglIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a 323 (805)
+....|.|.++..+|+++..+|.+++..|||.|++|+....+| ....+..+.++.||.++.+.+...|+..||+|++.+
T Consensus 77 PYd~~SP~~di~s~Rl~~L~~L~~~~~~IvVttv~ALlqrlpP~~~l~~~~l~L~~G~~ld~d~L~~~L~~~GY~rv~~V 156 (1148)
T PRK10689 77 PYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQV 156 (1148)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 76657998689999999999875289999997689962226998999637389958785499999999998699154505
Q ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 75453318724783178887788873104442002221016664001110000100000000256367887545589989
Q gi|254780991|r 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403 (805)
Q Consensus 324 ~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i~~el 403 (805)
..+|+|++||+|+|+|||..+ .|+|++||||+||+|+.|||.||+++..++++.++|+++++...+.+...........
T Consensus 157 ~epGEFAvRGgIIDIFP~~~~-~PvRIEFFgDEIESIR~FDp~TQRSi~~i~~i~I~Pa~E~~l~~~~i~~fr~~~re~f 235 (1148)
T PRK10689 157 MEHGEYATRGALLDLFPMGSE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF 235 (1148)
T ss_pred CCCEEEEEECCEEEECCCCCC-CCEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 885269876898998889988-2669992497876367577010777467775999757256679899999999999873
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEE
Q ss_conf 9899887544332110012444477775332112014510113331144655562023302654421321
Q gi|254780991|r 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473 (805)
Q Consensus 404 ~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~i 473 (805)
.. ......-.+.+.+.....|+|+|.+.+.. ++..+++||+|++.+++.
T Consensus 236 ~~-----------------~~~~~~iy~~is~g~~~~GiE~ylPLff~----e~l~tLfDYLp~~~liv~ 284 (1148)
T PRK10689 236 EV-----------------KRDPEHIYQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYFPANTLLVN 284 (1148)
T ss_pred CC-----------------CCCHHHHHHHHHCCCCCCCHHHHHHHCCC----CCCCHHHHHCCCCEEEEE
T ss_conf 15-----------------62268999998668974517786032026----542368873777739996
No 8
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.6e-36 Score=289.42 Aligned_cols=270 Identities=27% Similarity=0.442 Sum_probs=229.6
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf 73379986337646999999999719978999316346899999999867898389986213444421015554321022
Q gi|254780991|r 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247 (805)
Q Consensus 168 ~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~~i~k 247 (805)
...++|-|++|+.|.++++.+.++.+.+.++++++-.-+..++.+++ ++|+..|.+| |.||+....
T Consensus 9 ~~~~~l~gl~~~~~a~~~a~l~~~~~~~~~~vt~~~~~a~~l~~~L~-~~~~~~v~~~-------------P~~e~lpyd 74 (1139)
T COG1197 9 GDPLLLGGLSGGAKALLIAALAEEKPNPVLLVTADLQEADRLAEDLR-FFPDQPVLLL-------------PDWETLPYD 74 (1139)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH-HCCCCCEEEC-------------CCCCCCCCC
T ss_conf 77557506781367999999986368882899589999999999998-5788735877-------------774456564
Q ss_pred HCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHH-HHCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 103588999999999999854998499827789616898347-7225799941981117875323431176563387754
Q gi|254780991|r 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326 (805)
Q Consensus 248 ~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~-~lglIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~R 326 (805)
..+.|.++-..|+++.++|.+++..|||.+++|+-...+|.+ +.+..+...+|+.++.+.+..+++..+|++++++..+
T Consensus 75 ~~sp~~d~~~~Rl~~L~~L~~~~~~i~v~~~~all~~lpp~~~~~~~~l~l~~G~~~d~~~l~~~L~~~GY~~v~~V~~~ 154 (1139)
T COG1197 75 RFSPSQDIVSSRLEALRRLAQGKKGIVVVPVNALLQKLPPPDFLEENSLTLKVGEELDLDDLEARLVRAGYERVDMVMEP 154 (1139)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCHHHHHHCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 46887047999999999987279988998879953346996676335389624872689999999998097003320245
Q ss_pred HHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 53318724783178887788873104442002221016664001110000100000000256367887545589989989
Q gi|254780991|r 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406 (805)
Q Consensus 327 G~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i~~el~~r 406 (805)
|+|++||+|||+|||+.+ .|+|++||||+|++|+.|||.||+++.++....+.|++++++..+.+..........
T Consensus 155 GEfsvRG~IlDIfp~~~e-~P~RieffgdeIesIR~Fd~~tQrS~~~v~~i~l~Pa~e~~l~~~~~~~~~~~~~~~---- 229 (1139)
T COG1197 155 GEFAVRGGILDIFPPGSE-EPYRIEFFGDEIESIRSFDPETQRSLEEVEEIELLPASEFILDEEAIEAFRKQYLET---- 229 (1139)
T ss_pred CCEEECCCEEEECCCCCC-CCEEEEECCCCEEEEECCCHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH----
T ss_conf 624511654786048988-867999658701024525856514524554499746211466978999999988764----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECC
Q ss_conf 988754433211001244447777533211201451011333114465556202330265442132101
Q gi|254780991|r 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475 (805)
Q Consensus 407 l~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~ide 475 (805)
+ + ..+ -....+.+.......|++.|.+.+. +.+.|++||+|++.++++|+
T Consensus 230 ---f--~-----~~~----~~~~~~~~~~g~~~~g~e~~lplfy-----~~~~~l~dylp~~~~i~~d~ 279 (1139)
T COG1197 230 ---F--E-----PKR----DDALYEALSSGRRFAGLEYFLPLFY-----EDLATLFDYLPKNTLIVVDE 279 (1139)
T ss_pred ---C--C-----CCC----CHHHHHHHHCCCCCCCHHHHHHHHH-----CCCHHHHHHCCCCCCEEEHH
T ss_conf ---0--5-----664----2378999855898542898768775-----45078998556688176656
No 9
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=9.8e-33 Score=263.72 Aligned_cols=121 Identities=19% Similarity=0.314 Sum_probs=112.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 32124662147899999999863596687325764578999999997318986999845875357877711799962885
Q gi|254780991|r 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 (805)
Q Consensus 582 ~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~ 661 (805)
...++||+.|++.+++|++.|...|+.+..+|+++++.+|.++|++|++|+++|||+||++|+|||||+|++|+|||
T Consensus 245 ~~~~IIF~~Tk~~~~~l~~~L~~~g~~~~~LHgdm~q~~R~~~l~~Fr~g~~~ILVaTDvaARGLDi~~V~~VINyD--- 321 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYD--- 321 (629)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEC---
T ss_conf 88489998227889999999997699657656899999999999999759998898786210557725688899968---
Q ss_pred CCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 6744460137766543127-998669998248988999999987888888
Q gi|254780991|r 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREK 710 (805)
Q Consensus 662 ~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~ 710 (805)
+|.+.++|||||||||| |+.|.+|+| +++...+.++.++|.-..
T Consensus 322 --lP~d~e~YVHRiGRTGRaGr~G~Aitf---v~~~e~~~l~~ier~~~~ 366 (629)
T PRK11634 322 --IPMDSESYVHRIGRTGRAGRAGRALLF---VENRERRLLRNIERTMKL 366 (629)
T ss_pred --CCCCHHHCCCCCCCCCCCCCCEEEEEE---ECHHHHHHHHHHHHHHCC
T ss_conf --989743401025833168996469998---888999999999999779
No 10
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1e-31 Score=256.04 Aligned_cols=124 Identities=15% Similarity=0.230 Sum_probs=114.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCC
Q ss_conf 23212466214789999999986359668732576457899999999731898699984587535787771179996288
Q gi|254780991|r 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 (805)
Q Consensus 581 ~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD 660 (805)
...+++||+.|++.+++|+++|...|+.+..+||++++.+|.+++++|++|.++|||+||++|||||||+|++|+|||
T Consensus 241 ~~~~~IIFcntk~~v~~l~~~L~~~g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLVaTDvaaRGIDi~~V~~VInyD-- 318 (459)
T PRK11776 241 RPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKSLEAVINYE-- 318 (459)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEEC--
T ss_conf 876603761748999999999986799689987999999999999999779997998810434767713598899978--
Q ss_pred CCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 56744460137766543127-99866999824898899999998788888888
Q gi|254780991|r 661 KEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQL 712 (805)
Q Consensus 661 ~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~q~ 712 (805)
+|.+.++|+||+||||| |+.|.+|+| +++...+.++.+++.....+
T Consensus 319 ---lP~~~e~YvHRiGRTGRaG~~G~ait~---vt~~e~~~l~~ie~~~~~~i 365 (459)
T PRK11776 319 ---LARDPEVHVHRIGRTGRAGSKGLALSL---VAPEEMQRAAAIEDYLGRKL 365 (459)
T ss_pred ---CCCCHHHHHHCCCHHHCCCCCEEEEEE---ECHHHHHHHHHHHHHHCCCC
T ss_conf ---989745520205251378996579999---86899999999999978998
No 11
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3e-31 Score=252.58 Aligned_cols=134 Identities=25% Similarity=0.392 Sum_probs=118.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 32124662147899999999863596687325764578999999997318986999845875357877711799962885
Q gi|254780991|r 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 (805)
Q Consensus 582 ~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~ 661 (805)
..+++||+.|++.++.|+.+|...|+.+..+||++++.+|.+++++|++|+++|||+||++++|||||+|++|+|||
T Consensus 247 ~~k~iIF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~V~~VInyd--- 323 (417)
T PRK11192 247 VTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQKKRNEAIKRLTDGRVNVLVATDVAARGIDIDDISHVINFD--- 323 (417)
T ss_pred CCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEEC---
T ss_conf 66521531124667689886531488357540017999999999999769998999812434677704698899979---
Q ss_pred CCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 6744460137766543127-9986699982489889999999878888888876887188530
Q gi|254780991|r 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723 (805)
Q Consensus 662 ~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~q~~~n~~~~i~p~ 723 (805)
+|.+.++|+||+||||| |..|.+|+| +++.....+..+++.-...+......|+.|+
T Consensus 324 --~P~~~~~YvHRiGRTGR~G~~G~ait~---v~~~d~~~~~~ie~~~~~~~~~~~~~~~~~~ 381 (417)
T PRK11192 324 --MPRSADTYLHRIGRTGRAGKKGTAISL---VEAHDHLLLGKIERYIEEPLKRRVIDELRPK 381 (417)
T ss_pred --CCCCHHHHHHHCCHHHCCCCCEEEEEE---ECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf --999888923306772348995489998---7489999999999997798873126886889
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.6e-30 Score=247.24 Aligned_cols=124 Identities=21% Similarity=0.362 Sum_probs=114.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCC
Q ss_conf 23212466214789999999986359668732576457899999999731898699984587535787771179996288
Q gi|254780991|r 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 (805)
Q Consensus 581 ~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD 660 (805)
...+++||+.|++.++.|++.|...|+.+..+|+++++.+|.++|++|++|++.|||+||+++||||||+|++|+|||
T Consensus 256 ~~~k~IIF~nT~~~ve~l~~~L~~~g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VLVaTDVAARGIDIp~V~~VINYD-- 333 (574)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYD-- 333 (574)
T ss_pred CCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEC--
T ss_conf 776511533418999999999997799689970999999999999999769997997735002335714699799957--
Q ss_pred CCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 56744460137766543127-99866999824898899999998788888888
Q gi|254780991|r 661 KEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQL 712 (805)
Q Consensus 661 ~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~q~ 712 (805)
||.+.++|+|||||||| |++|.+|+| ++......+.+||+.-+..+
T Consensus 334 ---lP~~~e~YVHRIGRTGRaGr~G~AITf---v~~~e~~~l~~IE~~i~~~i 380 (574)
T PRK04537 334 ---LPFDAEDYVHRIGRTARLGEEGDAISF---ACERYAMSLPDIEAYIEQKI 380 (574)
T ss_pred ---CCCCHHHHHCCCCHHHCCCCCEEEEEE---ECHHHHHHHHHHHHHHCCCC
T ss_conf ---969821411245350378993359998---77799899999999867878
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.9e-31 Score=251.78 Aligned_cols=124 Identities=22% Similarity=0.315 Sum_probs=115.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 32124662147899999999863596687325764578999999997318986999845875357877711799962885
Q gi|254780991|r 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 (805)
Q Consensus 582 ~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~ 661 (805)
..+++||+.|++.++.|+++|...|+.+..+|+++++.+|.++|++|++|+++|||+||++++|||||+|++|+|||
T Consensus 245 ~~~~iIF~~tk~~a~~l~~~L~~~g~~~~~lHg~~sq~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~V~~VInyD--- 321 (457)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYE--- 321 (457)
T ss_pred CCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEC---
T ss_conf 66335884119999999999855699823232478999999999999869982999577011556635688799938---
Q ss_pred CCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6744460137766543127-998669998248988999999987888888887
Q gi|254780991|r 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQLE 713 (805)
Q Consensus 662 ~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~q~~ 713 (805)
+|.+.++|+|||||||| |..|.+|+| +++.....++++++.-.+.+.
T Consensus 322 --~P~~~e~YvHRiGRTGRaG~~G~ait~---v~~~e~~~~~~ie~~~~~~~~ 369 (457)
T PRK10590 322 --LPNVPEDYVHRIGRTGRAAATGEALSL---VCVDEHKLLRDIEKLLKKEIP 369 (457)
T ss_pred --CCCCHHHEECCCCCCCCCCCCEEEEEE---ECHHHHHHHHHHHHHHCCCCC
T ss_conf --999744500226706058995369998---668999999999999779887
No 14
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.9e-30 Score=243.53 Aligned_cols=122 Identities=20% Similarity=0.298 Sum_probs=110.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 32124662147899999999863596687325764578999999997318986999845875357877711799962885
Q gi|254780991|r 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 (805)
Q Consensus 582 ~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~ 661 (805)
..+++||+.|+..++.|+.+|...|+.+..+||++.+.+|.++|++|++|++.|||+||+++||||||+|++|+|||
T Consensus 332 ~~k~IIF~nt~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGLDi~~V~~VInyD--- 408 (472)
T PRK01297 332 WERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFT--- 408 (472)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEEC---
T ss_conf 87368961749999999987654496168643778999999999999769996998866133667757888899968---
Q ss_pred CCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6744460137766543127-9986699982489889999999878888888
Q gi|254780991|r 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQ 711 (805)
Q Consensus 662 ~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~q 711 (805)
+|.+.++|+||+||||| |..|.+|+|+ +......+.+++....++
T Consensus 409 --~P~~~~~YIHRiGRTGRaG~~G~aisfv---~~~d~~~~~~ie~~l~~~ 454 (472)
T PRK01297 409 --LPEDPDDYVHRIGRTGRAGASGVSISFA---GEDDAFQLPEIEELLGRK 454 (472)
T ss_pred --CCCCHHHHHHCCCHHHCCCCCEEEEEEE---CHHHHHHHHHHHHHHCCC
T ss_conf --9897676010265312689963799986---388999999999998897
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.5e-30 Score=243.78 Aligned_cols=121 Identities=22% Similarity=0.339 Sum_probs=110.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 32124662147899999999863596687325764578999999997318986999845875357877711799962885
Q gi|254780991|r 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 (805)
Q Consensus 582 ~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~ 661 (805)
..+++||+.|++.++.|+.+|...|+.+..+||++.+.+|.++|++|++|+++|||+||++|||||||+|++|+|||
T Consensus 256 ~~k~iIF~nt~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaTDvaaRGLDi~~V~~VInyD--- 332 (423)
T PRK04837 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVPQKKRLRILEQFTRGDLDILVATDVAARGLHIPDVTHVFNYD--- 332 (423)
T ss_pred CCCEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEEC---
T ss_conf 87468861628889999999976598178722545799999999999769998998700432777726798899969---
Q ss_pred CCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 6744460137766543127-998669998248988999999987888888
Q gi|254780991|r 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREK 710 (805)
Q Consensus 662 ~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~ 710 (805)
+|.+.++|+||+||||| |..|.+|+|+ +......+..++..-..
T Consensus 333 --~P~~~~~YiHRiGRTgRaG~~G~aitf~---~~~~~~~l~~ie~~~~~ 377 (423)
T PRK04837 333 --LPDDCEDYVHRIGRTGRAGASGHSISFA---CEEYALNLPAIETYIGH 377 (423)
T ss_pred --CCCCHHHEECCCCHHHCCCCCEEEEEEE---CHHHHHHHHHHHHHHCC
T ss_conf --9897455100465412789946899987---39999999999999689
No 16
>PTZ00110 helicase; Provisional
Probab=99.98 E-value=2.2e-29 Score=238.57 Aligned_cols=115 Identities=22% Similarity=0.326 Sum_probs=106.5
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECC
Q ss_conf 02321246621478999999998635966873257645789999999973189869998458753578777117999628
Q gi|254780991|r 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659 (805)
Q Consensus 580 ~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dA 659 (805)
....+++||+.||+.+++|+..|...|+.+..+||+++|.+|.++|++|+.|++.|||+||++|||||||+|++|+|||
T Consensus 426 ~~~~kvIIFvnTK~~ad~L~~~L~~~G~~a~~LHGd~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDI~dV~~VINYD- 504 (602)
T PTZ00110 426 MDGGKILIFSETKKGADTLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKHPIMIATDVASRGLDVRDVKYVINFD- 504 (602)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEEC-
T ss_conf 7899689992973899999999986799579820889999999999999769998898822233155515798799958-
Q ss_pred CCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHH
Q ss_conf 856744460137766543127-9986699982489889999
Q gi|254780991|r 660 DKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQL 699 (805)
Q Consensus 660 D~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ 699 (805)
||.+.+.|||||||||| |..|.+++|.+.-...+-+
T Consensus 505 ----~P~~~edYVHRIGRTGRAG~kG~A~TF~Tpd~~~~a~ 541 (602)
T PTZ00110 505 ----FPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRSAR 541 (602)
T ss_pred ----CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHH
T ss_conf ----9798022101356150689931699997777077899
No 17
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.4e-28 Score=229.72 Aligned_cols=117 Identities=26% Similarity=0.438 Sum_probs=105.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCC
Q ss_conf 12466214789999999986359668732576457899999999731898699984587535787771179996288567
Q gi|254780991|r 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 (805)
Q Consensus 584 R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~ 663 (805)
+++||+.||+.++.|+..|...|+.+..+||++++.+|.+++++|++|+++|||+|+++|||||||+|++|+|||
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGiDi~~v~~VinyD----- 349 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYD----- 349 (513)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCEEEECC-----
T ss_conf 399995767769999999997896599973889988999999999759989899806544689966674799787-----
Q ss_pred CCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 44460137766543127-998669998248988999999987888
Q gi|254780991|r 664 FLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRR 707 (805)
Q Consensus 664 f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rr 707 (805)
.|.+.++|||||||||| |..|.+|+|++.. .....+..+++.
T Consensus 350 ~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~--~e~~~l~~i~~~ 392 (513)
T COG0513 350 LPLDPEDYVHRIGRTGRAGRKGVAISFVTEE--EEVKKLKRIEKR 392 (513)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCH--HHHHHHHHHHHH
T ss_conf 9998041317345343489987279985562--349999999998
No 18
>KOG0331 consensus
Probab=99.96 E-value=2.4e-27 Score=223.39 Aligned_cols=117 Identities=24% Similarity=0.423 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCC
Q ss_conf 88999999863023212466214789999999986359668732576457899999999731898699984587535787
Q gi|254780991|r 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 (805)
Q Consensus 569 ddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~ 648 (805)
.+++.++. ..++.+++||+.|||.+++|+.++...++.+..+|||++|.+|+.+|++||.|++.|||+|||+|+||||
T Consensus 330 ~~lL~~~~--~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi 407 (519)
T KOG0331 330 GKLLEDIS--SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDV 407 (519)
T ss_pred HHHHHHHH--CCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC
T ss_conf 99999973--5689868999643364999998877517661550066648899999975026885469881531256887
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECC
Q ss_conf 77117999628856744460137766543127-998669998248
Q gi|254780991|r 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADT 692 (805)
Q Consensus 649 p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~ 692 (805)
|+|.||++|| ||++.+.||||+||||| |..|.+++|...
T Consensus 408 ~dV~lVInyd-----fP~~vEdYVHRiGRTGRa~~~G~A~tfft~ 447 (519)
T KOG0331 408 PDVDLVINYD-----FPNNVEDYVHRIGRTGRAGKKGTAITFFTS 447 (519)
T ss_pred CCCCEEEECC-----CCCCHHHHHHHCCCCCCCCCCCEEEEEEEH
T ss_conf 6664799678-----999989988653765457888248999727
No 19
>PRK13766 Hef nuclease; Provisional
Probab=99.96 E-value=1.1e-24 Score=203.45 Aligned_cols=422 Identities=19% Similarity=0.211 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHHHHHHCC--CCEEEEEE
Q ss_conf 3899999999887397337998633764699999999971----99789993163468999999998678--98389986
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM----QRPAIVMAPNKILAAQLYSEFKNFFP--HNAVEYFV 226 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~----gr~aLvLvPei~La~QL~~rfk~~Fp--~n~V~~f~ 226 (805)
|.+..+.-.. + ..++.==||||||+|-+-+|.+. ++.+|+|+|.+.|..|-+.-|+.+++ ...|..+.
T Consensus 20 Q~el~~~Al~----~--NtiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFLaPT~pLV~Qq~~~~~~~l~i~~~~i~~lt 93 (764)
T PRK13766 20 QQLLAAKALK----G--NTLVVLPTGLGKTAIALLVIAERLQKYGGKVLILAPTKPLVEQHAEFFRKFLNIDPEKIVVLT 93 (764)
T ss_pred HHHHHHHHHH----C--CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 9999999985----8--989995998668999999999999748988999858888999999999997099955289998
Q ss_pred ECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHC----CCCCHHHHHCCEEEEECCCC
Q ss_conf 21344442101555432102210358899999999999985499849982778961----68983477225799941981
Q gi|254780991|r 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDS 302 (805)
Q Consensus 227 S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIf----gl~~P~~~lglIIvdEehd~ 302 (805)
.-. + ...|-..|. +..|||+|---+. .--.+.....++|+||.|-.
T Consensus 94 G~~----------------------~---~~~r~~~w~-----~~~Viv~TPQvl~ndL~~g~i~l~dv~lLVfDEaHha 143 (764)
T PRK13766 94 GEI----------------------S---PEKRAALWE-----KAKVIVATPQVIENDLLAGRISLEDVSLLIFDEAHRA 143 (764)
T ss_pred CCC----------------------C---HHHHHHHHC-----CCCEEEECCHHHHHHHHHCCCCHHHCCEEEEECCCCC
T ss_conf 887----------------------8---276899860-----7999999908999999829867888228999746666
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEC-CCCCHHHHH---HHHCCCCCCHHHHHCCCCCCCCHHHHCCCCC
Q ss_conf 117875323431176563387754533187247831-788877888---7310444200222101666400111000010
Q gi|254780991|r 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI-FPSHLEDVA---WRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 (805)
Q Consensus 303 ~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILds-atps~Es~~---~Rie~f~deIe~I~~fDplT~~~~~~~~~~~ 378 (805)
.... -+......+|+ ....+-|+|. |+|..+.-. +--+++-..++...+.|+.-.+-+....-.
T Consensus 144 ~Gnh-~Y~~I~~~y~~----------~~~~PrILGLTASPGs~~e~I~ev~~nL~i~~ie~rte~d~dv~~yv~~~~ie- 211 (764)
T PRK13766 144 VGNY-AYVFIAERYHE----------DAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVKTEDDPDVRPYVHKVKVE- 211 (764)
T ss_pred CCCC-CHHHHHHHHHH----------CCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEE-
T ss_conf 6776-28999999985----------37785588503688764489999998659872896144443445433567327-
Q ss_pred CHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 00000002563678875455899899899887544332110---------012444477775332112014510113331
Q gi|254780991|r 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA---------QRLEQRITYDLEMLETTGSCQSIENYSRYL 449 (805)
Q Consensus 379 i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea---------~rL~qR~~~dle~l~e~G~~~gienyS~~L 449 (805)
...+...+.+......+...+..++..+...+..... ..+..+....+......+| .....++-.+
T Consensus 212 ----~i~V~l~~~~~~i~~~l~~~l~~~l~~L~~~~~~~~~~~~~sk~~l~~~~~~~~~~i~~~~~~~~-~~~~~~a~~~ 286 (764)
T PRK13766 212 ----WIRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKRIQQEIARGDPEGY-EAISIHAEAM 286 (764)
T ss_pred ----EEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHH
T ss_conf ----99807978999999999999999999999669700455546899999999999998864687999-9999999999
Q ss_pred CCCCC-----CCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 14465-----5562023302654421321012344754454324565413332357665544432221110100121555
Q gi|254780991|r 450 TGRNP-----GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524 (805)
Q Consensus 450 ~~r~~-----ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~ 524 (805)
..+.. ......++.|+.. ...
T Consensus 287 kl~~a~ell~tqg~~~~~~yl~~------------------------------------------------------l~~ 312 (764)
T PRK13766 287 KLRHAVELLETQGVEALRRYLER------------------------------------------------------LRE 312 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------------HHH
T ss_conf 99999999998518999999999------------------------------------------------------997
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH---CCCCCCCCCCEECCCCCHHHHHHHHHHH--HHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 4544468675420132200234320---1244677200001331016889999998--6302321246621478999999
Q gi|254780991|r 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINL--AAQQGLRILLTVLTKRMAEDLT 599 (805)
Q Consensus 525 ~~~~satPg~~e~e~~~~~~~eqi~---rptg~idp~ieir~~~~qvddl~~ei~~--~~~~~~R~l~~~~tkr~~e~l~ 599 (805)
............+-. ...+.++. ...+...| .++.|.+-+.+ ....+.|++||+-++..+..|+
T Consensus 313 ~~~~~~~k~~k~l~~--d~~~~~~~~~~~~~~~~hP---------Kl~kL~eiL~~~~~~~~~sRvIIFv~~R~Ta~~L~ 381 (764)
T PRK13766 313 EARSSGSKASKRLVE--DPRFKKAVRLLKELDIEHP---------KLEKLLEIVKEQLGKKPDSRIIVFTQYRDTAEKIV 381 (764)
T ss_pred HCCCCCCHHHHHHHH--CHHHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHH
T ss_conf 301333267899875--8778999998764467893---------79999999999972699980899927679999999
Q ss_pred HHHHHCCCEEEECCC--------CCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 998635966873257--------645789999999973189869998458753578777117999628856744460137
Q gi|254780991|r 600 EYLYERNIRVRYMHS--------EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 (805)
Q Consensus 600 ~~~~~~~i~~~~~h~--------~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~ 671 (805)
++|...+|++..+-| .+++.+..++|++||.|+++|||+|.++.+|||||.|.||+-||+ ..|+--.
T Consensus 382 ~~L~~~~ik~~~fVGq~s~~~~kGmsqkeQ~evL~~FR~Ge~NvLVATSV~EEGLDIP~cdLVI~Yd~-----v~S~IR~ 456 (764)
T PRK13766 382 DLLNKNGIKAIRFVGQASRDGDKGMSQKEQIETLDRFRAGEYNVLVATSVAEEGLDIPSVDLVIFYEP-----VPSEIRS 456 (764)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEECC-----CCCHHHH
T ss_conf 99865899722898368987888989899999999985799888987676644888877888999379-----9619999
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCHHH
Q ss_conf 76654312799866999824898899
Q gi|254780991|r 672 IQTIGRAARNVNSKVILYADTITKSI 697 (805)
Q Consensus 672 ~q~~GRagR~~~G~~il~ad~~t~~~ 697 (805)
|||.|||||...|+|++....=|..+
T Consensus 457 IQR~GRTGR~r~G~v~vLi~~gt~de 482 (764)
T PRK13766 457 IQRKGRTGRQRGGRVVVLIAKGTRDE 482 (764)
T ss_pred HHHCCCCCCCCCCEEEEEEECCCHHH
T ss_conf 99746656778974999995686267
No 20
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=7.6e-26 Score=212.12 Aligned_cols=330 Identities=20% Similarity=0.274 Sum_probs=219.8
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE-EEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 754775188888843899999999887397337-9986337646999999999---719978999316346899999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFK 214 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk 214 (805)
..|.-.=||++|+||..||++|..-+.++.... ||.|=-|||||.|-+-++- +.|.|+.+|+|.--||.|-|..|+
T Consensus 248 ~~~~~~LPF~LT~~Q~~~~~ei~~dl~~~~~m~rllqGDVGsGKT~va~~a~~~~~~~g~q~a~maPTeiLa~Qh~~~~~ 327 (677)
T PRK10917 248 KKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYRNLK 327 (677)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH
T ss_conf 99998099988988999999999876599542777328767888999999999999819948998767999999999999
Q ss_pred HHCCCC--EEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHC
Q ss_conf 867898--389986213444421015554321022103588999999999999854998499827789616898347722
Q gi|254780991|r 215 NFFPHN--AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292 (805)
Q Consensus 215 ~~Fp~n--~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lg 292 (805)
.+|++- .|++..+.. ...+|-.....+.+|+..|||||-+-+. -...+.++|
T Consensus 328 ~~~~~~~i~v~lltg~~-------------------------~~~~~~~~~~~~~~g~~~i~iGTHal~~-~~v~f~~Lg 381 (677)
T PRK10917 328 KWLEPLGIRVALLTGSL-------------------------KGKERREILEALASGEADIVIGTHALIQ-DDVEFHNLG 381 (677)
T ss_pred HHHHHCCCEEEEEECCC-------------------------HHHHHHHHHHHHHCCCCCEEEEHHHHHH-CCCCCCCCC
T ss_conf 87763498899840774-------------------------1778999999985799778973078773-556446665
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHH
Q ss_conf 57999419811178753234311765633877545331872478317888778887310444200222101666400111
Q gi|254780991|r 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372 (805)
Q Consensus 293 lIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~ 372 (805)
++|+||.|-= |-+-+..-...| ...-.++=+|||---+ ....++||.=-+ .+.
T Consensus 382 lvviDEQHrF-------------GV~QR~~l~~k~--~~~~~L~mtATPIPRt--la~~~~g~~d~s----------~i~ 434 (677)
T PRK10917 382 LVIIDEQHRF-------------GVHQRLALREKG--ENPHVLVMTATPIPRT--LAMTAYGDLDVS----------VID 434 (677)
T ss_pred EEEECHHHHH-------------HHHHHHHHHHCC--CCCEEEEEECCCCHHH--HHHHHHCCCCEE----------ECC
T ss_conf 6995305776-------------399999998439--9972999836884388--999873576666----------667
Q ss_pred HCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCC
Q ss_conf 00001000000002563678875455899899899887544332110012444477775332112014510113331144
Q gi|254780991|r 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452 (805)
Q Consensus 373 ~~~~~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r 452 (805)
...... .|..-++........+...+.. .+...++ .|++|-
T Consensus 435 ~~P~~r-~~i~T~~~~~~~~~~~~~~i~~---------------------------~~~~g~q-----------~y~v~p 475 (677)
T PRK10917 435 ELPPGR-KPITTVVIPDSRRDEVYERIRE---------------------------EIAKGRQ-----------AYVVCP 475 (677)
T ss_pred CCCCCC-CCCEEEEECHHHHHHHHHHHHH---------------------------HHHCCCE-----------EEEEEC
T ss_conf 799999-8726999762568999999999---------------------------9975992-----------899941
Q ss_pred CCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 65556202330265442132101234475445432456541333235766554443222111010012155545444686
Q gi|254780991|r 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532 (805)
Q Consensus 453 ~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satP 532 (805)
.++||.
T Consensus 476 -------------------~ieese------------------------------------------------------- 481 (677)
T PRK10917 476 -------------------LIEESE------------------------------------------------------- 481 (677)
T ss_pred -------------------CCCCCC-------------------------------------------------------
T ss_conf -------------------311233-------------------------------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 75420132200234320124467720000133101688999999863023212466214789999999986359668732
Q gi|254780991|r 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612 (805)
Q Consensus 533 g~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~ 612 (805)
+ +| ...-....+.|.+.|+ ++++..+
T Consensus 482 ------~---------------~~-------------------------------~~~~~~~~~~l~~~~~--~~~v~~~ 507 (677)
T PRK10917 482 ------K---------------LD-------------------------------LQSAEETYEELQKALP--ELRVGLL 507 (677)
T ss_pred ------C---------------CH-------------------------------HHHHHHHHHHHHHHCC--CCEEEEE
T ss_conf ------2---------------01-------------------------------7779999999984489--9759983
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CCCEEEEEEC
Q ss_conf 576457899999999731898699984587535787771179996288567444601377665431279-9866999824
Q gi|254780991|r 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYAD 691 (805)
Q Consensus 613 h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~-~~G~~il~ad 691 (805)
||-++..+.+++|++|++|++||||+|.++.=|+|+||.+..+|.|||.=|. -.|.|-=||.||| ..|-+++.++
T Consensus 508 hG~m~~~ek~~~m~~F~~g~~~iLvsTtviEvGvdvpna~~mvi~~aerfGl----sqLhQLRGRVgRg~~~~~c~l~~~ 583 (677)
T PRK10917 508 HGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGL----AQLHQLRGRVGRGAAQSYCVLLYK 583 (677)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCCCCCCEEEEECCCCCCH----HHHHHHCCCCCCCCCCEEEEEEEC
T ss_conf 0789878999999999839999999898975586788885899977010536----788774274367888458999838
Q ss_pred C
Q ss_conf 8
Q gi|254780991|r 692 T 692 (805)
Q Consensus 692 ~ 692 (805)
.
T Consensus 584 ~ 584 (677)
T PRK10917 584 D 584 (677)
T ss_pred C
T ss_conf 9
No 21
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=3.9e-23 Score=191.84 Aligned_cols=330 Identities=21% Similarity=0.263 Sum_probs=221.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCEE-EEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 4775188888843899999999887397337-9986337646999999999---71997899931634689999999986
Q gi|254780991|r 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNF 216 (805)
Q Consensus 141 f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk~~ 216 (805)
|.-.=||++|.+|..||++|...+.+..+.. ||.|=-|||||.|-+=++- +.|.|+..++|.--||.|.|..|+.+
T Consensus 255 ~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~ 334 (677)
T COG1200 255 FLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKW 334 (677)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf 99858997678999999999866448666678752676777899999999999872881688663799999999999987
Q ss_pred CCCC--EEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCE
Q ss_conf 7898--38998621344442101555432102210358899999999999985499849982778961689834772257
Q gi|254780991|r 217 FPHN--AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294 (805)
Q Consensus 217 Fp~n--~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglI 294 (805)
|+.- .|++..+.. .-+.|-.....|.+|+..|||||-.=|. =..-+.++|++
T Consensus 335 l~~~~i~V~lLtG~~-------------------------kgk~r~~~l~~l~~G~~~ivVGTHALiQ-d~V~F~~LgLV 388 (677)
T COG1200 335 LEPLGIRVALLTGSL-------------------------KGKARKEILEQLASGEIDIVVGTHALIQ-DKVEFHNLGLV 388 (677)
T ss_pred HHHCCCEEEEEECCC-------------------------CHHHHHHHHHHHHCCCCCEEEECCHHHH-CCEEECCEEEE
T ss_conf 665197489864466-------------------------5067999999874799897997221220-45044202389
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHH-HHHCCCCCCCCHHHH
Q ss_conf 9994198111787532343117656338775453318724783178887788873104442002-221016664001110
Q gi|254780991|r 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE-EISEFYPLTGQKIRN 373 (805)
Q Consensus 295 IvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe-~I~~fDplT~~~~~~ 373 (805)
|+||-|- +|-+-|..-...|.- .--.++=+|||--- -.++..|||.=- .|.+.=
T Consensus 389 IiDEQHR-------------FGV~QR~~L~~KG~~-~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP--------- 443 (677)
T COG1200 389 IIDEQHR-------------FGVHQRLALREKGEQ-NPHVLVMTATPIPR--TLALTAFGDLDVSIIDELP--------- 443 (677)
T ss_pred EEECCCC-------------CCHHHHHHHHHHCCC-CCCEEEEECCCCHH--HHHHHHHCCCCCHHHCCCC---------
T ss_conf 9725210-------------229999999973789-99679995798507--8898886146301112579---------
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCC
Q ss_conf 00010000000025636788754558998998998875443321100124444777753321120145101133311446
Q gi|254780991|r 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 (805)
Q Consensus 374 ~~~~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~ 453 (805)
.. ..|..-+..+.+........|..++. . +.-.|+.|-
T Consensus 444 --~G-RkpI~T~~i~~~~~~~v~e~i~~ei~---------------------------~-----------GrQaY~VcP- 481 (677)
T COG1200 444 --PG-RKPITTVVIPHERRPEVYERIREEIA---------------------------K-----------GRQAYVVCP- 481 (677)
T ss_pred --CC-CCCEEEEEECCCCHHHHHHHHHHHHH---------------------------C-----------CCEEEEEEC-
T ss_conf --89-97408999644447999999999997---------------------------4-----------997999952-
Q ss_pred CCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC
Q ss_conf 55562023302654421321012344754454324565413332357665544432221110100121555454446867
Q gi|254780991|r 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533 (805)
Q Consensus 454 ~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg 533 (805)
.++||. .+
T Consensus 482 ------------------LIeeSE-------------------------~l----------------------------- 489 (677)
T COG1200 482 ------------------LIEESE-------------------------KL----------------------------- 489 (677)
T ss_pred ------------------CCCCCC-------------------------CC-----------------------------
T ss_conf ------------------535433-------------------------11-----------------------------
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 54201322002343201244677200001331016889999998630232124662147899999999863596687325
Q gi|254780991|r 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 (805)
Q Consensus 534 ~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h 613 (805)
+ -.....+.++|..+|+ ++++.-+|
T Consensus 490 --------------------------~---------------------------l~~a~~~~~~L~~~~~--~~~vgL~H 514 (677)
T COG1200 490 --------------------------E---------------------------LQAAEELYEELKSFLP--ELKVGLVH 514 (677)
T ss_pred --------------------------H---------------------------HHHHHHHHHHHHHHCC--CCEEEEEE
T ss_conf --------------------------3---------------------------6549999999998705--46367775
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CCCEEEEEECC
Q ss_conf 76457899999999731898699984587535787771179996288567444601377665431279-98669998248
Q gi|254780991|r 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADT 692 (805)
Q Consensus 614 ~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~-~~G~~il~ad~ 692 (805)
|-++..+.++||++|++|++||||+|.++.=|.|+||-|+.+|.|||.=|+ -.|-|-=||.||| ....++|.+..
T Consensus 515 Grm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGL----aQLHQLRGRVGRG~~qSyC~Ll~~~ 590 (677)
T COG1200 515 GRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGL----AQLHQLRGRVGRGDLQSYCVLLYKP 590 (677)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEECHHHHHH----HHHHHHCCCCCCCCCCEEEEEEECC
T ss_conf 689867799999999808876899813899523578870799965433037----8888752655788754489999679
Q ss_pred CC
Q ss_conf 98
Q gi|254780991|r 693 IT 694 (805)
Q Consensus 693 ~t 694 (805)
..
T Consensus 591 ~~ 592 (677)
T COG1200 591 PL 592 (677)
T ss_pred CC
T ss_conf 87
No 22
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.93 E-value=8.7e-24 Score=196.71 Aligned_cols=329 Identities=19% Similarity=0.236 Sum_probs=220.1
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCE-EEEEEECCCCHHHHHHHHHHH---C
Q ss_conf 205740266678887421588775477518888884389999999988739733-799863376469999999997---1
Q gi|254780991|r 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKTFTMAKVIEA---M 192 (805)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~-qlL~GVTGSGKTevya~lI~~---~ 192 (805)
.+.|..+.| +.++-. .|+-..+|+.|.||.+||+++.+-++++... =|+-|=-|.|||||-+++.=. .
T Consensus 577 ~~~G~af~~---d~~~~~-----eFe~~FpyeET~DQl~AI~eV~~DMes~~PMDRLiCGDVGfGKTEVA~RAAFkav~~ 648 (1148)
T PRK10689 577 AKEGFAFKH---DREQYQ-----LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN 648 (1148)
T ss_pred CCCCCCCCC---CHHHHH-----HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 056886789---849999-----999609997876899999999877638867741567688887799999999999963
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCCE--EEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 99789993163468999999998678983--8998621344442101555432102210358899999999999985499
Q gi|254780991|r 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNA--VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270 (805)
Q Consensus 193 gr~aLvLvPei~La~QL~~rfk~~Fp~n~--V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~ 270 (805)
||||-||||.--||.|-|.-|++||.+=. |++. |.+- ..++.-.....|.+|+
T Consensus 649 gkQVavlvPTTiLA~QH~~tF~~Rf~~~pv~i~~L-sRf~------------------------s~ke~~~i~~~l~~G~ 703 (1148)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEML-SRFR------------------------SAKEQTQILAEAAEGK 703 (1148)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE-CCCC------------------------CHHHHHHHHHHHHCCC
T ss_conf 98089983662237999999998764157337750-3888------------------------8999999999986699
Q ss_pred CEEEECCHHHHCCCCCHHHHHCCEEEEECCCC-CCHHHHHHHHHHCCCCCCHHHHHHHHHCCCC-EEEECCCCCHHHHHH
Q ss_conf 84998277896168983477225799941981-1178753234311765633877545331872-478317888778887
Q gi|254780991|r 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS-VEQKELLSSLVKQQYKRQDIGIIRGTFRVCG-DSIEIFPSHLEDVAW 348 (805)
Q Consensus 271 ~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~-~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg-~ILdsatps~Es~~~ 348 (805)
..|||||-.-+- ----+.+|||+|+||||-= ..+++..++ ++.-. ++-=+|||==-+...
T Consensus 704 idIvIGTH~ll~-~dv~f~~LGLlIiDEEqrFGV~~KE~lk~-----------------l~~~vdvLtltATPIPRTL~m 765 (1148)
T PRK10689 704 IDILIGTHKLLQ-SDVKWKDLGLLIVDEEHRFGVRHKERIKA-----------------MRADVDILTLTATPIPRTLNM 765 (1148)
T ss_pred CCEEEHHHHHHC-CCCCCCCCCEEEECCCHHCCHHHHHHHHH-----------------CCCCCCEEEEECCCCHHHHHH
T ss_conf 877620488866-98654666437860102137999999972-----------------289987897625564469999
Q ss_pred HHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31044420022210166640011100001000000002563678875455899899899887544332110012444477
Q gi|254780991|r 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428 (805)
Q Consensus 349 Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~ 428 (805)
... -+..++... -.-..-.|..-+|...+... .
T Consensus 766 sl~----G~rdlS~i~---------tpP~~R~~v~T~v~~~~~~~-i--------------------------------- 798 (1148)
T PRK10689 766 AMS----GMRDLSIIA---------TPPARRLAVKTFVREYDSLV-V--------------------------------- 798 (1148)
T ss_pred HHC----CCCCEEEEC---------CCCCCCCCCEEEEECCCHHH-H---------------------------------
T ss_conf 880----773302213---------69998987089983587299-9---------------------------------
Q ss_pred HHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77533211201451011333114465556202330265442132101234475445432456541333235766554443
Q gi|254780991|r 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508 (805)
Q Consensus 429 dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~ 508 (805)
T Consensus 799 -------------------------------------------------------------------------------- 798 (1148)
T PRK10689 799 -------------------------------------------------------------------------------- 798 (1148)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCC-
Q ss_conf 2221110100121555454446867542013220023432012446772000013310168899999986302321246-
Q gi|254780991|r 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL- 587 (805)
Q Consensus 509 ~n~pl~f~e~~~~~~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~- 587 (805)
-+.|.....+|-.+++
T Consensus 799 ---------------------------------------------------------------~eai~re~~rggq~~~~ 815 (1148)
T PRK10689 799 ---------------------------------------------------------------REAILREILRGGQVYYL 815 (1148)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHCCEEEEE
T ss_conf ---------------------------------------------------------------99999999818808999
Q ss_pred ---CCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCC
Q ss_conf ---62147899999999863596687325764578999999997318986999845875357877711799962885674
Q gi|254780991|r 588 ---TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 (805)
Q Consensus 588 ---~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f 664 (805)
-....++++.|.+.+|+.+|.+ .||.++..+-+++|.+|..|++||||.|.++.-|+||||+.-.+|-+||+-|+
T Consensus 816 ~~~~~~i~~~~~~~~~~~p~~~~~~--~hg~m~~~~~e~~m~~f~~~~~~~l~~ttiie~g~dip~ant~ii~~a~~~gl 893 (1148)
T PRK10689 816 YNDVENIQKAAERLAELVPEARIAI--GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 (1148)
T ss_pred ECCHHHHHHHHHHHHHHCCCCCEEE--EECCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCCCCCCEEEEECHHHCCH
T ss_conf 5325419999999997487771899--98999989999999999759988999897876586677884799975321455
Q ss_pred CCCHHHHHHHHHHHCC-CCCCEEEEEECC
Q ss_conf 4460137766543127-998669998248
Q gi|254780991|r 665 LRSKTSLIQTIGRAAR-NVNSKVILYADT 692 (805)
Q Consensus 665 ~~~~~~~~q~~GRagR-~~~G~~il~ad~ 692 (805)
-.|.|-=||.|| +..+-++|.+..
T Consensus 894 ----~ql~qlrgrvgr~~~~ayaYll~~~ 918 (1148)
T PRK10689 894 ----AQLHQLRGRVGRSHHQAYAWLLTPH 918 (1148)
T ss_pred ----HHHHHHCCCCCCCCCEEEEEEEECC
T ss_conf ----7777543655778870799998678
No 23
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.93 E-value=9.4e-23 Score=188.96 Aligned_cols=329 Identities=19% Similarity=0.278 Sum_probs=220.1
Q ss_pred CEEE-EECCCCCCCHHHHHHHHHHHHHCCCCEE-EEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 5477-5188888843899999999887397337-9986337646999999999---719978999316346899999999
Q gi|254780991|r 140 FFQM-QTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFK 214 (805)
Q Consensus 140 ~f~l-~~~~~P~gdQ~~Ai~~L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk 214 (805)
.|-. .=||+||.||..||++|..-+++-.+.- ||.|==|||||.|-+=++= ..|.||.+|||.--||.|.|+.|+
T Consensus 298 k~~~~~LPF~LT~aQ~r~v~EI~~DL~~~~pMnRLlQGDVGSGKT~VA~la~l~~i~~GYQ~ALMAPTEiLA~QHy~~~~ 377 (721)
T TIGR00643 298 KFLAKSLPFELTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIESGYQVALMAPTEILAEQHYDSLR 377 (721)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 99985288877677899999999861478753222110106638999999999998469809991776899999999999
Q ss_pred HHCCC--CEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCH--HHH
Q ss_conf 86789--83899862134444210155543210221035889999999999998549984998277896168983--477
Q gi|254780991|r 215 NFFPH--NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV--ESY 290 (805)
Q Consensus 215 ~~Fp~--n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P--~~~ 290 (805)
++|+. =.|++.-+.. ....|-+....|.+|+..+||||=+=|+ -- +.+
T Consensus 378 ~~l~p~~~~vaLLTGs~-------------------------k~~~r~~~~e~i~~G~~~~~vGTHALiq---e~vef~~ 429 (721)
T TIGR00643 378 NLLAPLGIEVALLTGSL-------------------------KGKQRKELLETIASGEIHLVVGTHALIQ---EKVEFKR 429 (721)
T ss_pred HHHCCCCCEEEEEECCC-------------------------CHHHHHHHHHHHHCCCCEEEEHHHHHHH---HHHHHHC
T ss_conf 96235485788861566-------------------------7878999999986395205733135545---2144314
Q ss_pred HCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH----CCCCE-EEECCCCCHHHHHHHHCCCCCCHHHHHCCCC
Q ss_conf 225799941981117875323431176563387754533----18724-7831788877888731044420022210166
Q gi|254780991|r 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF----RVCGD-SIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365 (805)
Q Consensus 291 lglIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f----~~rg~-ILdsatps~Es~~~Rie~f~deIe~I~~fDp 365 (805)
|||+|+||=|= +|=+-|..-...|.- ...|. ++=||||== +-.++..|||.=-|
T Consensus 430 L~lVIiDEQHR-------------FGV~QR~~L~~KG~~~~~~G~~PH~L~MtATPIP--RTLALt~yGDld~S------ 488 (721)
T TIGR00643 430 LGLVIIDEQHR-------------FGVEQRKKLREKGQEGSMIGFAPHVLVMTATPIP--RTLALTVYGDLDVS------ 488 (721)
T ss_pred CCEEEEECCCC-------------CHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCH--HHHHHHHHHCCEEE------
T ss_conf 77489932335-------------6078999999862206886777776466378814--78997765000033------
Q ss_pred CCCCHHHHCCCCCCHHHHHCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 64001110000100000000256367---887545589989989988754433211001244447777533211201451
Q gi|254780991|r 366 LTGQKIRNVETIKIYANSHYVTPRPT---LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442 (805)
Q Consensus 366 lT~~~~~~~~~~~i~Pa~~~v~~~e~---l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gi 442 (805)
.++.+.....+-....+..... +..+...+.. .+...++
T Consensus 489 ----~I~elP~GR~pi~T~~~~~~~~~aW~~~v~~~~~~---------------------------E~~~GrQ------- 530 (721)
T TIGR00643 489 ----IIDELPPGRKPITTYLIKHKEKGAWIDIVYEFIEE---------------------------EIAKGRQ------- 530 (721)
T ss_pred ----EECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHH---------------------------HHHCCCC-------
T ss_conf ----43168545933899888427887756899999999---------------------------9832890-------
Q ss_pred CHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
Q ss_conf 01133311446555620233026544213210123447544543245654133323576655444322211101001215
Q gi|254780991|r 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR 522 (805)
Q Consensus 443 enyS~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~ 522 (805)
.|+.|- .||||-.. |
T Consensus 531 ----aYvv~P-------------------lI~ESE~l-------------------------p----------------- 545 (721)
T TIGR00643 531 ----AYVVYP-------------------LIEESEKL-------------------------P----------------- 545 (721)
T ss_pred ----EEEEEC-------------------CCCCCCCC-------------------------C-----------------
T ss_conf ----899964-------------------40320047-------------------------1-----------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 55454446867542013220023432012446772000013310168899999986302321246621478999999998
Q gi|254780991|r 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602 (805)
Q Consensus 523 ~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~ 602 (805)
| + -.-..+.+.|++.|
T Consensus 546 ---------------------------------~----l---------------------------k~A~~~~~~l~~~f 561 (721)
T TIGR00643 546 ---------------------------------D----L---------------------------KAAEALYERLKKAF 561 (721)
T ss_pred ---------------------------------H----H---------------------------HHHHHHHHHHHHHH
T ss_conf ---------------------------------6----8---------------------------99999999988861
Q ss_pred -HHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf -6359668732576457899999999731898699984587535787771179996288567444601377665431279
Q gi|254780991|r 603 -YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681 (805)
Q Consensus 603 -~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~ 681 (805)
++. .+.-+||-+...+.++||+.||+++.||||+|.++.=|.|+||-|+-+|.|||-=|+ -.|-|-=||.|||
T Consensus 562 ~~~~--~v~LlHGrm~~~eK~~vm~~F~~~~~~ILVsTTVIEVGVDVPnAtvMVIe~AeRFGL----SQLHQLRGRVGRG 635 (721)
T TIGR00643 562 LPKY--NVGLLHGRMKSDEKEAVMEEFREGEVDILVSTTVIEVGVDVPNATVMVIEDAERFGL----SQLHQLRGRVGRG 635 (721)
T ss_pred CCCC--EEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCEEEEECCCHHHH----HHHHHHCEEECCC
T ss_conf 2210--011330689847899999985215836999976899986179772788866551036----8887635001268
Q ss_pred -CCCEEEEEE
Q ss_conf -986699982
Q gi|254780991|r 682 -VNSKVILYA 690 (805)
Q Consensus 682 -~~G~~il~a 690 (805)
.++.++|-+
T Consensus 636 ~~~SyC~L~~ 645 (721)
T TIGR00643 636 DHQSYCLLVY 645 (721)
T ss_pred CCCCEEEEEC
T ss_conf 9750799812
No 24
>KOG0333 consensus
Probab=99.93 E-value=1.9e-23 Score=194.19 Aligned_cols=146 Identities=24% Similarity=0.361 Sum_probs=124.5
Q ss_pred CCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 12446772000013310168899999986302321246621478999999998635966873257645789999999973
Q gi|254780991|r 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 (805)
Q Consensus 550 rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~ 629 (805)
+|+-.+.-.+++-+.+.+.+.|+.-+... -..++++|+.||+.++-|++-|...|+.+.-+|+..++.+|+.+|.+||
T Consensus 487 k~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr 564 (673)
T KOG0333 487 KPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFR 564 (673)
T ss_pred CCCCCHHEEEEEECCHHHHHHHHHHHHHC--CCCCEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 98602111788815568899999999847--9998799983132489999998644324799617852778999999987
Q ss_pred CCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHH
Q ss_conf 189869998458753578777117999628856744460137766543127-9986699982489889999999
Q gi|254780991|r 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAID 702 (805)
Q Consensus 630 ~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~ 702 (805)
.|..||||+||++++|+|||||+||+||| |..+.+.|+|+|||||| |..|.||+|...-+..+.+-+.
T Consensus 565 ~~t~dIlVaTDvAgRGIDIpnVSlVinyd-----maksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLk 633 (673)
T KOG0333 565 EGTGDILVATDVAGRGIDIPNVSLVINYD-----MAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLK 633 (673)
T ss_pred HCCCCEEEEECCCCCCCCCCCCCEEEECC-----HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 15787799832212577777612146220-----5565899988742344466675368986401117789999
No 25
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.93 E-value=2.9e-22 Score=185.25 Aligned_cols=324 Identities=13% Similarity=0.153 Sum_probs=216.7
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 18888884389999999988739733799863376469999999997199789993163468999999998678983899
Q gi|254780991|r 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224 (805)
Q Consensus 145 ~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~ 224 (805)
+.|.|- |.+||..+.+ | ++++..==||+||+..|-=-.--.+..+||+.|=|+|-..-+..+++. |- .+++
T Consensus 24 ~~Fr~~--Q~e~i~~~l~----g-~D~l~~mpTG~GKSlcyQlPal~~~g~tiVisPLisLm~DQv~~L~~~-gi-~a~~ 94 (607)
T PRK11057 24 QQFRPG--QEEIIDTVLS----G-RDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLAN-GV-AAAC 94 (607)
T ss_pred CCCCHH--HHHHHHHHHC----C-CCEEEECCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHC-CC-CEEE
T ss_conf 434576--9999999986----9-988998789955979999999877998899868799999999999978-99-2999
Q ss_pred EEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHC----CCCCHHHHHCCEEEEECC
Q ss_conf 8621344442101555432102210358899999999999985499849982778961----689834772257999419
Q gi|254780991|r 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIG 300 (805)
Q Consensus 225 f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIf----gl~~P~~~lglIIvdEeh 300 (805)
+.|-.+ ..++...+..+.+|+..++..|.--+- .-.....+++++++||-|
T Consensus 95 l~s~~~-------------------------~~e~~~~~~~~~~g~~~llyvtPErl~~~~~~~~l~~~~i~~~viDEAH 149 (607)
T PRK11057 95 LNSTQT-------------------------REQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPVLLAVDEAH 149 (607)
T ss_pred ECCCCC-------------------------HHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHHHCCCCEEEEEHHH
T ss_conf 569999-------------------------9999999999975998799988558569789999971886648853066
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCH
Q ss_conf 81117875323431176563387754533187247831788877888731044420022210166640011100001000
Q gi|254780991|r 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380 (805)
Q Consensus 301 d~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~ 380 (805)
=-|.+-.-++.. |. .+...|..|-..+.+.=.||++.+.
T Consensus 150 cvs~WGhdFRp~----Y~--~l~~l~~~~~~~p~~AlTATAt~~v----------------------------------- 188 (607)
T PRK11057 150 CISQWGHDFRPE----YA--ALGQLRQRFPTLPFMALTATADDTT----------------------------------- 188 (607)
T ss_pred HHHHCCCCCHHH----HH--HHHHHHHHCCCCCEEEEEECCCHHH-----------------------------------
T ss_conf 675415500388----99--9999999769997489996368789-----------------------------------
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHH
Q ss_conf 00000256367887545589989989988754433211001244447777533211201451011333114465556202
Q gi|254780991|r 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460 (805)
Q Consensus 381 Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~t 460 (805)
..++...+ ++.+. ...... ..+|+.
T Consensus 189 -------------------~~di~~~L---------------------------------~l~~~--~~~~~~-f~RpNl 213 (607)
T PRK11057 189 -------------------RQDIVRLL---------------------------------GLNDP--LIQISS-FDRPNI 213 (607)
T ss_pred -------------------HHHHHHHH---------------------------------CCCCC--CEEECC-CCCCCC
T ss_conf -------------------99999970---------------------------------89998--078257-788874
Q ss_pred HHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 33026544213210123447544543245654133323576655444322211101001215554544468675420132
Q gi|254780991|r 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540 (805)
Q Consensus 461 L~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~~ 540 (805)
.+
T Consensus 214 ~~------------------------------------------------------------------------------ 215 (607)
T PRK11057 214 RY------------------------------------------------------------------------------ 215 (607)
T ss_pred EE------------------------------------------------------------------------------
T ss_conf 14------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHH
Q ss_conf 20023432012446772000013310168899999986302321246621478999999998635966873257645789
Q gi|254780991|r 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620 (805)
Q Consensus 541 ~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~ 620 (805)
.+.+....++.+...+... .+.-.+|++.|++.+|+|++.|...|+++...|++++..+
T Consensus 216 -------------------~v~~~~~~~~~~~~~~~~~--~~~sgIIYc~trk~~e~la~~L~~~G~~~~~YHagl~~~~ 274 (607)
T PRK11057 216 -------------------MLMEKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDV 274 (607)
T ss_pred -------------------EEEECCCHHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCHHH
T ss_conf -------------------5554477399999998706--8997799969289999999999857975453058999789
Q ss_pred HHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHH-HH
Q ss_conf 999999973189869998458753578777117999628856744460137766543127-9986699982489889-99
Q gi|254780991|r 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS-IQ 698 (805)
Q Consensus 621 r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~-~~ 698 (805)
|.++.++|..|+++|+|+|.-...|+|.|+|.+|++++ +|.|.++|.|-+||||| |.+..++||++.-+-. ..
T Consensus 275 R~~~q~~f~~~~~~vivAT~AFGMGIdk~dVR~ViH~~-----~P~s~e~yyQE~GRAGRDG~~a~c~l~y~~~D~~~~~ 349 (607)
T PRK11057 275 RADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFD-----IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 349 (607)
T ss_pred HHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCEEEECC-----CCCCHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHH
T ss_conf 99999987568875899750110576777766799778-----9999999999886352589854189985687899999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780991|r 699 LAID 702 (805)
Q Consensus 699 ~ai~ 702 (805)
+.|+
T Consensus 350 ~~i~ 353 (607)
T PRK11057 350 RCLE 353 (607)
T ss_pred HHHH
T ss_conf 9985
No 26
>KOG0338 consensus
Probab=99.92 E-value=2e-22 Score=186.47 Aligned_cols=115 Identities=20% Similarity=0.305 Sum_probs=106.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 32124662147899999999863596687325764578999999997318986999845875357877711799962885
Q gi|254780991|r 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 (805)
Q Consensus 582 ~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~ 661 (805)
..|+.||+.||+-+..|.-.|.-.|+++.-+||.++|.+|.+.|++|+.+++||||+|+++++||||++|..|+||+
T Consensus 426 ~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~--- 502 (691)
T KOG0338 426 QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYA--- 502 (691)
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCEEEEEECC---
T ss_conf 43369997208778899999987301066550541088899999987745687798720444467765516888426---
Q ss_pred CCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHH
Q ss_conf 6744460137766543127-998669998248988999999
Q gi|254780991|r 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAI 701 (805)
Q Consensus 662 ~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai 701 (805)
.|.+.+.|+||+|||+| |+.|++|+++.--+.++.+.|
T Consensus 503 --mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~i 541 (691)
T KOG0338 503 --MPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEI 541 (691)
T ss_pred --CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHH
T ss_conf --752689999874003324567643787445408899999
No 27
>KOG0335 consensus
Probab=99.92 E-value=9.7e-24 Score=196.35 Aligned_cols=119 Identities=28% Similarity=0.396 Sum_probs=110.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 32124662147899999999863596687325764578999999997318986999845875357877711799962885
Q gi|254780991|r 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 (805)
Q Consensus 582 ~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~ 661 (805)
.+.+++|+-|++++..|+.+|...++....+|++.++.+|.+.|++|+.|.+.|||+|+++|+|||||+|++|+|||
T Consensus 337 ~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyD--- 413 (482)
T KOG0335 337 WEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYD--- 413 (482)
T ss_pred CCEEEEEEECCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCEEEEEE---
T ss_conf 31389996130032699999861798745603325563799998776469866798703665478876874358863---
Q ss_pred CCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 6744460137766543127-9986699982489889999999878
Q gi|254780991|r 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETT 705 (805)
Q Consensus 662 ~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~ 705 (805)
.|.+...|+|||||||| |..|+++.|.+..+..+..++.++-
T Consensus 414 --mP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l 456 (482)
T KOG0335 414 --MPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEIL 456 (482)
T ss_pred --CCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf --6752466777415435577773268876474300689999999
No 28
>KOG0330 consensus
Probab=99.91 E-value=3e-22 Score=185.24 Aligned_cols=108 Identities=20% Similarity=0.306 Sum_probs=100.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf 21246621478999999998635966873257645789999999973189869998458753578777117999628856
Q gi|254780991|r 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 (805)
Q Consensus 583 ~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~ 662 (805)
.-++||+.|.--+.-++-.|...|+.+..+||++.+..|...++.|+.|..+|||.||+++||||+|.|.+|+|||
T Consensus 301 ~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyD---- 376 (476)
T KOG0330 301 NSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYD---- 376 (476)
T ss_pred CCEEEEEECCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHCCCCCCCCCEEEEECC----
T ss_conf 8479998346408999999986276432056603577887789987514776798613010468987710799537----
Q ss_pred CCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCH
Q ss_conf 744460137766543127-998669998248988
Q gi|254780991|r 663 GFLRSKTSLIQTIGRAAR-NVNSKVILYADTITK 695 (805)
Q Consensus 663 ~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~ 695 (805)
||.+..+||||+||+|| |+.|++|.+....+-
T Consensus 377 -iP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDv 409 (476)
T KOG0330 377 -IPTHSKDYIHRVGRTARAGRSGKAITLVTQYDV 409 (476)
T ss_pred -CCCCHHHHHHHCCCCCCCCCCCCEEEEEEHHHH
T ss_conf -898378888870430016777514898744556
No 29
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.91 E-value=5.9e-22 Score=182.99 Aligned_cols=331 Identities=22% Similarity=0.255 Sum_probs=221.9
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCE-EEEEEECCCCHHHHHHHHHHHC--
Q ss_conf 3205740266678887421588775477518888884389999999988739733-7998633764699999999971--
Q gi|254780991|r 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKTFTMAKVIEAM-- 192 (805)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~-qlL~GVTGSGKTevya~lI~~~-- 192 (805)
..+.|..+.|+. ++-. .|+-..+|+.|.||..||+++.+-+.++... -|+-|=-|=|||||-++++=.+
T Consensus 570 ~~~~G~af~~d~---~~q~-----~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~ 641 (1139)
T COG1197 570 QAKKGFAFPPDT---EWQE-----EFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM 641 (1139)
T ss_pred HHCCCCCCCCCH---HHHH-----HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 305687879985---8999-----99854998578789999999998860698661025657687599999999999863
Q ss_pred -CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf -9978999316346899999999867898389986-21344442101555432102210358899999999999985499
Q gi|254780991|r 193 -QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270 (805)
Q Consensus 193 -gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~-S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~ 270 (805)
||||.||||.--||.|=|..|++||-+=.|.+-+ |.+. ..++.-.....|.+|+
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~------------------------s~kE~~~il~~la~G~ 697 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFR------------------------SAKEQKEILKGLAEGK 697 (1139)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC------------------------CHHHHHHHHHHHHCCC
T ss_conf 7974999926078689989999987338982588860557------------------------8899999999985698
Q ss_pred CEEEECCHHHHCCCCCHHHHHCCEEEEECCC-CCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf 8499827789616898347722579994198-111787532343117656338775453318724783178887788873
Q gi|254780991|r 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGD-SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349 (805)
Q Consensus 271 ~~IVVgsrSAIfgl~~P~~~lglIIvdEehd-~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~R 349 (805)
..|||||-.-+- -.--+.+|||+|+||||- ....++..+++- ...-++-=||||---+.
T Consensus 698 vDIvIGTHrLL~-kdv~FkdLGLlIIDEEqRFGVk~KEkLK~Lr----------------~~VDvLTLSATPIPRTL--- 757 (1139)
T COG1197 698 VDIVIGTHRLLS-KDVKFKDLGLLIIDEEQRFGVKHKEKLKELR----------------ANVDVLTLSATPIPRTL--- 757 (1139)
T ss_pred CCEEEECHHHHC-CCCEEECCCEEEEECHHHCCCCHHHHHHHHH----------------CCCCEEEEECCCCCCHH---
T ss_conf 458996317647-8967704764897443532711789998775----------------05728974178875447---
Q ss_pred HCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10444200222101666400111000010000000025636788754558998998998875443321100124444777
Q gi|254780991|r 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429 (805)
Q Consensus 350 ie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~d 429 (805)
.+--.-| +.+...+ ..-...+|..-||.+......
T Consensus 758 -~Msm~Gi---RdlSvI~------TPP~~R~pV~T~V~~~d~~~i----------------------------------- 792 (1139)
T COG1197 758 -NMSLSGI---RDLSVIA------TPPEDRLPVKTFVSEYDDLLI----------------------------------- 792 (1139)
T ss_pred -HHHHHCC---HHHHHCC------CCCCCCCCEEEEEECCCHHHH-----------------------------------
T ss_conf -7777443---0331114------799877212888715882899-----------------------------------
Q ss_pred HHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 75332112014510113331144655562023302654421321012344754454324565413332357665544432
Q gi|254780991|r 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509 (805)
Q Consensus 430 le~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~ 509 (805)
T Consensus 793 -------------------------------------------------------------------------------- 792 (1139)
T COG1197 793 -------------------------------------------------------------------------------- 792 (1139)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCC--
Q ss_conf 221110100121555454446867542013220023432012446772000013310168899999986302321246--
Q gi|254780991|r 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL-- 587 (805)
Q Consensus 510 n~pl~f~e~~~~~~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~-- 587 (805)
-+.|.....+|-.++.
T Consensus 793 --------------------------------------------------------------reAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 793 --------------------------------------------------------------REAILRELLRGGQVFYVH 810 (1139)
T ss_pred --------------------------------------------------------------HHHHHHHHHCCCEEEEEE
T ss_conf --------------------------------------------------------------999999871598799994
Q ss_pred --CCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCC
Q ss_conf --621478999999998635966873257645789999999973189869998458753578777117999628856744
Q gi|254780991|r 588 --TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 (805)
Q Consensus 588 --~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~ 665 (805)
-....++++.|.+..|+++| ...||-+...+-+++|.+|-+|++||||.|.++.-|+||||+.-.+|-+||+-|.
T Consensus 811 NrV~~Ie~~~~~L~~LVPEarI--~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGL- 887 (1139)
T COG1197 811 NRVESIEKKAERLRELVPEARI--AVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGL- 887 (1139)
T ss_pred CCCCCHHHHHHHHHHHCCCEEE--EEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCH-
T ss_conf 3331299999999985984688--8852588889999999999728888898823430476777875588965433457-
Q ss_pred CCHHHHHHHHHHHCC-CCCCEEEEEEC
Q ss_conf 460137766543127-99866999824
Q gi|254780991|r 666 RSKTSLIQTIGRAAR-NVNSKVILYAD 691 (805)
Q Consensus 666 ~~~~~~~q~~GRagR-~~~G~~il~ad 691 (805)
-.|.|-=||.|| +..|-+++.+.
T Consensus 888 ---sQLyQLRGRVGRS~~~AYAYfl~p 911 (1139)
T COG1197 888 ---AQLYQLRGRVGRSNKQAYAYFLYP 911 (1139)
T ss_pred ---HHHHHHCCCCCCCCCEEEEEEEEC
T ss_conf ---888875165477676289999626
No 30
>KOG0328 consensus
Probab=99.91 E-value=7.7e-23 Score=189.62 Aligned_cols=330 Identities=22% Similarity=0.275 Sum_probs=211.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHH----HH--HCCCCEEEEECCHHHHHHHHHHHHHHCCCCE
Q ss_conf 88884389999999988739733799863376469999999----99--7199789993163468999999998678983
Q gi|254780991|r 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV----IE--AMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 (805)
Q Consensus 148 ~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~l----I~--~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~ 221 (805)
+|+.=|+.||-.|..| +..+-..-.|+|||-+|.-- +. ...-|||||+|.--||.|+-.-..+.=+.--
T Consensus 49 kPS~IQqrAi~~IlkG-----rdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn 123 (400)
T KOG0328 49 KPSAIQQRAIPQILKG-----RDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMN 123 (400)
T ss_pred CCHHHHHHHHHHHHCC-----CCEEEEECCCCCCEEEEEEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCC
T ss_conf 8167776102456336-----61478704788844789866314034342003578954708999999999998324236
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCC---CC-HHHHHCCEEEE
Q ss_conf 899862134444210155543210221035889999999999998549984998277896168---98-34772257999
Q gi|254780991|r 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI---GS-VESYSQMIVQL 297 (805)
Q Consensus 222 V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl---~~-P~~~lglIIvd 297 (805)
|-.| +... .-++.++|.. +..-..+|.||.--||-+ +. --....|++.|
T Consensus 124 vq~h-acig-----------------g~n~gedikk---------ld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLD 176 (400)
T KOG0328 124 VQCH-ACIG-----------------GKNLGEDIKK---------LDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLD 176 (400)
T ss_pred CEEE-EEEC-----------------CCCCCHHHHH---------HCCCCEEEECCCCHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 4489-8735-----------------7751034565---------32561475079815999998623101142689854
Q ss_pred ECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCC
Q ss_conf 41981117875323431176563387754533187247831788877888731044420022210166640011100001
Q gi|254780991|r 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 (805)
Q Consensus 298 Eehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~ 377 (805)
|..+-.++ -+..|. | .+.|---..+-+++=|||-.-|-. +.+..|-+.
T Consensus 177 EaDemL~k-gfk~Qi----y-----diyr~lp~~~Qvv~~SATlp~eil-----------emt~kfmtd----------- 224 (400)
T KOG0328 177 EADEMLNK-GFKEQI----Y-----DIYRYLPPGAQVVLVSATLPHEIL-----------EMTEKFMTD----------- 224 (400)
T ss_pred CHHHHHHH-HHHHHH----H-----HHHHHCCCCCEEEEEECCCCHHHH-----------HHHHHHCCC-----------
T ss_conf 58999875-677889----9-----999847998669999645869999-----------999874488-----------
Q ss_pred CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 00000000256367887545589989989988754433211001244447777533211201451011333114465556
Q gi|254780991|r 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 (805)
Q Consensus 378 ~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~ 457 (805)
|.+.++-+.+ -.+|-+.+.-.....|++ .
T Consensus 225 ---pvrilvkrde-------------------------------------ltlEgIKqf~v~ve~Eew-----------K 253 (400)
T KOG0328 225 ---PVRILVKRDE-------------------------------------LTLEGIKQFFVAVEKEEW-----------K 253 (400)
T ss_pred ---CEEEEEECCC-------------------------------------CCHHHHHHHEEEECHHHH-----------H
T ss_conf ---5268870577-------------------------------------766665554244132255-----------3
Q ss_pred CHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 20233026544213210123447544543245654133323576655444322211101001215554544468675420
Q gi|254780991|r 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537 (805)
Q Consensus 458 P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~ 537 (805)
--+|||-+. +.|
T Consensus 254 fdtLcdLYd--------------------------------------------------------------~Lt------ 265 (400)
T KOG0328 254 FDTLCDLYD--------------------------------------------------------------TLT------ 265 (400)
T ss_pred HHHHHHHHH--------------------------------------------------------------HHE------
T ss_conf 768988864--------------------------------------------------------------306------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 13220023432012446772000013310168899999986302321246621478999999998635966873257645
Q gi|254780991|r 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 (805)
Q Consensus 538 e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~ 617 (805)
+ -...+|+.||+.++-|++-+.+..+.+..||+|+.
T Consensus 266 -------I-------------------------------------tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~ 301 (400)
T KOG0328 266 -------I-------------------------------------TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDME 301 (400)
T ss_pred -------H-------------------------------------HEEEEEECCCCHHHHHHHHHHHHCCEEEECCCCCC
T ss_conf -------1-------------------------------------14799962640436889998861733663057764
Q ss_pred HHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHH
Q ss_conf 789999999973189869998458753578777117999628856744460137766543127-9986699982489889
Q gi|254780991|r 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696 (805)
Q Consensus 618 ~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~ 696 (805)
+.+|++|+++||.|+-.|||.|++-|+|+|+|.|+||+||| +|.+-+.|||+|||+|| |++|.+|-| +...
T Consensus 302 qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYD-----LP~nre~YIHRIGRSGRFGRkGvainF---Vk~~ 373 (400)
T KOG0328 302 QKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF---VKSD 373 (400)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCEEEEEEECC-----CCCCHHHHHHHHCCCCCCCCCCEEEEE---ECHH
T ss_conf 56799999876547834999710444258750057899437-----885487876650135656776069987---5178
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999998788888888
Q gi|254780991|r 697 IQLAIDETTRRREKQL 712 (805)
Q Consensus 697 ~~~ai~e~~rrr~~q~ 712 (805)
..+.++++++....|+
T Consensus 374 d~~~lrdieq~yst~i 389 (400)
T KOG0328 374 DLRILRDIEQYYSTQI 389 (400)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 8999999999976411
No 31
>KOG0344 consensus
Probab=99.91 E-value=1.2e-21 Score=180.76 Aligned_cols=119 Identities=32% Similarity=0.414 Sum_probs=107.1
Q ss_pred CCCCCHHHHHHHHHHHHH-HHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCC
Q ss_conf 246621478999999998-6359668732576457899999999731898699984587535787771179996288567
Q gi|254780991|r 585 ILLTVLTKRMAEDLTEYL-YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 (805)
Q Consensus 585 ~l~~~~tkr~~e~l~~~~-~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~ 663 (805)
++++.-++..+.+|...| --.+|.+..+|++.++.+|++.+..||.|+++|||.|+++++|+||-+|.+|+|+|
T Consensus 390 ~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD----- 464 (593)
T KOG0344 390 VLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYD----- 464 (593)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCCCCCCEEEECC-----
T ss_conf 489885388899999986423576634676366666778999998506706888504665455645763689537-----
Q ss_pred CCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 44460137766543127-9986699982489889999999878888
Q gi|254780991|r 664 FLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRR 708 (805)
Q Consensus 664 f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr 708 (805)
||.+.-+|+|+|||+|| |..|++|+|+..-+....+.+.++-+.-
T Consensus 465 ~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~s 510 (593)
T KOG0344 465 FPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQS 510 (593)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 8722478888730257889886169986325534555689999971
No 32
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.91 E-value=7.4e-20 Score=167.29 Aligned_cols=435 Identities=18% Similarity=0.216 Sum_probs=254.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCCC--CEEEEEE
Q ss_conf 389999999988739733799863376469999999997----1997899931634689999999986789--8389986
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFPH--NAVEYFV 226 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp~--n~V~~f~ 226 (805)
|+.-.+....+ +.-++.+|+-==||=|||++-+=+|+. .++.+|+|+|.+-|..|-+.-|+.+++- +.+.-|
T Consensus 15 e~R~YQ~~i~a-~al~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~l- 92 (542)
T COG1111 15 EPRLYQLNIAA-KALFKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAAL- 92 (542)
T ss_pred CHHHHHHHHHH-HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHEEEE-
T ss_conf 58899999999-9864483899528750799999999999874588489965895179999999999858984332311-
Q ss_pred ECCCCCCCCCCCCCCCCCHHHHCCCCHHHH-HHHHHHHHHHHCCCCEEEECCHHHHC-----CCCCHHHHHCCEEEEECC
Q ss_conf 213444421015554321022103588999-99999999985499849982778961-----689834772257999419
Q gi|254780991|r 227 SYYDYYQPEAYVPRTDTYIEKESSINEQID-RMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIG 300 (805)
Q Consensus 227 S~~~~yqpEay~p~~d~~i~k~~s~n~~i~-~~R~~a~~~l~~~~~~IVVgsrSAIf-----gl~~P~~~lglIIvdEeh 300 (805)
+.++. .+|...|. +..|+|+|.--|. |...| +..-++|.||.|
T Consensus 93 -------------------------tGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~-~dv~~lifDEAH 141 (542)
T COG1111 93 -------------------------TGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDL-DDVSLLIFDEAH 141 (542)
T ss_pred -------------------------CCCCCHHHHHHHHH-----HCCEEEECCHHHHHHHHCCCCCH-HHCEEEEECHHH
T ss_conf -------------------------17778688999875-----17789956387776876176676-780589862355
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEC-CCCCHHH--H-HHHHCCCCCCHHHHHCCCCCCCCHHHHCCC
Q ss_conf 81117875323431176563387754533187247831-7888778--8-873104442002221016664001110000
Q gi|254780991|r 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI-FPSHLED--V-AWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 (805)
Q Consensus 301 d~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILds-atps~Es--~-~~Rie~f~deIe~I~~fDplT~~~~~~~~~ 376 (805)
-.. -.|.=+++|..--.+...+.|+|. |+|..+. . -+.-+++-..|+-..+-|+.-.+=+...+-
T Consensus 142 RAv-----------GnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kv 210 (542)
T COG1111 142 RAV-----------GNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKV 210 (542)
T ss_pred HCC-----------CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCEE
T ss_conf 413-----------760699999999982568437987238999879999999837954289845788517775140424
Q ss_pred CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH--HCC---
Q ss_conf 100000000256367887545589989989988754433211001244447777533211201451011333--114---
Q gi|254780991|r 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY--LTG--- 451 (805)
Q Consensus 377 ~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~--L~~--- 451 (805)
-++ -|..++.+..+...+...+..++..++..+.......+.++....+- ..+.....+. .-++| +.+
T Consensus 211 e~i-----kV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~-~~~~~~a~~~-~~~~~~~l~~~a~ 283 (542)
T COG1111 211 EWI-----KVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELR-QIRLIMAKNE-DSDKFRLLSVLAE 283 (542)
T ss_pred EEE-----ECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHH-HHHHHHCCCC-CHHHHHHHHHHHH
T ss_conf 899-----63685899999999999999999999976953235731076899999-9899863576-1788899999999
Q ss_pred ----CCCC-----CCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
Q ss_conf ----4655-----5620233026544213210123447544543245654133323576655444322211101001215
Q gi|254780991|r 452 ----RNPG-----EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR 522 (805)
Q Consensus 452 ----r~~g-----e~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~ 522 (805)
...- +-...++.|+-+ +.+.... ++..+-|.-+.+.- |...
T Consensus 284 ~~kl~~a~elletqGi~~~~~Yl~~-----l~e~~~~--------~~sk~a~~l~~d~~----------------~~~a- 333 (542)
T COG1111 284 AIKLAHALELLETQGIRPFYQYLEK-----LEEEATK--------GGSKAAKSLLADPY----------------FKRA- 333 (542)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHH-----HHHHHCC--------CCHHHHHHHHCCHH----------------HHHH-
T ss_conf 9888899999985086999999999-----9987503--------52077898753820----------------4799-
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHH--HCCCCCCCCCHHHHHHHHHHH
Q ss_conf 554544468675420132200234320124467720000133101688999999863--023212466214789999999
Q gi|254780991|r 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA--QQGLRILLTVLTKRMAEDLTE 600 (805)
Q Consensus 523 ~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~--~~~~R~l~~~~tkr~~e~l~~ 600 (805)
+ . ...+. .+.+.--| .++.+.+.+.+.. ..+.|++|||--.-.+|.+.+
T Consensus 334 --------------l----~-~~~~~-~~~~v~HP---------Kl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~ 384 (542)
T COG1111 334 --------------L----R-LLIRA-DESGVEHP---------KLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVN 384 (542)
T ss_pred --------------H----H-HHHHH-CCCCCCCC---------CHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHH
T ss_conf --------------9----9-99974-00368896---------189999999999723898559999614758999999
Q ss_pred HHHHCCCEEE---------ECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 9863596687---------3257645789999999973189869998458753578777117999628856744460137
Q gi|254780991|r 601 YLYERNIRVR---------YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 (805)
Q Consensus 601 ~~~~~~i~~~---------~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~ 671 (805)
+|...|+.+. .-+.+++|.+..+++++|++|+++|||+|.+..+|||||+|.+|+-|+| -.|+=-.
T Consensus 385 ~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEp-----vpSeIR~ 459 (542)
T COG1111 385 FLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEP-----VPSEIRS 459 (542)
T ss_pred HHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECC-----CCHHHHH
T ss_conf 99852875206886114545566658889999999986578518998123224678876567999568-----8578899
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 7665431279986699982489889999999
Q gi|254780991|r 672 IQTIGRAARNVNSKVILYADTITKSIQLAID 702 (805)
Q Consensus 672 ~q~~GRagR~~~G~~il~ad~~t~~~~~ai~ 702 (805)
|||.|||||.++|+|++....-|..+.++-.
T Consensus 460 IQR~GRTGR~r~Grv~vLvt~gtrdeayy~~ 490 (542)
T COG1111 460 IQRKGRTGRKRKGRVVVLVTEGTRDEAYYYS 490 (542)
T ss_pred HHHHCCCCCCCCCEEEEEEECCCHHHHHHHH
T ss_conf 9860744557797499999658627899999
No 33
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=99.90 E-value=4.6e-22 Score=183.76 Aligned_cols=323 Identities=21% Similarity=0.282 Sum_probs=218.3
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCE-EEEEEECCCCHHHHHHHHHHHC---
Q ss_conf 205740266678887421588775477518888884389999999988739733-7998633764699999999971---
Q gi|254780991|r 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKTFTMAKVIEAM--- 192 (805)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~-qlL~GVTGSGKTevya~lI~~~--- 192 (805)
...|..+.|| .++-. .|+=..||++|.||-+||+++.+-+.+.... =|+=|=-|=|||||-.+++=.+
T Consensus 485 ~~~G~af~~D---~e~~~-----~Fe~~FPfeeT~DQ~~AI~eik~Dm~~~~~MDRL~CGDVGfGKTEVAmRAaFkAv~~ 556 (997)
T TIGR00580 485 ASKGHAFPPD---DEWQA-----EFEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD 556 (997)
T ss_pred HCCCCCCCCC---HHHHH-----HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 1589889888---08999-----999838788977899999999997406898734652454885368888788876338
Q ss_pred C----CCEEEEECCHHHHHHHHHHHHHHCCCC--EEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 9----978999316346899999999867898--3899862134444210155543210221035889999999999998
Q gi|254780991|r 193 Q----RPAIVMAPNKILAAQLYSEFKNFFPHN--AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266 (805)
Q Consensus 193 g----r~aLvLvPei~La~QL~~rfk~~Fp~n--~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l 266 (805)
| |||.||||.--||.|=|..|++||-+= .|+....+-+ ..+--+....|
T Consensus 557 gneylKQVavLVPTT~LA~QHf~tf~~RF~~fPv~I~~LSRF~~-------------------------~~E~~~iL~~l 611 (997)
T TIGR00580 557 GNEYLKQVAVLVPTTILAQQHFETFKERFANFPVTIELLSRFRS-------------------------AKEKKEILKEL 611 (997)
T ss_pred CCCEECEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-------------------------CHHHHHHHHHH
T ss_conf 78220116896270442777889999973789816875277567-------------------------37899999997
Q ss_pred HCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCC-CCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEE-ECCCCCHH
Q ss_conf 54998499827789616898347722579994198-11178753234311765633877545331872478-31788877
Q gi|254780991|r 267 LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD-SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI-EIFPSHLE 344 (805)
Q Consensus 267 ~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd-~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~IL-dsatps~E 344 (805)
.+|+..|||||=-=| +-..-++||||+|+||||= .+..++..|+ ++.-.||| =||||
T Consensus 612 a~G~iDI~IGTH~lL-~k~v~FKdLGLlIiDEEQRFGV~~KE~lK~-----------------~~~~VDvLtlsATP--- 670 (997)
T TIGR00580 612 ASGKIDILIGTHKLL-QKDVKFKDLGLLIIDEEQRFGVKQKEKLKE-----------------LKTSVDVLTLSATP--- 670 (997)
T ss_pred HCCCEEEEECCHHHH-CCCEEEECCCCEEEECCCCCCCCHHHHHCC-----------------CCCCCCEEEEECCC---
T ss_conf 559422663010412-785468638646983143488311555300-----------------15676567633789---
Q ss_pred HHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888731044420022210166640011100001000000-----002563678875455899899899887544332110
Q gi|254780991|r 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS-----HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419 (805)
Q Consensus 345 s~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~-----~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea 419 (805)
.|--..+- ...+.+++.+..+|.. =||.+.+...
T Consensus 671 -IPRTL~MS--------------l~g~RdlS~I~TPP~~R~pv~T~v~~~~~~~-------------------------- 709 (997)
T TIGR00580 671 -IPRTLHMS--------------LSGIRDLSIIATPPEDRLPVRTFVMEYDDEL-------------------------- 709 (997)
T ss_pred -CHHHHHHH--------------HHHHHHHHHCCCCCCCCCCEEEEEECCCHHH--------------------------
T ss_conf -60558999--------------8755332210578887742488774278689--------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01244447777533211201451011333114465556202330265442132101234475445432456541333235
Q gi|254780991|r 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499 (805)
Q Consensus 420 ~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~ 499 (805)
T Consensus 710 -------------------------------------------------------------------------------- 709 (997)
T TIGR00580 710 -------------------------------------------------------------------------------- 709 (997)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 76655444322211101001215554544468675420132200234320124467720000133101688999999863
Q gi|254780991|r 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579 (805)
Q Consensus 500 ~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~ 579 (805)
+=+.|+...
T Consensus 710 -----------------------------------------------------------------------~~~AI~rEL 718 (997)
T TIGR00580 710 -----------------------------------------------------------------------VREAIRREL 718 (997)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
T ss_conf -----------------------------------------------------------------------999999753
Q ss_pred HCCCCCCCC----CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEE
Q ss_conf 023212466----2147899999999863596687325764578999999997318986999845875357877711799
Q gi|254780991|r 580 QQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 (805)
Q Consensus 580 ~~~~R~l~~----~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~ 655 (805)
.+|-++++- -.-.+.++.|.+.-|+++|. ..||-+...+-++||.+|..|++||||.|-++-=|+||||+--.+
T Consensus 719 ~RgGQvFyv~Nrie~i~~~~~~l~~LVP~arIa--iaHGqM~e~eLE~~m~~F~~~~~~vLvcTTIIE~GIDIPnANTiI 796 (997)
T TIGR00580 719 LRGGQVFYVHNRIESIEKLKTQLRELVPEARIA--IAHGQMTENELEEVMLEFYKGEFDVLVCTTIIESGIDIPNANTII 796 (997)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEE--EEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCHHHHHHHH
T ss_conf 139818998088135789999998508432678--883356845689999986268433013221465056410012686
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEEC
Q ss_conf 9628856744460137766543127-99866999824
Q gi|254780991|r 656 ILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691 (805)
Q Consensus 656 i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad 691 (805)
|-+||+=|+ -.|.|-=||.|| +..|-|+|.+.
T Consensus 797 i~~AD~FGL----aQLYQLRGRVGRs~~~AYAYlL~~ 829 (997)
T TIGR00580 797 IDRADKFGL----AQLYQLRGRVGRSKKKAYAYLLYP 829 (997)
T ss_pred HHHHCCCCH----HHHHHCCCEECCCCCEEEEEECCC
T ss_conf 875211470----347453631205871268983347
No 34
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.90 E-value=3e-20 Score=170.19 Aligned_cols=324 Identities=20% Similarity=0.275 Sum_probs=217.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8884389999999988739733799863376469999999997---1997899931634689999999986789838998
Q gi|254780991|r 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 (805)
Q Consensus 149 P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f 225 (805)
-+.-|..|-..|++.+++. .+.++|.||||||||++-+.|+. .|--+.+-+|-+...-.||.||+.-|.+..+...
T Consensus 98 Ls~~Q~~as~~l~q~i~~k-~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 98 LSPGQKKASNQLVQYIKQK-EDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 2724789999999998715-768999742798510169999999965986998468610117778999976214986667
Q ss_pred EECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCH
Q ss_conf 62134444210155543210221035889999999999998549984998277896168983477225799941981117
Q gi|254780991|r 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305 (805)
Q Consensus 226 ~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~ 305 (805)
|.-++-| .+..+||+|.--++ -=.+-..++|+||+.-=-
T Consensus 177 yg~S~~~------------------------------------fr~plvVaTtHQLl---rFk~aFD~liIDEVDAFP-- 215 (441)
T COG4098 177 YGDSDSY------------------------------------FRAPLVVATTHQLL---RFKQAFDLLIIDEVDAFP-- 215 (441)
T ss_pred ECCCCHH------------------------------------CCCCEEEEEHHHHH---HHHHHCCEEEEECCCCCC--
T ss_conf 2587131------------------------------------33447997668888---888643389983024565--
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHC
Q ss_conf 87532343117656338775453318724783178887788873104442002221016664001110000100000000
Q gi|254780991|r 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385 (805)
Q Consensus 306 ~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~ 385 (805)
+.....++| |+..+.-.....|.=+|||.-+-- +-
T Consensus 216 ---~~~d~~L~~-----Av~~ark~~g~~IylTATp~k~l~--r~----------------------------------- 250 (441)
T COG4098 216 ---FSDDQSLQY-----AVKKARKKEGATIYLTATPTKKLE--RK----------------------------------- 250 (441)
T ss_pred ---CCCCHHHHH-----HHHHHHCCCCCEEEEECCCHHHHH--HH-----------------------------------
T ss_conf ---667888999-----999751236736999648807888--87-----------------------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCC
Q ss_conf 25636788754558998998998875443321100124444777753321120145101133311446555620233026
Q gi|254780991|r 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465 (805)
Q Consensus 386 v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~ 465 (805)
.. .++ . +...+ +.-||..
T Consensus 251 ------------------------~~-~g~---~-------------------------~~~kl---------p~RfH~~ 268 (441)
T COG4098 251 ------------------------IL-KGN---L-------------------------RILKL---------PARFHGK 268 (441)
T ss_pred ------------------------HH-HCC---E-------------------------EEEEC---------CHHHCCC
T ss_conf ------------------------54-077---5-------------------------67634---------4654389
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 54421321012344754454324565413332357665544432221110100121555454446867542013220023
Q gi|254780991|r 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545 (805)
Q Consensus 466 p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~~~~~~~ 545 (805)
.+|...-+|.++..+|.. ....|
T Consensus 269 -------------pLpvPkf~w~~~~~k~l~-----------r~kl~--------------------------------- 291 (441)
T COG4098 269 -------------PLPVPKFVWIGNWNKKLQ-----------RNKLP--------------------------------- 291 (441)
T ss_pred -------------CCCCCCEEEECCHHHHHH-----------HCCCC---------------------------------
T ss_conf -------------989874288644777766-----------44477---------------------------------
Q ss_pred HHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-HHCCCEE-EECCCCCCHHHHHH
Q ss_conf 432012446772000013310168899999986302321246621478999999998-6359668-73257645789999
Q gi|254780991|r 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL-YERNIRV-RYMHSEVKTLERIE 623 (805)
Q Consensus 546 eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~-~~~~i~~-~~~h~~~~~~~r~~ 623 (805)
-.|..=|.+....++-+|+|..+..+.|.+++.| ....... .+.||. ...|.+
T Consensus 292 -----------------------~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~E 346 (441)
T COG4098 292 -----------------------LKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKE 346 (441)
T ss_pred -----------------------HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECC--CCCHHH
T ss_conf -----------------------8999999998743882899925058899999999861886421565336--701789
Q ss_pred HHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC---CCEEEEEECCCCHHHHHH
Q ss_conf 99997318986999845875357877711799962885674446013776654312799---866999824898899999
Q gi|254780991|r 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLA 700 (805)
Q Consensus 624 il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~~---~G~~il~ad~~t~~~~~a 700 (805)
.++.||+|++++||.|.+|.||.-||+|. |+|++|...-| ++.+|||.+||+||.. .|.|++|.+.++.+|.+|
T Consensus 347 kV~~fR~G~~~lLiTTTILERGVTfp~vd-V~Vlgaeh~vf--TesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A 423 (441)
T COG4098 347 KVEAFRDGKITLLITTTILERGVTFPNVD-VFVLGAEHRVF--TESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQA 423 (441)
T ss_pred HHHHHHCCCEEEEEEEEHHHCCCCCCCCE-EEEECCCCCCC--CHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHH
T ss_conf 99998758638999844033266435623-99954776420--1889999752316787689875899964633899999
Q ss_pred HHHHHH
Q ss_conf 998788
Q gi|254780991|r 701 IDETTR 706 (805)
Q Consensus 701 i~e~~r 706 (805)
+.|+.+
T Consensus 424 ~keIk~ 429 (441)
T COG4098 424 RKEIKE 429 (441)
T ss_pred HHHHHH
T ss_conf 999999
No 35
>KOG0340 consensus
Probab=99.89 E-value=4.3e-20 Score=169.07 Aligned_cols=115 Identities=27% Similarity=0.364 Sum_probs=106.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf 21246621478999999998635966873257645789999999973189869998458753578777117999628856
Q gi|254780991|r 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 (805)
Q Consensus 583 ~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~ 662 (805)
.-+.+|+.|.+-++-|+-.|.+.++++..+||.+.|.+|...|..||.+.+.|||+||++++|||||.|.||+|+|
T Consensus 255 ~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~d---- 330 (442)
T KOG0340 255 GSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHD---- 330 (442)
T ss_pred CEEEEEEEHHHHHHHHHHHHHHHCEEEEEHHHCCHHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCEEEEEECC----
T ss_conf 6089996046899999999963034454311005088899899877626740899731343278988446787068----
Q ss_pred CCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHH
Q ss_conf 744460137766543127-9986699982489889999999
Q gi|254780991|r 663 GFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAID 702 (805)
Q Consensus 663 ~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~ 702 (805)
.|++.+.|||+.||++| |+.|-+|.+.+..+-...+||+
T Consensus 331 -iPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE 370 (442)
T KOG0340 331 -IPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIE 370 (442)
T ss_pred -CCCCHHHHHHHHCCHHCCCCCCCEEEEECHHHHHHHHHHH
T ss_conf -8998788887603012056776428986242279999999
No 36
>KOG0346 consensus
Probab=99.88 E-value=2.9e-20 Score=170.35 Aligned_cols=116 Identities=22% Similarity=0.301 Sum_probs=103.3
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHH-------------
Q ss_conf 9998630232124662147899999999863596687325764578999999997318986999845-------------
Q gi|254780991|r 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN------------- 640 (805)
Q Consensus 574 ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~------------- 640 (805)
.+-+..-...++++|+.|.-+.-.|.-+|...||+.--+.|.+..+.|..|+++|..|-|||+|+||
T Consensus 260 allKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~k 339 (569)
T KOG0346 260 ALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVK 339 (569)
T ss_pred HHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCC
T ss_conf 99999886275499985002468899999980737665256466432122898860761159997067641355521112
Q ss_pred ----------------------HHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCC
Q ss_conf ----------------------8753578777117999628856744460137766543127-99866999824898
Q gi|254780991|r 641 ----------------------LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTIT 694 (805)
Q Consensus 641 ----------------------~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t 694 (805)
=++||+||.+|+-|.|+| ||.+.++||||+||||| |..|.++.|.-+-.
T Consensus 340 gk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD-----~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e 411 (569)
T KOG0346 340 GKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFD-----FPETVTSYIHRVGRTARGNNKGTALSFVSPKE 411 (569)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHCHHCCCCCHHEEEEEECC-----CCCCHHHHHHHCCCCCCCCCCCCEEEEECCHH
T ss_conf 5444568877421244457011212165401211456137-----89854788886122234789872599966467
No 37
>KOG0354 consensus
Probab=99.88 E-value=2e-19 Score=164.03 Aligned_cols=458 Identities=17% Similarity=0.165 Sum_probs=224.2
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHH
Q ss_conf 87754775188888843899999999-887397337998633764699999999971-----997899931634689999
Q gi|254780991|r 137 DITFFQMQTDYHPSGDQPAAIAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKILAAQLY 210 (805)
Q Consensus 137 ~~~~f~l~~~~~P~gdQ~~Ai~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~~~-----gr~aLvLvPei~La~QL~ 210 (805)
+..+.....++.+-.=|.+ |++ ++ | +-.++.==|||||||+-|.++.+. +-.+++|||.+-|-.|..
T Consensus 51 ~~~~~~~p~~~~lR~YQ~e----ivq~AL--g-kNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~ 123 (746)
T KOG0354 51 AAQRWIYPTNLELRNYQEE----LVQPAL--G-KNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQI 123 (746)
T ss_pred HHCCCCCCCCCCCCHHHHH----HHHHHH--C-CCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHH
T ss_conf 4144104676656078999----867862--6-87699953599861047999999972377643899607711788889
Q ss_pred HHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCH---HHHC-CCCC
Q ss_conf 99998678983899862134444210155543210221035889999999999998549984998277---8961-6898
Q gi|254780991|r 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV---SCIY-GIGS 286 (805)
Q Consensus 211 ~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsr---SAIf-gl~~ 286 (805)
.+|+.++-.-.|--.++.- +|.+. |...| .-++++++.+- ..|- |...
T Consensus 124 a~~~~~~~~~~~T~~l~~~--------~~~~~----------------r~~i~----~s~~vff~TpQil~ndL~~~~~~ 175 (746)
T KOG0354 124 ACFSIYLIPYSVTGQLGDT--------VPRSN----------------RGEIV----ASKRVFFRTPQILENDLKSGLHD 175 (746)
T ss_pred HHHHHCCCCCCCEEECCCC--------CCCCC----------------HHHHH----CCCCEEEECHHHHHHHCCCCCCC
T ss_conf 8876206760104550575--------68876----------------24531----02635896727634332543345
Q ss_pred HHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHCCCCCCHHHHHCCCC
Q ss_conf 347722579994198111787532343117656338775453318724783-1788877888731044420022210166
Q gi|254780991|r 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE-IFPSHLEDVAWRVSMFGNDIEEISEFYP 365 (805)
Q Consensus 287 P~~~lglIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILd-satps~Es~~~Rie~f~deIe~I~~fDp 365 (805)
+++..-++|+||.|-...... |.-.-.. .........=||| +|||... ..-..+.-+...-+|....-
T Consensus 176 ~ls~fs~iv~DE~Hra~kn~~---------Y~~Vmr~-~l~~k~~~~qILgLTASpG~~-~~~v~~~I~~L~asldvr~~ 244 (746)
T KOG0354 176 ELSDFSLIVFDECHRTSKNHP---------YNNIMRE-YLDLKNQGNQILGLTASPGSK-LEQVQNVIDNLCASLDVRTE 244 (746)
T ss_pred CCCEEEEEEECCCCCCCCCCC---------HHHHHHH-HHHHHHCCCCEEEEECCCCCC-HHHHHHHHHHHHEECCCCHH
T ss_conf 455179999722244555661---------7999999-998651466179985588845-89999999852033255504
Q ss_pred CC-CCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCCC
Q ss_conf 64-00111000010000000025636788754558998998998875443321100124444---777753321120145
Q gi|254780991|r 366 LT-GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI---TYDLEMLETTGSCQS 441 (805)
Q Consensus 366 lT-~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~---~~dle~l~e~G~~~g 441 (805)
.| .............|. + +......+...+..-+..+..........++..+. .+-..+.+.
T Consensus 245 ssi~~~y~~lr~~~~i~v-------~-~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~------ 310 (746)
T KOG0354 245 SSIKSNYEELREHVQIPV-------D-LSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEK------ 310 (746)
T ss_pred HHHHHHHHHHHCCCCCCC-------C-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH------
T ss_conf 456541898724675247-------5-88764113436999999999999863854102433344440433002------
Q ss_pred CCHHHHHHCCCCCCCCC--HHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 10113331144655562--0233026544213210123447544543245654133323576655444322211101001
Q gi|254780991|r 442 IENYSRYLTGRNPGEPP--PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519 (805)
Q Consensus 442 ienyS~~L~~r~~ge~P--~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~ 519 (805)
+.+-...+ .+. .+.++++..+. ..+..+|-|+-.+++-.--.++++.
T Consensus 311 ----~~~~~~~~--~q~~~f~~~~~~~~~~-------------------------~ll~~~gir~~~~l~~~~~f~~e~~ 359 (746)
T KOG0354 311 ----AAAPNGPE--NQRNCFYALHLRKYNL-------------------------ALLISDGIRFVDALDYLEDFYEEVA 359 (746)
T ss_pred ----HHCCCCCC--CCHHHHHHHHHHHHHH-------------------------HHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf ----22368874--3203678999998788-------------------------8876323403777765554300000
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 21555454446867542013220023432-01244677200001331016889999998630232124662147899999
Q gi|254780991|r 520 CLRPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598 (805)
Q Consensus 520 ~~~~~~~~~satPg~~e~e~~~~~~~eqi-~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l 598 (805)
...-...+..+-+ ...+.+.+ ....-..||+ ...|.-..+.+.+-+..+ ....-|+.+||.|+..|+.|
T Consensus 360 ~~k~~~~~~e~~~--------~~~~~~~m~~~~~l~~~~~-~~npkle~l~~~l~e~f~-~~~dsR~IIFve~R~sa~~l 429 (746)
T KOG0354 360 LKKYLKLELEARL--------IRNFTENMNELEHLSLDPP-KENPKLEKLVEILVEQFE-QNPDSRTIIFVETRESALAL 429 (746)
T ss_pred HHHHHHHHHCCHH--------HHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHH-CCCCCCEEEEEEHHHHHHHH
T ss_conf 4678898742210--------6778898876443202787-668469999999999860-59885079997328899999
Q ss_pred HHHHH---HCCCEEEECCC--------CCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 99986---35966873257--------64578999999997318986999845875357877711799962885674446
Q gi|254780991|r 599 TEYLY---ERNIRVRYMHS--------EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 (805)
Q Consensus 599 ~~~~~---~~~i~~~~~h~--------~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~ 667 (805)
..++. ..||+...+-| .+++.+..++|++|+.|+++|||+|-+..+|||||+|.||+-|| .-.+
T Consensus 430 ~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd-----~~sn 504 (746)
T KOG0354 430 KKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYD-----YSSN 504 (746)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCCEEEEEC-----CCCC
T ss_conf 99997540135440215603544544445789999999998579802799810100467742112899965-----7766
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 0137766543127998669998248988999999
Q gi|254780991|r 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701 (805)
Q Consensus 668 ~~~~~q~~GRagR~~~G~~il~ad~~t~~~~~ai 701 (805)
+-..||+.|| ||-++|++++.+.........-.
T Consensus 505 pIrmIQrrGR-gRa~ns~~vll~t~~~~~~~E~~ 537 (746)
T KOG0354 505 PIRMVQRRGR-GRARNSKCVLLTTGSEVIEFERN 537 (746)
T ss_pred HHHHHHHHCC-CCCCCCEEEEEECCHHHHHHHHH
T ss_conf 8899998631-01018769999725168899888
No 38
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.88 E-value=1e-19 Score=166.30 Aligned_cols=345 Identities=20% Similarity=0.226 Sum_probs=203.1
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCC-EEE
Q ss_conf 1888888438999999998873973379986337646999999999719978999316346899999999867898-389
Q gi|254780991|r 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN-AVE 223 (805)
Q Consensus 145 ~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n-~V~ 223 (805)
..++|..-|.+|++++....++ .+.-++.--||||||.+-+.+|++.++++|||||.+-|..|.+.++..+|+.+ .+.
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~-~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g 111 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRT-ERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIG 111 (442)
T ss_pred CCCCCHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 5788859999999999962225-786799967999889999999998269889997829999999999997348867660
Q ss_pred EEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCC-CEEEECCHHHHCCC--CCHH--HHHCCEEEEE
Q ss_conf 98621344442101555432102210358899999999999985499-84998277896168--9834--7722579994
Q gi|254780991|r 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGI--GSVE--SYSQMIVQLK 298 (805)
Q Consensus 224 ~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~-~~IVVgsrSAIfgl--~~P~--~~lglIIvdE 298 (805)
.+.+. . .+-+ ..|+|+|+..++.- ...+ ..-++||+||
T Consensus 112 ~~~~~------------------------------~-------~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE 154 (442)
T COG1061 112 IYGGG------------------------------E-------KELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDE 154 (442)
T ss_pred EECCC------------------------------C-------CCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 33687------------------------------2-------3357774899983897641555540356667599975
Q ss_pred CCCCCCHHH--HHHHHHHCCCCCCHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCC
Q ss_conf 198111787--532343117656338775453318724783-17888778887310444200222101666400111000
Q gi|254780991|r 299 IGDSVEQKE--LLSSLVKQQYKRQDIGIIRGTFRVCGDSIE-IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 (805)
Q Consensus 299 ehd~~~~~~--~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILd-satps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~ 375 (805)
.|....... +...+..++| +|| +|||--++ ...+....+.+..+.. .-....-..
T Consensus 155 ~Hh~~a~~~~~~~~~~~~~~~-----------------~LGLTATp~R~D-~~~~~~l~~~~g~~vy----~~~~~~li~ 212 (442)
T COG1061 155 VHHLPAPSYRRILELLSAAYP-----------------RLGLTATPERED-GGRIGDLFDLIGPIVY----EVSLKELID 212 (442)
T ss_pred CCCCCCHHHHHHHHHHHCCCE-----------------EEEEECCCCCCC-CCCHHHHHHHCCCEEE----ECCHHHHHH
T ss_conf 245784779999997510310-----------------467714872448-7752487740575567----335899833
Q ss_pred CCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCC
Q ss_conf 01000000002563678875455899899899887544332110012444477775332112014510113331144655
Q gi|254780991|r 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 (805)
Q Consensus 376 ~~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~g 455 (805)
...+-|...+....+......... .. ...+.. +.....+.
T Consensus 213 ~g~Lap~~~~~i~~~~t~~~~~~~----------~~------~~~~~~-------~~~~~~~~----------------- 252 (442)
T COG1061 213 EGYLAPYKYVEIKVTLTEDEEREY----------AK------ESARFR-------ELLRARGT----------------- 252 (442)
T ss_pred CCCCCCEEEEEEEECCCHHHHHHC----------CH------HHHHHH-------HHHHHHCC-----------------
T ss_conf 787577499998623662877740----------31------555555-------55543100-----------------
Q ss_pred CCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 56202330265442132101234475445432456541333235766554443222111010012155545444686754
Q gi|254780991|r 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535 (805)
Q Consensus 456 e~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~ 535 (805)
+.-. .+
T Consensus 253 ------------------------------~~~~--------------------------------------------~~ 258 (442)
T COG1061 253 ------------------------------LRAE--------------------------------------------NE 258 (442)
T ss_pred ------------------------------HHHH--------------------------------------------HH
T ss_conf ------------------------------1345--------------------------------------------67
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 20132200234320124467720000133101688999999863023212466214789999999986359668732576
Q gi|254780991|r 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 (805)
Q Consensus 536 e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~ 615 (805)
.... ..-....+..+...+.... ++.++++++-.+..+++++..|..-|+ +..+.+.
T Consensus 259 ~~~~---------------------~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~ 315 (442)
T COG1061 259 ARRI---------------------AIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGE 315 (442)
T ss_pred HHHH---------------------HHHHHHHHHHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHCCCCC-EEEEECC
T ss_conf 7777---------------------6642899999999987532-688669997577999999998626774-2466578
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-C-CCE--EEEEEC
Q ss_conf 457899999999731898699984587535787771179996288567444601377665431279-9-866--999824
Q gi|254780991|r 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-V-NSK--VILYAD 691 (805)
Q Consensus 616 ~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~-~-~G~--~il~ad 691 (805)
.++.+|.++++.|+.|.+++||.+.|+.+|+|+|+++.++++.. -.|...|+|++||.=|. . ++. ++.|..
T Consensus 316 t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~-----t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~ 390 (442)
T COG1061 316 TPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP-----TGSRRLFIQRLGRGLRPAEGKEDTLALDYSL 390 (442)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEECC-----CCCHHHHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf 99889999999987089529999614126657888757999779-----9879999999616634788999659999964
No 39
>KOG0342 consensus
Probab=99.87 E-value=5.6e-20 Score=168.19 Aligned_cols=127 Identities=20% Similarity=0.219 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCC
Q ss_conf 89999998630232124662147899999999863596687325764578999999997318986999845875357877
Q gi|254780991|r 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 (805)
Q Consensus 570 dl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p 649 (805)
.|+.-+++.... +++.||.-|-.++.-+++.|....+.+..+||..+|..|..+..+|++-+--|||.||++|||+|||
T Consensus 319 ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342 319 LLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred HHHHHHHHHCCC-CEEEEEECHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCEEEECCHHHCCCCCC
T ss_conf 999999973477-2499993302679999999850687532442578532202389988610664399603221368888
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 7117999628856744460137766543127-9986699982489889999999878
Q gi|254780991|r 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETT 705 (805)
Q Consensus 650 ~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~ 705 (805)
+|++|.-+| .|.+.+.||||+||||| |..|+++|+ ..+....+++...
T Consensus 398 ~V~~VvQ~~-----~P~d~~~YIHRvGRTaR~gk~G~alL~---l~p~El~Flr~LK 446 (543)
T KOG0342 398 DVDWVVQYD-----PPSDPEQYIHRVGRTAREGKEGKALLL---LAPWELGFLRYLK 446 (543)
T ss_pred CCEEEEEEC-----CCCCHHHHHHHHCCCCCCCCCCEEEEE---ECHHHHHHHHHHH
T ss_conf 840799858-----999989989873212236898638999---6766778999986
No 40
>KOG0336 consensus
Probab=99.87 E-value=2.6e-20 Score=170.67 Aligned_cols=130 Identities=20% Similarity=0.308 Sum_probs=118.2
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCC
Q ss_conf 99999863023212466214789999999986359668732576457899999999731898699984587535787771
Q gi|254780991|r 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 (805)
Q Consensus 572 ~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v 651 (805)
+....+.-..++++++|+..|-||++|+.-|.-.||....+|++..|..|+..|++|+.|++.|||+|+++.+|||+|.|
T Consensus 455 ~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~Di 534 (629)
T KOG0336 455 VQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDI 534 (629)
T ss_pred HHHHHHHCCCCCEEEEEEECHHHHHHCCCHHHHCCCCHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCHHC
T ss_conf 99999855888618999831032210231021146101102587224359999976415816999972234337882002
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 17999628856744460137766543127-99866999824898899999998788
Q gi|254780991|r 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTR 706 (805)
Q Consensus 652 ~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~r 706 (805)
|+|.||| ||++.+-|||++||+|| |+.|.+|.|....+-+|...+-++-.
T Consensus 535 THV~NyD-----FP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe 585 (629)
T KOG0336 535 THVYNYD-----FPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILE 585 (629)
T ss_pred CEEECCC-----CCCCHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHH
T ss_conf 0354057-----87559999987123565777763278886304777999999999
No 41
>KOG0347 consensus
Probab=99.86 E-value=6.4e-20 Score=167.76 Aligned_cols=106 Identities=21% Similarity=0.297 Sum_probs=101.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCC
Q ss_conf 12466214789999999986359668732576457899999999731898699984587535787771179996288567
Q gi|254780991|r 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 (805)
Q Consensus 584 R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~ 663 (805)
|++||+...--+-.|+-+|...+|..+-+|+.+.|.+|-+-|++|++..--|||+|+++|||||||+|.+|+.|.
T Consensus 465 rTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYq----- 539 (731)
T KOG0347 465 RTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQ----- 539 (731)
T ss_pred CEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCCCCEEEEEE-----
T ss_conf 359984118899999999741699971025778899998769987448881799623444258887863678960-----
Q ss_pred CCCCHHHHHHHHHHHCC-CCCCEEEEEECCCC
Q ss_conf 44460137766543127-99866999824898
Q gi|254780991|r 664 FLRSKTSLIQTIGRAAR-NVNSKVILYADTIT 694 (805)
Q Consensus 664 f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t 694 (805)
.|++.+-||||+|||+| |.+|..+|+.++.+
T Consensus 540 VPrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347 540 VPRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred CCCCCCEEEECCCCCCCCCCCCEEEEEECHHH
T ss_conf 68753246762665322567883799868177
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.86 E-value=2.2e-18 Score=156.16 Aligned_cols=125 Identities=26% Similarity=0.305 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC------CEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHH
Q ss_conf 88999999863023212466214789999999986359------668732576457899999999731898699984587
Q gi|254780991|r 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN------IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642 (805)
Q Consensus 569 ddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~------i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~ 642 (805)
..+...+...+..+..+||||.|.+++|.++..|.... ......||.+++.+|.++-+.|+.|+.+++|.|.-+
T Consensus 271 ~~~~~~l~~~i~~~~~tLvF~NtR~~aE~~~~~L~~~~~~~~~~~~i~~HHgSls~e~R~~vE~~lk~G~l~~vV~TsSL 350 (878)
T PRK13767 271 EALYETLDELIQEHRTTLIFTNTRSGAERVVYKLRKRYPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSL 350 (878)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECHH
T ss_conf 99999999999838977999155899999999999853430675432220177899999999999857998689982736
Q ss_pred HCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC--CCCCEEEEEECCCCHHHH
Q ss_conf 53578777117999628856744460137766543127--998669998248988999
Q gi|254780991|r 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQ 698 (805)
Q Consensus 643 akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR--~~~G~~il~ad~~t~~~~ 698 (805)
.-|+||+.|.+|+.++ .|++-.+|+||+||||. |...+.+++.......++
T Consensus 351 ELGIDiG~Vd~Viq~g-----sP~svarllQR~GRsGH~~g~~s~g~~vp~~~~ellE 403 (878)
T PRK13767 351 ELGIDIGYIDLVVLLG-----SPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVE 403 (878)
T ss_pred HCCCCCCCCCEEEECC-----CCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHH
T ss_conf 5077777525899758-----9611899999833578999980469999798168999
No 43
>KOG0334 consensus
Probab=99.85 E-value=4.9e-19 Score=161.15 Aligned_cols=127 Identities=18% Similarity=0.302 Sum_probs=113.0
Q ss_pred EECC-CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 0013-310168899999986302321246621478999999998635966873257645789999999973189869998
Q gi|254780991|r 560 EIRS-ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 (805)
Q Consensus 560 eir~-~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvg 638 (805)
+|++ -...+..|.+-+.++.. ...+++|+--+-.++.|.+-|...|+.+..+|+.+++..|..++.+|++|.+.+||+
T Consensus 591 ~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLva 669 (997)
T KOG0334 591 RVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVA 669 (997)
T ss_pred EEECCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9814836779999999998862-488799984714788999999856860543057875677885899974567428985
Q ss_pred HHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECC
Q ss_conf 458753578777117999628856744460137766543127-998669998248
Q gi|254780991|r 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADT 692 (805)
Q Consensus 639 t~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~ 692 (805)
|.++|+|||++++.||+||| |+..-+.|+|+.||||| |..|.+++|.+.
T Consensus 670 TsvvarGLdv~~l~Lvvnyd-----~pnh~edyvhR~gRTgragrkg~AvtFi~p 719 (997)
T KOG0334 670 TSVVARGLDVKELILVVNYD-----FPNHYEDYVHRVGRTGRAGRKGAAVTFITP 719 (997)
T ss_pred HHHHHCCCCCCCEEEEEECC-----CCHHHHHHHHHHCCCCCCCCCCEEEEEECH
T ss_conf 14542676665405899736-----631279999985135667776337998577
No 44
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.5e-17 Score=149.96 Aligned_cols=323 Identities=18% Similarity=0.200 Sum_probs=213.3
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 18888884389999999988739733799863376469999999997-19978999316346899999999867898389
Q gi|254780991|r 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223 (805)
Q Consensus 145 ~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~-~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~ 223 (805)
+.|-| .|.++|..+.+| +.++..==||+||...|- +-+- ..-.+||++|=|+|-.-.++.++.. | -.++
T Consensus 16 ~~FR~--gQ~evI~~~l~g-----~d~lvvmPTGgGKSlCyQ-iPAll~~G~TLVVSPLiSLM~DQV~~l~~~-G-i~A~ 85 (590)
T COG0514 16 ASFRP--GQQEIIDALLSG-----KDTLVVMPTGGGKSLCYQ-IPALLLEGLTLVVSPLISLMKDQVDQLEAA-G-IRAA 85 (590)
T ss_pred CCCCC--CHHHHHHHHHCC-----CCEEEECCCCCCCCHHHH-HHHHHCCCCEEEECCHHHHHHHHHHHHHHC-C-CEEE
T ss_conf 30388--889999999658-----867998538987106743-678865997899785688899999999975-9-6520
Q ss_pred EEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCH-------HHHHCCEEE
Q ss_conf 9862134444210155543210221035889999999999998549984998277896168983-------477225799
Q gi|254780991|r 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV-------ESYSQMIVQ 296 (805)
Q Consensus 224 ~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P-------~~~lglIIv 296 (805)
+..|-++ ..+|...|..+..|+-.++--|---+- .| .-.++++++
T Consensus 86 ~lnS~l~-------------------------~~e~~~v~~~l~~g~~klLyisPErl~---~~~f~~~L~~~~i~l~vI 137 (590)
T COG0514 86 YLNSTLS-------------------------REERQQVLNQLKSGQLKLLYISPERLM---SPRFLELLKRLPISLVAI 137 (590)
T ss_pred HHHCCCC-------------------------HHHHHHHHHHHHCCCEEEEEECCHHHC---CHHHHHHHHHCCCCEEEE
T ss_conf 4424367-------------------------877999999986496459998813631---768999997088756996
Q ss_pred EECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCC
Q ss_conf 94198111787532343117656338775453318724783178887788873104442002221016664001110000
Q gi|254780991|r 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 (805)
Q Consensus 297 dEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~ 376 (805)
||-|=-|.+-.-++.. |.+ ....+..|...+.+-=.||++-...
T Consensus 138 DEAHCiSqWGhdFRP~----Y~~--lg~l~~~~~~~p~~AlTATA~~~v~------------------------------ 181 (590)
T COG0514 138 DEAHCISQWGHDFRPD----YRR--LGRLRAGLPNPPVLALTATATPRVR------------------------------ 181 (590)
T ss_pred CHHHHHHHCCCCCCHH----HHH--HHHHHHHCCCCCEEEEECCCCHHHH------------------------------
T ss_conf 2177776417743776----899--9999851799977997378986789------------------------------
Q ss_pred CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 10000000025636788754558998998998875443321100124444777753321120145101133311446555
Q gi|254780991|r 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456 (805)
Q Consensus 377 ~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge 456 (805)
.+...++. +..+..+.. .-.
T Consensus 182 ------------------------~DI~~~L~---------------------------------l~~~~~~~~---sfd 201 (590)
T COG0514 182 ------------------------DDIREQLG---------------------------------LQDANIFRG---SFD 201 (590)
T ss_pred ------------------------HHHHHHHC---------------------------------CCCCCEEEE---CCC
T ss_conf ------------------------99999846---------------------------------788664871---589
Q ss_pred CCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 62023302654421321012344754454324565413332357665544432221110100121555454446867542
Q gi|254780991|r 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536 (805)
Q Consensus 457 ~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e 536 (805)
+|+..+.
T Consensus 202 RpNi~~~------------------------------------------------------------------------- 208 (590)
T COG0514 202 RPNLALK------------------------------------------------------------------------- 208 (590)
T ss_pred CCHHHHH-------------------------------------------------------------------------
T ss_conf 8523455-------------------------------------------------------------------------
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHH-HHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 01322002343201244677200001331016889999998-63023212466214789999999986359668732576
Q gi|254780991|r 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL-AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 (805)
Q Consensus 537 ~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~-~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~ 615 (805)
+++.....+++. -|.. .-..+....+.+.|++.+|++++.|...|+.+...|++
T Consensus 209 ------------------------v~~~~~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaG 263 (590)
T COG0514 209 ------------------------VVEKGEPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAG 263 (590)
T ss_pred ------------------------HHHCCCHHHHHH-HHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf ------------------------642564788899-9874132468972899933775999999999779725775189
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCC
Q ss_conf 45789999999973189869998458753578777117999628856744460137766543127-99866999824898
Q gi|254780991|r 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTIT 694 (805)
Q Consensus 616 ~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t 694 (805)
+...+|+.+-+.|..++++|+|+|.-...|+|-|+|-+|+.+| .|+|.++|+|-+||||| |....+||+...-+
T Consensus 264 l~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~-----lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 264 LSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYD-----LPGSIESYYQETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEC-----CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf 8899999999997169986899964624776788840799806-----99898999999713567877021788606300
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999987
Q gi|254780991|r 695 KSIQLAIDET 704 (805)
Q Consensus 695 ~~~~~ai~e~ 704 (805)
....+.+.+.
T Consensus 339 ~~~~~~~i~~ 348 (590)
T COG0514 339 IRWQRYLIEQ 348 (590)
T ss_pred HHHHHHHHHH
T ss_conf 7999999985
No 45
>KOG0345 consensus
Probab=99.83 E-value=8.2e-18 Score=151.95 Aligned_cols=114 Identities=18% Similarity=0.267 Sum_probs=91.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHC--CCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCC
Q ss_conf 21246621478999999998635--9668732576457899999999731898699984587535787771179996288
Q gi|254780991|r 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 (805)
Q Consensus 583 ~R~l~~~~tkr~~e~l~~~~~~~--~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD 660 (805)
.+.+||-.|=..++.....|+.. .+....+||.+++.+|.+++..|++-.--+|..||++|+|||||+|.+|+-+|
T Consensus 256 kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~D-- 333 (567)
T KOG0345 256 KKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFD-- 333 (567)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCHHCCHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCEEEEECC--
T ss_conf 627999347540999998888760787479862201234688999998715686188604555368988970799707--
Q ss_pred CCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHH
Q ss_conf 56744460137766543127-998669998248988999999
Q gi|254780991|r 661 KEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAI 701 (805)
Q Consensus 661 ~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai 701 (805)
-|.+..+++||+||||| |+.|++|+|...........+
T Consensus 334 ---pP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345 334 ---PPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred ---CCCCHHHHHHHCCHHHHCCCCCCEEEEECCCHHHHHHHH
T ss_conf ---999814777741214435676634899766178889999
No 46
>KOG0348 consensus
Probab=99.83 E-value=1e-18 Score=158.77 Aligned_cols=93 Identities=22% Similarity=0.399 Sum_probs=80.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCC
Q ss_conf 966873257645789999999973189869998458753578777117999628856744460137766543127-9986
Q gi|254780991|r 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNS 684 (805)
Q Consensus 606 ~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G 684 (805)
+.+..-+||.+.|.+|..+++.|+..+--||..||++|||||+|+|++|+-||| |.+...|+||+|||+| |.+|
T Consensus 471 ~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~-----P~s~adylHRvGRTARaG~kG 545 (708)
T KOG0348 471 DLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDP-----PFSTADYLHRVGRTARAGEKG 545 (708)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCCEEEEECC-----CCCHHHHHHHHHHHHHCCCCC
T ss_conf 463788427434889999987530354427885034542688877676998279-----998899999840454346777
Q ss_pred EEEEEECCCCHHHHHHHHHHHH
Q ss_conf 6999824898899999998788
Q gi|254780991|r 685 KVILYADTITKSIQLAIDETTR 706 (805)
Q Consensus 685 ~~il~ad~~t~~~~~ai~e~~r 706 (805)
.++||-- ++....+.....
T Consensus 546 ~alLfL~---P~Eaey~~~l~~ 564 (708)
T KOG0348 546 EALLFLL---PSEAEYVNYLKK 564 (708)
T ss_pred CEEEEEC---CCHHHHHHHHHH
T ss_conf 1578866---517999998875
No 47
>KOG0341 consensus
Probab=99.82 E-value=1.1e-19 Score=165.99 Aligned_cols=105 Identities=25% Similarity=0.386 Sum_probs=97.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCC
Q ss_conf 24662147899999999863596687325764578999999997318986999845875357877711799962885674
Q gi|254780991|r 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 (805)
Q Consensus 585 ~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f 664 (805)
+|+|+--|..++++++||--.|+.+..+|+..+|.+|...+..||.|+-||||+|++++||||||++.+|+||| .
T Consensus 424 VLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyD-----M 498 (610)
T KOG0341 424 VLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYD-----M 498 (610)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCHHHCCCC-----C
T ss_conf 69984145674789999987251368741686566788899998657874588731000368974504440478-----8
Q ss_pred CCCHHHHHHHHHHHCC-CCCCEEEEEECCCC
Q ss_conf 4460137766543127-99866999824898
Q gi|254780991|r 665 LRSKTSLIQTIGRAAR-NVNSKVILYADTIT 694 (805)
Q Consensus 665 ~~~~~~~~q~~GRagR-~~~G~~il~ad~~t 694 (805)
|...+.|+|+|||||| |..|-+-+|.+..+
T Consensus 499 P~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341 499 PEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
T ss_conf 0889999997124677888640222114563
No 48
>KOG0350 consensus
Probab=99.81 E-value=1.9e-18 Score=156.74 Aligned_cols=111 Identities=22% Similarity=0.288 Sum_probs=95.6
Q ss_pred HCCCCCCCCCHHHHHHHHHHH----HHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEE
Q ss_conf 023212466214789999999----9863596687325764578999999997318986999845875357877711799
Q gi|254780991|r 580 QQGLRILLTVLTKRMAEDLTE----YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655 (805)
Q Consensus 580 ~~~~R~l~~~~tkr~~e~l~~----~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~ 655 (805)
.+..|++.|+...-.+..|+. .|....+.+.+..|...+..|.+++++|+.|++.+||.+|.+|||+|+-+|+-|+
T Consensus 427 ~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VI 506 (620)
T KOG0350 427 NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVI 506 (620)
T ss_pred HHCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCEEE
T ss_conf 40104899952468899999999998626440255652344388999999987538952998523655477602460476
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCH
Q ss_conf 9628856744460137766543127-998669998248988
Q gi|254780991|r 656 ILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITK 695 (805)
Q Consensus 656 i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~ 695 (805)
||| .|.+.++||||+||||| |..|.++...+.-+.
T Consensus 507 NYd-----~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350 507 NYD-----PPASDKTYVHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred ECC-----CCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
T ss_conf 358-----981265787760221005677447896315540
No 49
>KOG0339 consensus
Probab=99.81 E-value=4e-18 Score=154.28 Aligned_cols=104 Identities=26% Similarity=0.395 Sum_probs=99.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCC
Q ss_conf 12466214789999999986359668732576457899999999731898699984587535787771179996288567
Q gi|254780991|r 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 (805)
Q Consensus 584 R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~ 663 (805)
.+|+++.-|-.+|++...|.-.++.+..+|++++|.+|.++|.+|+++...|||+|+++++|||||.+.-|+++|
T Consensus 470 kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD----- 544 (731)
T KOG0339 470 KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYD----- 544 (731)
T ss_pred CEEEEEECCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCEEECCC-----
T ss_conf 479999422789999987320563256522745667777799987624775488840765178752201023432-----
Q ss_pred CCCCHHHHHHHHHHHCC-CCCCEEEEEECC
Q ss_conf 44460137766543127-998669998248
Q gi|254780991|r 664 FLRSKTSLIQTIGRAAR-NVNSKVILYADT 692 (805)
Q Consensus 664 f~~~~~~~~q~~GRagR-~~~G~~il~ad~ 692 (805)
|-++.+.++|+|||+|| |.+|.++++.+.
T Consensus 545 ~ardIdththrigrtgRag~kGvayTlvTe 574 (731)
T KOG0339 545 FARDIDTHTHRIGRTGRAGEKGVAYTLVTE 574 (731)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEEECH
T ss_conf 221067788775102335556513687335
No 50
>KOG0327 consensus
Probab=99.81 E-value=7.7e-20 Score=167.12 Aligned_cols=116 Identities=26% Similarity=0.425 Sum_probs=104.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf 21246621478999999998635966873257645789999999973189869998458753578777117999628856
Q gi|254780991|r 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 (805)
Q Consensus 583 ~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~ 662 (805)
...++|..|++.+..|+..|...+..+..+|+++.+.+|.-+++.|+.|...|||.|+++|+|+|+-+|+||++||
T Consensus 264 ~q~~if~nt~r~v~~l~~~L~~~~~~~s~i~~d~~q~~R~~~~~~f~~g~srvlIttdl~argidv~~~slvinyd---- 339 (397)
T KOG0327 264 TQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYD---- 339 (397)
T ss_pred HCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCEEEEEC----
T ss_conf 3105785104567778999862773378763464300346899986458723774122124654111012256501----
Q ss_pred CCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 744460137766543127-99866999824898899999998788
Q gi|254780991|r 663 GFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTR 706 (805)
Q Consensus 663 ~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~r 706 (805)
.|+.-++|+|++||+|| |++|.+|.+. +....+.+.++++
T Consensus 340 -lP~r~~~yihR~gr~gr~grkg~~in~v---~~~d~~~lk~ie~ 380 (397)
T KOG0327 340 -LPARKENYIHRIGRAGRFGRKGVAINFV---TEEDVRDLKDIEK 380 (397)
T ss_pred -CCCCHHHHHHHCCCCCCCCCCCEEEEEE---HHHHHHHHHHHHH
T ss_conf -6520666665255456567771355520---1756888873898
No 51
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.79 E-value=3.3e-17 Score=147.47 Aligned_cols=123 Identities=25% Similarity=0.292 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC-CEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHC
Q ss_conf 01688999999863023212466214789999999986359-66873257645789999999973189869998458753
Q gi|254780991|r 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN-IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 (805)
Q Consensus 566 ~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~-i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~ak 644 (805)
.....++..|...+.+..-+||||.|..++|.|+..|...+ ......||.++..+|.++-++|++|+.+++|.|-=+..
T Consensus 237 ~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLEL 316 (814)
T COG1201 237 ELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLEL 316 (814)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 24678999999999616858999727278999999998726875565316665778999999986688629998064220
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC--CCCCEEEEEECCC
Q ss_conf 578777117999628856744460137766543127--9986699982489
Q gi|254780991|r 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTI 693 (805)
Q Consensus 645 GlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR--~~~G~~il~ad~~ 693 (805)
|+|+..|.||+.+.+ |++-..++||+||+|+ +..-+.++++...
T Consensus 317 GIDiG~vdlVIq~~S-----P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r 362 (814)
T COG1201 317 GIDIGDIDLVIQLGS-----PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR 362 (814)
T ss_pred CCCCCCCEEEEEECC-----CHHHHHHHHHCCCCCCCCCCCCCEEEEECCH
T ss_conf 502477429998179-----3888888685031466568864279981679
No 52
>KOG4284 consensus
Probab=99.79 E-value=2.7e-18 Score=155.51 Aligned_cols=105 Identities=21% Similarity=0.346 Sum_probs=98.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf 21246621478999999998635966873257645789999999973189869998458753578777117999628856
Q gi|254780991|r 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662 (805)
Q Consensus 583 ~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~ 662 (805)
+..|||+-..-.++-++.+|..-|+.+..+.|.+.|.+|...+.++|.-.+.|||.|++-|||+|-|+|.||+|+|+
T Consensus 273 ~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~--- 349 (980)
T KOG4284 273 VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDA--- 349 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCEEEEEEECCHHHCCCCCCCCCEEEECCC---
T ss_conf 77776541342104788775116987177414112357889998742016899985231222678655536983587---
Q ss_pred CCCCCHHHHHHHHHHHCC-CCCCEEEEEECC
Q ss_conf 744460137766543127-998669998248
Q gi|254780991|r 663 GFLRSKTSLIQTIGRAAR-NVNSKVILYADT 692 (805)
Q Consensus 663 ~f~~~~~~~~q~~GRagR-~~~G~~il~ad~ 692 (805)
|.++++|.|||||||| |..|-+|+|.-.
T Consensus 350 --p~d~eTY~HRIGRAgRFG~~G~aVT~~~~ 378 (980)
T KOG4284 350 --PADEETYFHRIGRAGRFGAHGAAVTLLED 378 (980)
T ss_pred --CCCHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf --73067899884000014556506888606
No 53
>PRK02362 ski2-like helicase; Provisional
Probab=99.77 E-value=1.3e-15 Score=135.57 Aligned_cols=88 Identities=23% Similarity=0.318 Sum_probs=69.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCC----CCCCC-CCHHHHHHHHHHHCC
Q ss_conf 9668732576457899999999731898699984587535787771179996288----56744-460137766543127
Q gi|254780991|r 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD----KEGFL-RSKTSLIQTIGRAAR 680 (805)
Q Consensus 606 ~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD----~~~f~-~~~~~~~q~~GRagR 680 (805)
...+.+.|+++...+|.-|-+.|++|.+.||++|--+|-|+.+|- ..|+|-+-- ..|+. =+...|.|.+|||||
T Consensus 303 ~~GVafHHAGL~~~~R~lVE~~Fr~g~Ikvl~aTsTLA~GVNLPA-r~VIi~~~~~~~~~~g~~~l~~~e~~QM~GRAGR 381 (736)
T PRK02362 303 RSGAAFHHAGLSREHRELVEEGFRDGLIKVISSTPTLAAGLNLPA-RRVIIRDYRRYDSGAGMQPIPVLEYHQMAGRAGR 381 (736)
T ss_pred HCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCE-EEEEEECCEEECCCCCCEECCHHHHHHHHHHCCC
T ss_conf 609485159999899999999998799838972516650557852-6999804367369888336889999999852489
Q ss_pred -CCC--CEEEEEECCCC
Q ss_conf -998--66999824898
Q gi|254780991|r 681 -NVN--SKVILYADTIT 694 (805)
Q Consensus 681 -~~~--G~~il~ad~~t 694 (805)
|.+ |.+|+.+...+
T Consensus 382 pg~D~~G~aili~~~~~ 398 (736)
T PRK02362 382 PRLDPYGEAVLLAKSYD 398 (736)
T ss_pred CCCCCCCEEEEEECCHH
T ss_conf 98898862999967827
No 54
>KOG0332 consensus
Probab=99.74 E-value=1.9e-17 Score=149.15 Aligned_cols=120 Identities=24% Similarity=0.285 Sum_probs=104.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCC-CC
Q ss_conf 12466214789999999986359668732576457899999999731898699984587535787771179996288-56
Q gi|254780991|r 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD-KE 662 (805)
Q Consensus 584 R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD-~~ 662 (805)
...+|+-||+.|..|++.+...|..+..+||++...+|..|+.+||.|...|||.||++|||+|++.|++|+|||.- +.
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~ 411 (477)
T KOG0332 332 QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKY 411 (477)
T ss_pred HEEEEEEEHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCEEEEEEECCCCCCC
T ss_conf 05899962026999999998437536785065306788999999865760699870111235653137999944776455
Q ss_pred CCCCCHHHHHHHHHHHCC-CCCCEEEEEECC-CCHHHHHHHHH
Q ss_conf 744460137766543127-998669998248-98899999998
Q gi|254780991|r 663 GFLRSKTSLIQTIGRAAR-NVNSKVILYADT-ITKSIQLAIDE 703 (805)
Q Consensus 663 ~f~~~~~~~~q~~GRagR-~~~G~~il~ad~-~t~~~~~ai~e 703 (805)
+-..+.++|+|||||||| |+.|.+|-+.|. -+..+..+|.+
T Consensus 412 ~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~ 454 (477)
T KOG0332 412 TGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQK 454 (477)
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 7898778898870234656655248986416575899999999
No 55
>PRK01172 ski2-like helicase; Provisional
Probab=99.74 E-value=6.6e-15 Score=130.20 Aligned_cols=87 Identities=26% Similarity=0.348 Sum_probs=69.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC---CCCCC-CHHHHHHHHHHHCC-C
Q ss_conf 6687325764578999999997318986999845875357877711799962885---67444-60137766543127-9
Q gi|254780991|r 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK---EGFLR-SKTSLIQTIGRAAR-N 681 (805)
Q Consensus 607 i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~---~~f~~-~~~~~~q~~GRagR-~ 681 (805)
..+.+.|+++...+|.-|-+.|++|.+.||++|.-+|-|+++|- ..|+|-+-.+ .++.. +...|.|.+||||| |
T Consensus 286 ~GVafHHaGL~~~eR~lVE~~f~~g~i~vl~aT~TLAaGVNlPA-r~VIi~~~~r~~~~~~~~l~~~e~~QM~GRAGR~g 364 (674)
T PRK01172 286 HGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCE-EEEEEEEEEEECCCCEEECCHHHHHHHCCCCCCCC
T ss_conf 28283068999899999999998699649971446765447860-59999300781799715777898998613589999
Q ss_pred C--CCEEEEEECCCC
Q ss_conf 9--866999824898
Q gi|254780991|r 682 V--NSKVILYADTIT 694 (805)
Q Consensus 682 ~--~G~~il~ad~~t 694 (805)
- .|.+|+.+....
T Consensus 365 ~D~~G~~ii~~~~~~ 379 (674)
T PRK01172 365 YDQYGIGYIYAASPA 379 (674)
T ss_pred CCCCCCEEEEECCCH
T ss_conf 998870899972822
No 56
>KOG0343 consensus
Probab=99.71 E-value=4e-16 Score=139.28 Aligned_cols=128 Identities=20% Similarity=0.263 Sum_probs=106.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC--CCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHH
Q ss_conf 3310168899999986302321246621478999999998635--96687325764578999999997318986999845
Q gi|254780991|r 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 (805)
Q Consensus 563 ~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~--~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~ 640 (805)
+.+..++-|..-|..- ...+.+||.-|.+-+.-+++.|... |+..+.+||.+.|..|.++..+|-....-||..|+
T Consensus 296 ~l~~Ki~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TD 373 (758)
T KOG0343 296 PLEDKIDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTD 373 (758)
T ss_pred EHHHHHHHHHHHHHHC--CCCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEH
T ss_conf 6014789999999845--25436999860068999999998508998325421631377889999999875555898602
Q ss_pred HHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHH
Q ss_conf 8753578777117999628856744460137766543127-99866999824898899999
Q gi|254780991|r 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLA 700 (805)
Q Consensus 641 ~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~a 700 (805)
+++||||||-|..|+-+| -|.+..+||||+||++| +..|.++++. +++.+.+
T Consensus 374 v~aRGLDFpaVdwViQ~D-----CPedv~tYIHRvGRtAR~~~~G~sll~L---~psEeE~ 426 (758)
T KOG0343 374 VAARGLDFPAVDWVIQVD-----CPEDVDTYIHRVGRTARYKERGESLLML---TPSEEEA 426 (758)
T ss_pred HHHCCCCCCCCCEEEEEC-----CCHHHHHHHHHHHHHHCCCCCCCEEEEE---CCHHHHH
T ss_conf 554368986433699806-----8205889998721221136778568997---6316999
No 57
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.71 E-value=9e-17 Score=144.16 Aligned_cols=119 Identities=29% Similarity=0.511 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCC
Q ss_conf 01688999999863023212466214789999999986359668732576457899999999731898699984587535
Q gi|254780991|r 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645 (805)
Q Consensus 566 ~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akG 645 (805)
..++.|++-|.+....+.+++||+.++.+.+.|.++|...++.+..+|++.+..+|.+++++|++|+++|||+|++++.|
T Consensus 12 ~K~~~l~~~i~~~~~~~~kviIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~R~~~~~~F~~~~~~ilv~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEEECCEEC
T ss_conf 99999999999999789909999788999999999995589989999899999999999999775401048875112003
Q ss_pred CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEE
Q ss_conf 78777117999628856744460137766543127-998669998
Q gi|254780991|r 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILY 689 (805)
Q Consensus 646 lD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ 689 (805)
+|+|++++|+++| .+-|...|+|++||+|| |..|.||++
T Consensus 92 ldl~~~~~vI~~~-----~~~s~~~~~Q~~GR~~R~gq~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYD-----LPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCCCCCCEEEEEC-----CCCCHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 6610287999978-----996989999897216708996379979
No 58
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.70 E-value=7.9e-15 Score=129.62 Aligned_cols=114 Identities=23% Similarity=0.254 Sum_probs=94.7
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHH----HHHHHCC----CEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHH
Q ss_conf 9999986302321246621478999999----9986359----6687325764578999999997318986999845875
Q gi|254780991|r 572 YDEINLAAQQGLRILLTVLTKRMAEDLT----EYLYERN----IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643 (805)
Q Consensus 572 ~~ei~~~~~~~~R~l~~~~tkr~~e~l~----~~~~~~~----i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~a 643 (805)
-.-+......+.++++|+.+.+++|.+. ..+...+ ..+.-.+++....+|.+|..+|+.|++.+++.|+.+.
T Consensus 296 ~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Ale 375 (851)
T COG1205 296 ATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALE 375 (851)
T ss_pred HHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHEEECCCCCCHHHHHHHHHHHHCCCCCEEEECHHHC
T ss_conf 99999998769659999835756788754157887540601033134233669999999999997468841786121012
Q ss_pred CCCCCCCCCEEEEECCCCCCCCC-CHHHHHHHHHHHCC-CCCCEEEEEE
Q ss_conf 35787771179996288567444-60137766543127-9986699982
Q gi|254780991|r 644 EGLDIPECGLVAILDADKEGFLR-SKTSLIQTIGRAAR-NVNSKVILYA 690 (805)
Q Consensus 644 kGlD~p~v~lV~i~dAD~~~f~~-~~~~~~q~~GRagR-~~~G~~il~a 690 (805)
=|+||..+.-|++.- +|. +.-++.|++||||| +..+-++.-+
T Consensus 376 lgidiG~ldavi~~g-----~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~ 419 (851)
T COG1205 376 LGIDIGSLDAVIAYG-----YPGVSVLSFRQRAGRAGRRGQESLVLVVL 419 (851)
T ss_pred CCEEECCEEEEEECC-----CCCCHHHHHHHHHCCCCCCCCCCEEEEEE
T ss_conf 265670211453048-----89702888988611035887875379983
No 59
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.68 E-value=1.6e-13 Score=119.81 Aligned_cols=84 Identities=26% Similarity=0.397 Sum_probs=66.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCC----C-CCCHHHHHHHHHHHCC-C
Q ss_conf 68732576457899999999731898699984587535787771179996288567----4-4460137766543127-9
Q gi|254780991|r 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG----F-LRSKTSLIQTIGRAAR-N 681 (805)
Q Consensus 608 ~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~----f-~~~~~~~~q~~GRagR-~ 681 (805)
.+...|..+....|.-+=..||.|.+.|||.|--+|.|...|- ..|+|-|....+ + +-+.-.+.|.+||||| |
T Consensus 316 GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA-~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg 394 (766)
T COG1204 316 GVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPA-RTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPG 394 (766)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCCC-EEEEEEEEEEECCCCCEEECCHHHHHHCCCCCCCCC
T ss_conf 7541126897889999999986698549995457762168863-289991038775778847776414865567679987
Q ss_pred CC--CEEEEEECC
Q ss_conf 98--669998248
Q gi|254780991|r 682 VN--SKVILYADT 692 (805)
Q Consensus 682 ~~--G~~il~ad~ 692 (805)
-+ |.+++.++.
T Consensus 395 ~d~~G~~~i~~~~ 407 (766)
T COG1204 395 YDDYGEAIILATS 407 (766)
T ss_pred CCCCCCEEEEECC
T ss_conf 5777827999358
No 60
>PRK00254 ski2-like helicase; Provisional
Probab=99.68 E-value=1e-13 Score=121.36 Aligned_cols=86 Identities=26% Similarity=0.366 Sum_probs=68.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC---CCCC-CCHHHHHHHHHHHCC-CC
Q ss_conf 687325764578999999997318986999845875357877711799962885---6744-460137766543127-99
Q gi|254780991|r 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK---EGFL-RSKTSLIQTIGRAAR-NV 682 (805)
Q Consensus 608 ~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~---~~f~-~~~~~~~q~~GRagR-~~ 682 (805)
.+.+.|+++...+|.-|-..|++|.+.||++|--+|-|+++|-- .|+|-+-.. .|+. =+...|.|.+||||| |.
T Consensus 296 GVafHHAGL~~~~R~lVE~~Fr~g~Ikvl~aTsTLA~GVNLPAr-~VIi~~~~~~~~~g~~~i~~~e~~QM~GRAGR~G~ 374 (717)
T PRK00254 296 GVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAF-RVIIRDTWRYSEFGMERIPVLEIQQMMGRAGRPKY 374 (717)
T ss_pred CHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCE-EEEEECCEEECCCCCEECCHHHHHHHHHHCCCCCC
T ss_conf 83121589998899999999987995899816446504577605-99992656707997237875368886250699987
Q ss_pred C--CEEEEEECCCC
Q ss_conf 8--66999824898
Q gi|254780991|r 683 N--SKVILYADTIT 694 (805)
Q Consensus 683 ~--G~~il~ad~~t 694 (805)
+ |.+|+.+...+
T Consensus 375 D~~G~~iii~~~~~ 388 (717)
T PRK00254 375 DEVGEAIIVSTTED 388 (717)
T ss_pred CCCCEEEEEECCCC
T ss_conf 88850899954857
No 61
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.67 E-value=1.5e-14 Score=127.48 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=95.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCC
Q ss_conf 12466214789999999986359668732576457899999999731898699984587535787771179996288567
Q gi|254780991|r 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 (805)
Q Consensus 584 R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~ 663 (805)
.++|||...|.+.+|+.+|...|+++.-.|+.+...+|..+-.+|.+++++++|.|--++-|.|||--..+.---|=--
T Consensus 442 QtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~- 520 (830)
T COG1202 442 QTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGI- 520 (830)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCHHHHHHHHHHCCC-
T ss_conf 3699942166699999886107866654437986788888999976087555764245644788751899999987104-
Q ss_pred CCCCHHHHHHHHHHHCC-CC--CCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 44460137766543127-99--8669998248988999999987888
Q gi|254780991|r 664 FLRSKTSLIQTIGRAAR-NV--NSKVILYADTITKSIQLAIDETTRR 707 (805)
Q Consensus 664 f~~~~~~~~q~~GRagR-~~--~G~~il~ad~~t~~~~~ai~e~~rr 707 (805)
-+-|.+-+-|..||||| +- .|+|++.+. +..+....+.+|+..
T Consensus 521 ~WLs~~EF~QM~GRAGRp~yHdrGkVyllve-pg~~Y~~~m~~TEde 566 (830)
T COG1202 521 EWLSVREFQQMLGRAGRPDYHDRGKVYLLVE-PGKKYHASMEETEDE 566 (830)
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCEEEEEEC-CCHHHCCCCCCCHHH
T ss_conf 3278999999850469987233733999955-770111121351899
No 62
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=99.67 E-value=1.8e-17 Score=149.39 Aligned_cols=431 Identities=18% Similarity=0.200 Sum_probs=247.3
Q ss_pred HHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHH----HHHCCCCCCHHHHHCCC-CCCCCHHHHCCCCCCHHHHH--
Q ss_conf 431176563387754533187247831788877888----73104442002221016-66400111000010000000--
Q gi|254780991|r 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA----WRVSMFGNDIEEISEFY-PLTGQKIRNVETIKIYANSH-- 384 (805)
Q Consensus 312 l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~----~Rie~f~deIe~I~~fD-plT~~~~~~~~~~~i~Pa~~-- 384 (805)
|+.+||+|.|.+..+|+|++||+|||||||+.+. | +|++||||+||+|+.|| +.+|++++.+....+.|+++
T Consensus 1 L~~~GY~r~~~V~~~GEFs~RG~I~DIfp~~~~~-PntqavRi~ff~D~iesIr~FdP~~~q~~~~~l~~~~l~Pa~e~~ 79 (997)
T TIGR00580 1 LVELGYERVDLVEEEGEFSVRGDILDIFPPGSEA-PNTQAVRIEFFGDEIESIREFDPVSDQRSLEELSEITLLPAKELE 79 (997)
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCEEECCCCCCC-CCCCEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 9743211255201034335515000211577888-874368997217857660024881334346423420025301000
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHC
Q ss_conf 02563678875455899899899887544332110012444477775332112014510113331144655562023302
Q gi|254780991|r 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464 (805)
Q Consensus 385 ~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY 464 (805)
.+...+........... . .............-|.-.....++...+.--..|++.+-+.+. .+.+++|+||
T Consensus 80 i~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~L~~~~~e~l~~~~~g~~~~G~e~~lPl~~----~~G~~~L~D~ 150 (997)
T TIGR00580 80 ILLEEETRARAKQNAAR--V---EDAEKTETDKAKEILAVKILEELEALKEGKKKAGLEKFLPLFF----EDGLSSLVDY 150 (997)
T ss_pred CCCCHHHHHHHHHHHHH--H---CCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHCCCCE----ECCCCCCCCC
T ss_conf 36566666668778875--1---0035766411354543035235788872577442455525020----0788641102
Q ss_pred CCCCCE----EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC--------CC
Q ss_conf 654421----321012344754454324565413332357665544432221110100121555454446--------86
Q gi|254780991|r 465 IPEDSL----LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA--------TP 532 (805)
Q Consensus 465 ~p~d~l----l~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~sa--------tP 532 (805)
++++.. |++++.....+....+.+.-. .+....|.-....++-..+|--....-++.+.... ++
T Consensus 151 ~~~~t~~~P~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ehfl~~~~~~~~~l~~~~~veld~~k~~ 226 (997)
T TIGR00580 151 LPDNTPEAPVILLDEPERFHEAAEELQRELE----EFYEALEEAKKLINPPSEHFLARLDLSFEELVLEVLVELDRLKTE 226 (997)
T ss_pred CCCCCCCCCEEEECCHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 3354789888996175565489999999999----999877765306787213110116773555555553223123111
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCE---------ECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7542013220023432012446772000---------0133101688999999863023212466214789999999986
Q gi|254780991|r 533 GSWELEQCQGIIVEQIIRPTGLVDPPVE---------IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603 (805)
Q Consensus 533 g~~e~e~~~~~~~eqi~rptg~idp~ie---------ir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~ 603 (805)
. ...-..++-.+...+..... -+....-+.....++-.....|..+.+...++..++.+...|.
T Consensus 227 ~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~ll~ 299 (997)
T TIGR00580 227 H-------KAISLSEVQLESAILSLKASEAIELAQKHSRLEFGEILAFKEELFRWLKAGFKVVLLAESESQAERLKSLLK 299 (997)
T ss_pred H-------HCCCHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 0-------003312332033555755034466304631024555789999999998749818999637632689999996
Q ss_pred HCCCEEEECCCCCC--HHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCC----CCHHHHHHHHH-
Q ss_conf 35966873257645--789999999973189869998458753578777117999628856744----46013776654-
Q gi|254780991|r 604 ERNIRVRYMHSEVK--TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL----RSKTSLIQTIG- 676 (805)
Q Consensus 604 ~~~i~~~~~h~~~~--~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~----~~~~~~~q~~G- 676 (805)
+..+.+.-..--.+ ...- ..-...+...++ -|--+..|.++|.-.||+|.+-|.=+=+ +..+.+.....
T Consensus 300 ~~d~~~~~~~~p~~yP~~~~---~~~~~~~~~~~~-~g~~~~~gf~~~~~~la~i~~~elf~~r~~~~~~~~~~~~~~~~ 375 (997)
T TIGR00580 300 EYDIAAKVIVEPLEYPALDS---SQLLIPAVVYVL-EGGELSSGFILPTAGLAVITESELFGSRVKRRPKKKRKKSKLTS 375 (997)
T ss_pred HCCCCCCCCCCHHCCCCCCH---HHHCCHHHHHHC-CCCCCCCCEEECCCCEEEECCHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 05885311002000210023---542012455310-23201355022255478982614675554201466666543333
Q ss_pred --HHCCC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC------CHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf --31279-9866999824898899999998788888888768871885------3023466-777665666555555554
Q gi|254780991|r 677 --RAARN-VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN------PQSVKEK-IMEVIDPILLEDAATTNI 746 (805)
Q Consensus 677 --RagR~-~~G~~il~ad~~t~~~~~ai~e~~rrr~~q~~~n~~~~i~------p~~i~k~-i~~~~~~~~~~~~~~~~~ 746 (805)
..=-. ..|.-+.=. -..+.+..++... -+-.|+. -..-.++ +.-.+++.+.-.+.....
T Consensus 376 ~i~~~~~L~~Gd~VVH~----------~hGIG~F~~l~~~-~~~~g~~~DYL~l~Ya~~~k~LyvPve~~~li~rY~G~~ 444 (997)
T TIGR00580 376 KIEDLNELKPGDYVVHK----------DHGIGKFLGLEKK-LKVLGIERDYLVLEYAGEDKKLYVPVEQLDLISRYVGGE 444 (997)
T ss_pred HHHHHHCCCCCCEEEEC----------CCCCCEEHHHHHH-HHHCCCCCCEEEEEECCCCCEEEECCCHHHHHHHHCCCC
T ss_conf 21001037998877753----------3585021422321-442476524124440277866860331244553320678
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 33334312797889999999999999999741
Q gi|254780991|r 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778 (805)
Q Consensus 747 ~~~~~~~~~~~~~~~~~i~~l~~~m~~aa~~l 778 (805)
...+....+++..|.+.-++++++.++.|.+|
T Consensus 445 ~~~p~L~kLGg~~W~~~K~kv~~~v~~iA~~L 476 (997)
T TIGR00580 445 GKNPELDKLGGKSWEKTKAKVKKSVKEIAAKL 476 (997)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89764102783889999999999999999999
No 63
>KOG0351 consensus
Probab=99.66 E-value=2e-14 Score=126.51 Aligned_cols=103 Identities=20% Similarity=0.304 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 46621478999999998635966873257645789999999973189869998458753578777117999628856744
Q gi|254780991|r 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 (805)
Q Consensus 586 l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~ 665 (805)
.+.+..+++.|.++..|...|+.+...|..+...+|..+-++|-.++++|+|+|=....|+|.|+|-+|+.+. +|
T Consensus 489 IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~-----lP 563 (941)
T KOG0351 489 IIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYS-----LP 563 (941)
T ss_pred EEEECCCCHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEEECC-----CC
T ss_conf 7996882319999999987352057552678878889999998568870899985224787778635999777-----86
Q ss_pred CCHHHHHHHHHHHCC-CCCCEEEEEECCC
Q ss_conf 460137766543127-9986699982489
Q gi|254780991|r 666 RSKTSLIQTIGRAAR-NVNSKVILYADTI 693 (805)
Q Consensus 666 ~~~~~~~q~~GRagR-~~~G~~il~ad~~ 693 (805)
.|.++|.|-+||||| |..-.++||++.-
T Consensus 564 ks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351 564 KSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEEECCHH
T ss_conf 14788887403367678800267742613
No 64
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.65 E-value=6.2e-14 Score=122.89 Aligned_cols=124 Identities=24% Similarity=0.226 Sum_probs=101.6
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC---------------------------------CEEEECCCCCCH
Q ss_conf 99999863023212466214789999999986359---------------------------------668732576457
Q gi|254780991|r 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN---------------------------------IRVRYMHSEVKT 618 (805)
Q Consensus 572 ~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~---------------------------------i~~~~~h~~~~~ 618 (805)
...|...+..+..++||++|.+.+|.|+..|.+.- +.+...||.+++
T Consensus 234 ~~~i~~~i~~hrsTLVF~NTR~~AErl~~~L~el~~erl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ia~aHHGSlSk 313 (1490)
T PRK09751 234 ETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSK 313 (1490)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 99999999726876999788799999999999999987324643221100001112222112356654334455576899
Q ss_pred HHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC--CCCCEEEEEECCCCHH
Q ss_conf 89999999973189869998458753578777117999628856744460137766543127--9986699982489889
Q gi|254780991|r 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKS 696 (805)
Q Consensus 619 ~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR--~~~G~~il~ad~~t~~ 696 (805)
.+|.++-+.|+.|+..++|+|.=|-=|+||..|.+|+-+. -|.|--+++|++||||- |...+.++|.......
T Consensus 314 e~R~~vE~~LK~G~LraVVaTSSLELGIDiG~VDlVVQvg-----sP~sVAs~lQRvGRAGH~vg~~S~g~~~p~~r~dl 388 (1490)
T PRK09751 314 EQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVA-----TPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDL 388 (1490)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCHHHCCCCCCCCEEEEEC-----CCHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHH
T ss_conf 9999999998679977899778054077644655799806-----96678899997101257889844079962877899
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780991|r 697 IQLA 700 (805)
Q Consensus 697 ~~~a 700 (805)
++-+
T Consensus 389 le~a 392 (1490)
T PRK09751 389 VDSA 392 (1490)
T ss_pred HHHH
T ss_conf 9999
No 65
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.64 E-value=6.1e-14 Score=122.97 Aligned_cols=123 Identities=21% Similarity=0.205 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 43899999999887397337998633764699999999971-----9978999316346899999999867898389986
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~-----gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~ 226 (805)
=|..||+.+.+.+.+|.+..||.=.||||||.|.+.++.++ -|-+|+||--.+|..|-++.|+.+..+..- -|.
T Consensus 420 YQ~~AI~~v~~a~~~~~rraLl~MATGTGKTrtaial~~rLlk~~~~kRILFLvDR~~L~~QA~~~F~~~~~~~~~-~~~ 498 (1126)
T PRK11448 420 YQEDAIQAVEKALANGQREILLAMATGTGKTRTAIALMYRLLKAKRFKRILFLVDRRALGEQALDAFKDTKIEGNQ-TFA 498 (1126)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCC-CCC
T ss_conf 8999999999999809854688724888589899999999996587672579856589999999987543454566-640
Q ss_pred ECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCC--------CCHHHHHCCEEEEE
Q ss_conf 2134444210155543210221035889999999999998549984998277896168--------98347722579994
Q gi|254780991|r 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI--------GSVESYSQMIVQLK 298 (805)
Q Consensus 227 S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl--------~~P~~~lglIIvdE 298 (805)
+-|+. +.+. ..-...+..|+|+|.-.+++. ..|..+-.+||+||
T Consensus 499 ~~~~v---------------~~l~-------------~~~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDE 550 (1126)
T PRK11448 499 SIYDI---------------KGLT-------------DKFPEDETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDE 550 (1126)
T ss_pred HHHHH---------------HHCC-------------CCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
T ss_conf 02200---------------1025-------------6787877719997307899875235767799998513798977
Q ss_pred CCCCC
Q ss_conf 19811
Q gi|254780991|r 299 IGDSV 303 (805)
Q Consensus 299 ehd~~ 303 (805)
.|-++
T Consensus 551 aHRgy 555 (1126)
T PRK11448 551 AHRGY 555 (1126)
T ss_pred CCCCC
T ss_conf 87887
No 66
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.62 E-value=3.4e-13 Score=117.37 Aligned_cols=327 Identities=21% Similarity=0.179 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH----H---CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 38999999998873973379986337646999999999----7---1997899931634689999999986789838998
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE----A---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~----~---~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f 225 (805)
|+.|...+......+. .++|...||+|||++-+...- + .....+.+.|=.++..+++.|++.+|+...|...
T Consensus 200 ~~~~~~~~~~~~~~~~-~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~ 278 (733)
T COG1203 200 QEKALELILRLEKRSL-LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGK 278 (733)
T ss_pred HHHHHHHHHHCCCCCC-EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 6799999873225575-189991688871999999999975311354562899655899999999999875123554331
Q ss_pred --EECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHH-------HHCCEEE
Q ss_conf --6213444421015554321022103588999999999999854998499827789616898347-------7225799
Q gi|254780991|r 226 --VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES-------YSQMIVQ 296 (805)
Q Consensus 226 --~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~-------~lglIIv 296 (805)
||....+- +.+.+- ......+..-+.. ...-+.+++.+-.-+.....+.. ...++|.
T Consensus 279 ~~h~~~~~~~----------~~~~~~---~~~~~~~~~ds~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIl 344 (733)
T COG1203 279 SLHSSSKEPL----------LLEPDQ---DILLTLTTNDSYK-KLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVIL 344 (733)
T ss_pred CCCCCCHHHH----------HHCCCC---CCCEEEEECCCCC-CCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEE
T ss_conf 0013102556----------517010---0225888124223-6204522206999855740466725778876467787
Q ss_pred EECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCC
Q ss_conf 94198111787532343117656338775453318724783178887788873104442002221016664001110000
Q gi|254780991|r 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 (805)
Q Consensus 297 dEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~ 376 (805)
||.|.= .... .-.....++..-...+...|+-|||.+.--
T Consensus 345 DE~h~~-------~~~~--~~~~l~~~i~~l~~~g~~ill~SATlP~~~------------------------------- 384 (733)
T COG1203 345 DEVHLY-------ADET--MLAALLALLEALAEAGVPVLLMSATLPPFL------------------------------- 384 (733)
T ss_pred ECHHHC-------CCCC--HHHHHHHHHHHHHHCCCCEEEEECCCCHHH-------------------------------
T ss_conf 427541-------6543--089999999999968997899927899799-------------------------------
Q ss_pred CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 10000000025636788754558998998998875443321100124444777753321120145101133311446555
Q gi|254780991|r 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456 (805)
Q Consensus 377 ~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge 456 (805)
...+..+ +...+... ++.++ |..
T Consensus 385 -----------------------~~~l~~~--------------------------~~~~~~~~--~~~~~---~~~--- 407 (733)
T COG1203 385 -----------------------KEKLKKA--------------------------LGKGREVV--ENAKF---CPK--- 407 (733)
T ss_pred -----------------------HHHHHHH--------------------------HCCCCEEC--CCCCC---CCC---
T ss_conf -----------------------9999998--------------------------50376121--34432---334---
Q ss_pred CCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 62023302654421321012344754454324565413332357665544432221110100121555454446867542
Q gi|254780991|r 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536 (805)
Q Consensus 457 ~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e 536 (805)
+++ +.. .| ..++
T Consensus 408 ----------------~~e-----~~~--------~~-------------------------------~~~~-------- 419 (733)
T COG1203 408 ----------------EDE-----PGL--------KR-------------------------------KERV-------- 419 (733)
T ss_pred ----------------CCC-----CCC--------CE-------------------------------ECCH--------
T ss_conf ----------------554-----330--------00-------------------------------0011--------
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 01322002343201244677200001331016889999998630232124662147899999999863596687325764
Q gi|254780991|r 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 (805)
Q Consensus 537 ~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~ 616 (805)
...+.+ ..++...+......+.++++-+.|...|.++.+.+.+.+..+.-+||-.
T Consensus 420 ----------------~~~~~~---------~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf 474 (733)
T COG1203 420 ----------------DVEDGP---------QEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRF 474 (733)
T ss_pred ----------------HHHCCC---------HHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf ----------------132030---------3776655677642588289999278999999999855589579988635
Q ss_pred CHHHHHHHHHHHH----CCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-C--CCCEEEEE
Q ss_conf 5789999999973----189869998458753578777117999628856744460137766543127-9--98669998
Q gi|254780991|r 617 KTLERIEIIRDLR----LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-N--VNSKVILY 689 (805)
Q Consensus 617 ~~~~r~~il~~~~----~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~--~~G~~il~ 689 (805)
....|.++++.++ .++..|+||||++.-|+|+. +..+ |-+ ++...|||||+||-+| | .+|.++.+
T Consensus 475 ~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~m-ITe------~aPidSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 475 TLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVL-ITE------LAPIDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCC-CCEE-EEC------CCCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 5766999999998887537862999834599886266-6846-634------7875679998777741566668716998
Q ss_pred ECC
Q ss_conf 248
Q gi|254780991|r 690 ADT 692 (805)
Q Consensus 690 ad~ 692 (805)
.+.
T Consensus 547 ~~~ 549 (733)
T COG1203 547 NDE 549 (733)
T ss_pred ECC
T ss_conf 346
No 67
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family; InterPro: IPR004589 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0008026 ATP-dependent helicase activity, 0006310 DNA recombination.
Probab=99.62 E-value=1.1e-12 Score=113.46 Aligned_cols=328 Identities=16% Similarity=0.181 Sum_probs=218.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 47751888888438999999998873973379986337646999999999719978999316346899999999867898
Q gi|254780991|r 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 (805)
Q Consensus 141 f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n 220 (805)
|.+ +.|.|. |-++|+.... |.++.++.=-||-||..=|==-.==.++=+||+.|=|+|-.--+..|+. ++=.
T Consensus 7 FG~-~~Frp~--Q~e~I~~~L~----g~RD~~vvMpTG~GKSLCYQ~Pa~~~~G~t~VIsPLiSLm~DQV~~L~~-~~i~ 78 (497)
T TIGR00614 7 FGL-SSFRPV--QLEVINAVLE----GRRDCLVVMPTGGGKSLCYQLPALYSDGLTLVISPLISLMEDQVLQLKA-SGIP 78 (497)
T ss_pred CCC-CCCCHH--HHHHHHHHHC----CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHH-CCCC
T ss_conf 574-445514--8999998754----8975699815898603676405675089649973636568999999874-4863
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHH--HCCCCEEEECCHHHHC---CCCCHH------H
Q ss_conf 3899862134444210155543210221035889999999999998--5499849982778961---689834------7
Q gi|254780991|r 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL--LERNDCIVVSSVSCIY---GIGSVE------S 289 (805)
Q Consensus 221 ~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l--~~~~~~IVVgsrSAIf---gl~~P~------~ 289 (805)
+- +.- +.+++.+-......+ ..|+-.++=-|.--|- .++.-+ .
T Consensus 79 A~-~L~-------------------------s~~s~~~~~~v~~~~~~k~g~~kllYvtPE~~~~~~~ll~~Le~~Y~~~ 132 (497)
T TIGR00614 79 AT-FLN-------------------------SSQSKEQQKEVLTDLSKKDGKLKLLYVTPEKISKSKSLLQTLEKLYERK 132 (497)
T ss_pred EE-CCC-------------------------CCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHCCHHHHHHHHHHHHHC
T ss_conf 01-044-------------------------3257789999999987307975899716346534647899999988644
Q ss_pred HHCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCC
Q ss_conf 72257999419811178753234311765633877545331872478317888778887310444200222101666400
Q gi|254780991|r 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369 (805)
Q Consensus 290 ~lglIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~ 369 (805)
.+-+|.|||.|=-|.+-.=+++. |.+ +..-|..|=..+.+-=.||++...
T Consensus 133 ~~~~iAvDEAHCiSqWGHDFR~~----Y~~--LG~Lk~~fP~vP~~ALTATA~~~~------------------------ 182 (497)
T TIGR00614 133 GITLIAVDEAHCISQWGHDFRPD----YKA--LGSLKQKFPNVPIMALTATASPSV------------------------ 182 (497)
T ss_pred CCEEEEEECEEEECCCCCCCCHH----HHH--HHHHHHHCCCCCEEEEECCCCHHH------------------------
T ss_conf 96699983215435888874079----999--657888548874364340578678------------------------
Q ss_pred HHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 11100001000000002563678875455899899899887544332110012444477775332112014510113331
Q gi|254780991|r 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449 (805)
Q Consensus 370 ~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L 449 (805)
+++....| + ++. ..-++..|
T Consensus 183 ------------------------------~~Di~~~L---~---------------------l~~------p~~~~~SF 202 (497)
T TIGR00614 183 ------------------------------REDILRIL---N---------------------LKN------PQVFITSF 202 (497)
T ss_pred ------------------------------HHHHHHHH---C---------------------CCC------CCEEEECC
T ss_conf ------------------------------99999872---2---------------------136------62464046
Q ss_pred CCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 14465556202330265442132101234475445432456541333235766554443222111010012155545444
Q gi|254780991|r 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529 (805)
Q Consensus 450 ~~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~s 529 (805)
++|++-|.=.++ .
T Consensus 203 ------dRPNl~y~v~~K---------------------------~---------------------------------- 215 (497)
T TIGR00614 203 ------DRPNLYYEVRRK---------------------------T---------------------------------- 215 (497)
T ss_pred ------CCCCCEEEEECC---------------------------C----------------------------------
T ss_conf ------687630340057---------------------------8----------------------------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHH----HHHCCCCC-CCCCHHHHHHHHHHHHHHH
Q ss_conf 686754201322002343201244677200001331016889999998----63023212-4662147899999999863
Q gi|254780991|r 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL----AAQQGLRI-LLTVLTKRMAEDLTEYLYE 604 (805)
Q Consensus 530 atPg~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~----~~~~~~R~-l~~~~tkr~~e~l~~~~~~ 604 (805)
--+..-++||..-|.+ ...-.+.+ .+.+.+++..|.+|..|..
T Consensus 216 --------------------------------~n~~~~~~dl~~f~~~~~~s~~~~~G~sGIIYC~SR~~~e~~a~~L~~ 263 (497)
T TIGR00614 216 --------------------------------SNTKKILEDLLRFIVKKASSAWEFKGKSGIIYCPSRKKSEQVAAELQK 263 (497)
T ss_pred --------------------------------CCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf --------------------------------970258999999987520356524588302752872348999999975
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-CCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CC
Q ss_conf 5966873257645789999999973-189869998458753578777117999628856744460137766543127-99
Q gi|254780991|r 605 RNIRVRYMHSEVKTLERIEIIRDLR-LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NV 682 (805)
Q Consensus 605 ~~i~~~~~h~~~~~~~r~~il~~~~-~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~ 682 (805)
.||.+...|..+....|.++-++|- +.++.|+|+|=--.-|+|-|+|-.|+.++ .|++-|+|.|-+||||| |.
T Consensus 264 ~G~~a~aYHAGl~~~~R~~V~~~f~nrD~~QvVvATvAFGMGInKpdvRfViH~~-----~Pk~~EsYYQE~GRAGRDgl 338 (497)
T TIGR00614 264 LGIAAGAYHAGLEISARKEVQHKFQNRDEIQVVVATVAFGMGINKPDVRFVIHYS-----LPKSMESYYQESGRAGRDGL 338 (497)
T ss_pred CCCEEEHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCEEEEEC-----CCCCCCCCCCCCCCCCCCCC
T ss_conf 5861002402688647789999875038857999872126888763536788507-----88562110135555678973
Q ss_pred CCEEEEEECCCCHH
Q ss_conf 86699982489889
Q gi|254780991|r 683 NSKVILYADTITKS 696 (805)
Q Consensus 683 ~G~~il~ad~~t~~ 696 (805)
...+++|++.-+-.
T Consensus 339 ~s~c~lfy~~aD~~ 352 (497)
T TIGR00614 339 PSECVLFYAPADIA 352 (497)
T ss_pred CCCEEEEECHHHHH
T ss_conf 20102330435699
No 68
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.62 E-value=6.2e-13 Score=115.39 Aligned_cols=97 Identities=18% Similarity=0.267 Sum_probs=70.0
Q ss_pred HHHHHHHHHHH--HCCCCCCCCCHHHHHHHHHHHHHHHCC--CEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHC
Q ss_conf 88999999863--023212466214789999999986359--66873257645789999999973189869998458753
Q gi|254780991|r 569 EDVYDEINLAA--QQGLRILLTVLTKRMAEDLTEYLYERN--IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 (805)
Q Consensus 569 ddl~~ei~~~~--~~~~R~l~~~~tkr~~e~l~~~~~~~~--i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~ak 644 (805)
.++..++.+.. ..+.|+++...+.+.++.+.++|.+.+ .....+|+.....+|+ +.++.+++|+|+.+.=
T Consensus 257 ~~~~~~~~~~~~~~~~~r~~v~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~re------k~~~~~~vVaTsaLEl 330 (357)
T TIGR03158 257 SELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRE------RAMQFDILLGTSTVDV 330 (357)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHH------CCCCCCEEEECCCCEE
T ss_conf 9999999999998526717999558999999999998633641145542556188985------0489999998770103
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 57877711799962885674446013776654312
Q gi|254780991|r 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679 (805)
Q Consensus 645 GlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRag 679 (805)
|+|| ++.+|+. + +.+-.+++||+||+|
T Consensus 331 GIDi-~~d~~i~-~------~~~v~sl~QR~GRaG 357 (357)
T TIGR03158 331 GVDF-KRDWLIF-S------ARDAAAFWQRLGRLG 357 (357)
T ss_pred EEEC-CCCEEEE-C------CCCHHHHHHCCCCCC
T ss_conf 5611-7898995-8------987888997266799
No 69
>KOG0326 consensus
Probab=99.60 E-value=2e-15 Score=134.05 Aligned_cols=112 Identities=22% Similarity=0.312 Sum_probs=98.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCC
Q ss_conf 24662147899999999863596687325764578999999997318986999845875357877711799962885674
Q gi|254780991|r 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664 (805)
Q Consensus 585 ~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f 664 (805)
..+|+..-..+|-|+.-..+.|+.+.|+|+.+.+..|.++..+||+|.+..||.|++++||+|++.|..|+|+| |
T Consensus 325 sIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFD-----f 399 (459)
T KOG0326 325 SIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFD-----F 399 (459)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCEEEEEEECC-----C
T ss_conf 59996363176798988886164366778888776542455654325320124202330465541025999637-----8
Q ss_pred CCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHH
Q ss_conf 4460137766543127-998669998248988999999
Q gi|254780991|r 665 LRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAI 701 (805)
Q Consensus 665 ~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai 701 (805)
|++.++|.|+|||+|| |.-|-+|.+.+-.+..+.+-|
T Consensus 400 pk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~I 437 (459)
T KOG0326 400 PKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRI 437 (459)
T ss_pred CCCHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHH
T ss_conf 87778999871677657876247998750324438899
No 70
>TIGR01389 recQ ATP-dependent DNA helicase RecQ; InterPro: IPR006293 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0004003 ATP-dependent DNA helicase activity, 0006310 DNA recombination, 0009432 SOS response.
Probab=99.59 E-value=3.9e-13 Score=116.89 Aligned_cols=319 Identities=17% Similarity=0.224 Sum_probs=214.7
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 18888884389999999988739733799863376469999999997-19978999316346899999999867898389
Q gi|254780991|r 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223 (805)
Q Consensus 145 ~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~-~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~ 223 (805)
++|-|- |.+-|++|.. | +..|-.==||=||.-=| |+=+= .+-=+||++|=|+|=.--++-|+. -|=+| +
T Consensus 12 ~~FR~g--Qe~II~~vL~----g-~~~l~vmPTGGGKSlCY-Q~PALll~Glt~VISPLIsLMkDQVd~L~~-~Gv~A-a 81 (607)
T TIGR01389 12 DDFRGG--QEEIIEHVLD----G-RDVLVVMPTGGGKSLCY-QVPALLLKGLTVVISPLISLMKDQVDQLRA-AGVAA-A 81 (607)
T ss_pred CCCCCH--HHHHHHHHHC----C-CCEEEECCCCCCHHHHH-HHHHHHHCCCEEEECCHHHHHHHHHHHHHH-CCCEE-E
T ss_conf 767731--5899999847----7-98589738998512777-217887289879984236314779999986-07014-5
Q ss_pred EEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEE-ECC---HHHHCCCCCHHHHHCCEEEEEC
Q ss_conf 986213444421015554321022103588999999999999854998499-827---7896168983477225799941
Q gi|254780991|r 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV-VSS---VSCIYGIGSVESYSQMIVQLKI 299 (805)
Q Consensus 224 ~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IV-Vgs---rSAIfgl~~P~~~lglIIvdEe 299 (805)
|. +|+++ ..|+.+.|.++.+|+..+. ||+ .+.=|.-..--..+.|+=+||-
T Consensus 82 ~l----------------------NSt~s---~~E~~~i~~~~~~G~~~LLYvAPERL~~~~Fl~~L~~~~i~L~AvDEA 136 (607)
T TIGR01389 82 YL----------------------NSTLS---AKEQQEIEKALVNGELKLLYVAPERLEQDYFLNMLKRLTIALLAVDEA 136 (607)
T ss_pred EE----------------------CCCCC---HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 20----------------------37788---889999999984198157751671321189998873199308998325
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEE-ECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCC
Q ss_conf 9811178753234311765633877545331872478-317888778887310444200222101666400111000010
Q gi|254780991|r 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI-EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 (805)
Q Consensus 300 hd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~IL-dsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~ 378 (805)
|=-|-|-.=++.. |.+ +....-.|-..|.++ =.||+.-++.. +-.....
T Consensus 137 HCvSQWGHDFRPe----Y~~--L~~l~~~fp~~P~~iALTATAd~~t~~------------------------DI~~~L~ 186 (607)
T TIGR01389 137 HCVSQWGHDFRPE----YRR--LGELAERFPQVPTRIALTATADAETRQ------------------------DIVELLR 186 (607)
T ss_pred CCCCCCCCCCCHH----HHH--HHHHHHHCCCCCEEEEEECCCCHHHHH------------------------HHHHHCC
T ss_conf 0216688887565----899--999998678986699872489987899------------------------9999708
Q ss_pred CHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 00000002563678875455899899899887544332110012444477775332112014510113331144655562
Q gi|254780991|r 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458 (805)
Q Consensus 379 i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P 458 (805)
+.-+.+++++..+-+-.-.-+
T Consensus 187 L~~~~~f~~SFdRpNl~~~v~----------------------------------------------------------- 207 (607)
T TIGR01389 187 LKDANEFISSFDRPNLRFSVV----------------------------------------------------------- 207 (607)
T ss_pred CCCCCCCCCCCCCHHHHHHHH-----------------------------------------------------------
T ss_conf 898654125677511433431-----------------------------------------------------------
Q ss_pred HHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 02330265442132101234475445432456541333235766554443222111010012155545444686754201
Q gi|254780991|r 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538 (805)
Q Consensus 459 ~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e 538 (805)
T Consensus 208 -------------------------------------------------------------------------------- 207 (607)
T TIGR01389 208 -------------------------------------------------------------------------------- 207 (607)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCH
Q ss_conf 32200234320124467720000133101688999999863023212466214789999999986359668732576457
Q gi|254780991|r 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618 (805)
Q Consensus 539 ~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~ 618 (805)
...+.-++|++.|.+... |.==.|.+.|.+.+|+|+++|...||.+...|..++.
T Consensus 208 ------------------------~k~n~~~~l~~yl~~~~~-G~SGIIYa~sR~~VE~~~~~L~s~G~~A~~YHAGL~~ 262 (607)
T TIGR01389 208 ------------------------KKNNKKKFLLEYLKKHRE-GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSN 262 (607)
T ss_pred ------------------------HHCCCCHHHHHHHHCCCC-CCCEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCH
T ss_conf ------------------------203781368999750799-9534787677045899999997479620403679877
Q ss_pred HHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHH
Q ss_conf 89999999973189869998458753578777117999628856744460137766543127-99866999824898899
Q gi|254780991|r 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSI 697 (805)
Q Consensus 619 ~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~ 697 (805)
..|.+..++|-.-+..|+|+|+--..|+|-|||-+|+++| .|+|-|||.|-+||||| |.+..+||+++.-+-..
T Consensus 263 ~~R~e~Q~~Fl~d~~~vmVAT~AFGMGIdKpnVRFViH~d-----~P~~~EsYYQE~GRAGRDGlpae~~lly~~~D~~l 337 (607)
T TIGR01389 263 KVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHAD-----MPKNIESYYQEAGRAGRDGLPAEAILLYSLADIAL 337 (607)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCEEEEEC-----CCCCHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHH
T ss_conf 6899997544462554888871235874787654888636-----87421113103554688752677867247778999
No 71
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.58 E-value=2.2e-10 Score=96.29 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHHHCCC--CCEEEEHHHHH
Q ss_conf 16889999998630232124662147899999999863-5966873257645789999999973189--86999845875
Q gi|254780991|r 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGK--FDVLVGINLLR 643 (805)
Q Consensus 567 qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~-~~i~~~~~h~~~~~~~r~~il~~~~~g~--~diLvgt~~~a 643 (805)
.++-|++-++.. ..++++|+|..+..++.|.++|.. .|+.+..+|++++..+|++....|+..+ +.|||+|+..+
T Consensus 480 rv~~Li~~Lk~~--~~eKvLVFte~~~Ta~~L~~~Lr~~~Gi~~avfh~gms~~ERdraaa~Fa~~e~gaqVLI~TEags 557 (955)
T PRK04914 480 RVEWLIDFLKSH--RSEKVLVICAKAETALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (955)
T ss_pred HHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 999999999857--798589996838999999999987559956997099998999999998617677851999725212
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHH
Q ss_conf 3578777117999628856744460137766543127-998669998248988999999
Q gi|254780991|r 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAI 701 (805)
Q Consensus 644 kGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai 701 (805)
+|++|--+.++++|| +|-++.-+-|||||--| |..-.|-+|+--..++.+..+
T Consensus 558 EG~NLQF~~~LVnyD-----LPWNP~rLEQRIGRlDRiGQ~~dV~Ihvpy~~~s~q~~l 611 (955)
T PRK04914 558 EGRNFQFASHLVLFD-----LPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERL 611 (955)
T ss_pred CCCCHHHHHHHEECC-----CCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH
T ss_conf 450377743523525-----898765889985206542786750798620289889999
No 72
>KOG0337 consensus
Probab=99.58 E-value=6.7e-14 Score=122.67 Aligned_cols=106 Identities=24% Similarity=0.233 Sum_probs=101.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 32124662147899999999863596687325764578999999997318986999845875357877711799962885
Q gi|254780991|r 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 (805)
Q Consensus 582 ~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~ 661 (805)
..++++++.|+..+|.+...|...|+...++-|++++..|..-+++|+.++..+||-|+++|+|+|||-..-|+|||
T Consensus 261 ~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd--- 337 (529)
T KOG0337 261 DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYD--- 337 (529)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEHHHHCCCCCCCCCCCCCCC---
T ss_conf 66506983153047898878986398744111445867665042034677552599842333358876544656456---
Q ss_pred CCCCCCHHHHHHHHHHHCC-CCCCEEEEEECC
Q ss_conf 6744460137766543127-998669998248
Q gi|254780991|r 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYADT 692 (805)
Q Consensus 662 ~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~ 692 (805)
||.+...++|+.||++| |..|.++.++..
T Consensus 338 --~p~~~klFvhRVgr~aragrtg~aYs~V~~ 367 (529)
T KOG0337 338 --FPPDDKLFVHRVGRVARAGRTGRAYSLVAS 367 (529)
T ss_pred --CCCCCCEEEEEECCHHHCCCCCEEEEEEEC
T ss_conf --799875588871222214566237999722
No 73
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.57 E-value=6.9e-13 Score=115.07 Aligned_cols=125 Identities=20% Similarity=0.231 Sum_probs=96.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 888843899999999887397337998633764699999999971-----997899931634689999999986789838
Q gi|254780991|r 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222 (805)
Q Consensus 148 ~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~-----gr~aLvLvPei~La~QL~~rfk~~Fp~n~V 222 (805)
.|--=|..||..+.+.+.+|.+..||-=.||+|||.|-+++|-++ -|-+|+|+--.+|--|.++.|..|+|+..+
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~ 244 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTK 244 (875)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEHHHHHHHHHHCCHHHEEEEEECHHHHHHHHHHHHHHHCCCCCC
T ss_conf 62278899999999998668744899970588852319999999996141430567612678999999999963988640
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCC-------CHH--HHHCC
Q ss_conf 998621344442101555432102210358899999999999985499849982778961689-------834--77225
Q gi|254780991|r 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG-------SVE--SYSQM 293 (805)
Q Consensus 223 ~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~-------~P~--~~lgl 293 (805)
+-+++-.... +...|.|++.-+++|.. .|+ .+-.+
T Consensus 245 ~n~i~~~~~~------------------------------------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDl 288 (875)
T COG4096 245 MNKIEDKKGD------------------------------------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDL 288 (875)
T ss_pred EEEECCCCCC------------------------------------CCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf 1232014678------------------------------------6305887603778756406545655678883128
Q ss_pred EEEEECCCCCCHHHH
Q ss_conf 799941981117875
Q gi|254780991|r 294 IVQLKIGDSVEQKEL 308 (805)
Q Consensus 294 IIvdEehd~~~~~~~ 308 (805)
||+||.|-+|+..+.
T Consensus 289 IvIDEaHRgi~~~~~ 303 (875)
T COG4096 289 IVIDEAHRGIYSEWS 303 (875)
T ss_pred EEECHHHHHHHHHHH
T ss_conf 996066666787667
No 74
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=99.50 E-value=2.7e-11 Score=103.15 Aligned_cols=324 Identities=19% Similarity=0.293 Sum_probs=191.9
Q ss_pred HHHHHHHH-HHHHHCCCCEEEEEEECCCCHHHH---HHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHCCCCE--E---
Q ss_conf 38999999-998873973379986337646999---99999971-99789993163468999999998678983--8---
Q gi|254780991|r 153 QPAAIAQL-LKGIHSREKVQLLLGVTGSGKTFT---MAKVIEAM-QRPAIVMAPNKILAAQLYSEFKNFFPHNA--V--- 222 (805)
Q Consensus 153 Q~~Ai~~L-~~~l~~g~~~qlL~GVTGSGKTev---ya~lI~~~-gr~aLvLvPei~La~QL~~rfk~~Fp~n~--V--- 222 (805)
.|-+|++. ...+-.| +.+=..-=||-|||.. |+--.+.. |+-++|++|.-.|+.|.+++++++-.++- +
T Consensus 84 ~pws~Qk~WAKRv~~~-~SFai~APTGVGKttFG~~mslflA~kKGkR~y~ilPT~lLv~Qv~~kl~~~~~k~g~~~~~l 162 (1843)
T TIGR01054 84 EPWSIQKSWAKRVLKG-DSFAIVAPTGVGKTTFGLVMSLFLAKKKGKRSYIILPTTLLVKQVAEKLSSLAEKEGVGIVRL 162 (1843)
T ss_pred CCHHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 8435679999996417-964898058876779999999998654298789994707889999999875200257500002
Q ss_pred -EEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHH---CCCCCHHHHHCCEEEEE
Q ss_conf -99862134444210155543210221035889999999999998549984998277896---16898347722579994
Q gi|254780991|r 223 -EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI---YGIGSVESYSQMIVQLK 298 (805)
Q Consensus 223 -~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAI---fgl~~P~~~lglIIvdE 298 (805)
.+|||.+. .++|-+...++.+|+-.|+|+|-.=+ |-.+.|--.-.+||||-
T Consensus 163 ~~~yhS~L~-------------------------~~~kke~~Eri~~GDfdilitT~~FL~K~~~~L~~~y~F~liFVDD 217 (1843)
T TIGR01054 163 LGAYHSKLS-------------------------TKEKKEVKERIENGDFDILITTSMFLSKNFDKLKNQYKFDLIFVDD 217 (1843)
T ss_pred EEEEECCCC-------------------------HHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 221011265-------------------------4567889998731891786122468887665178985144899715
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCC
Q ss_conf 19811178753234311765633877545331872478317888778887310444200222101666400111000010
Q gi|254780991|r 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 (805)
Q Consensus 299 ehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~ 378 (805)
+.= + ++-.+| .| .-..+-+|..|+-
T Consensus 218 VDa------~------Lk~skN----------------------VD-~~L~LlGF~eE~i-------------------- 242 (1843)
T TIGR01054 218 VDA------L------LKASKN----------------------VD-KILKLLGFSEELI-------------------- 242 (1843)
T ss_pred HHH------H------HHCCCC----------------------HH-HHHHHHCCCHHHH--------------------
T ss_conf 367------6------316555----------------------66-7775517889999--------------------
Q ss_pred CHHHHHCCCCHHHHHHHHHHHHH---------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 00000002563678875455899---------899899--8875443321100124444777753321120145101133
Q gi|254780991|r 379 IYANSHYVTPRPTLNTAMKYIKE---------ELKMRL--IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447 (805)
Q Consensus 379 i~Pa~~~v~~~e~l~~a~~~i~~---------el~~rl--~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~ 447 (805)
+.|-..|.. .+..+. .......+++|..++.++.+.....-+ +...
T Consensus 243 --------------~~a~~~i~L~~k~~k~~~~~~~~~~~~R~E~~~~~LE~~~r~~~~~a~~~~kr---------Gr~g 299 (1843)
T TIGR01054 243 --------------EKAYELIKLKLKENKLEEDLAREKIVVRLEARKKLLEAKRRLEKLEAEIKKKR---------GRKG 299 (1843)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CCCE
T ss_conf --------------99999999988764357788888886467888999999999898776474324---------8864
Q ss_pred HHCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 31144655562023302654421321012344754454324565413332357665544432221110100121555454
Q gi|254780991|r 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527 (805)
Q Consensus 448 ~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~ 527 (805)
+| ++- .-.+-.+|++.+ +=.-.|.|+
T Consensus 300 ~L----------------------ivs-------SATG~prG~r~~--------------LFR~LL~Fe----------- 325 (1843)
T TIGR01054 300 VL----------------------IVS-------SATGKPRGKRVK--------------LFRELLGFE----------- 325 (1843)
T ss_pred EE----------------------EEE-------ECCCCCCCCHHH--------------HHHHHCCCC-----------
T ss_conf 69----------------------998-------514888761336--------------536552710-----------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCEECCCCCH--HHHHHH--HHHHHHHCCCCCCCCCH-HHHHHHHHHHH
Q ss_conf 446867542013220023432012446-7720000133101--688999--99986302321246621-47899999999
Q gi|254780991|r 528 VSATPGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRSARTQ--VEDVYD--EINLAAQQGLRILLTVL-TKRMAEDLTEY 601 (805)
Q Consensus 528 ~satPg~~e~e~~~~~~~eqi~rptg~-idp~ieir~~~~q--vddl~~--ei~~~~~~~~R~l~~~~-tkr~~e~l~~~ 601 (805)
|..+.-. +=..|.+-..... .+.|.+ |+-+.-.+|-.|+|-+. -+-.|+++.++
T Consensus 326 --------------------vG~~~~~GLRnvvD~y~~~~d~v~E~~~~sve~v~~LG~GGlVyvs~~yG~e~a~ei~~~ 385 (1843)
T TIGR01054 326 --------------------VGKGSDTGLRNVVDVYEEDEDGVKEKLLESVELVKKLGKGGLVYVSIDYGKEKAEEIKEF 385 (1843)
T ss_pred --------------------CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
T ss_conf --------------------057642233213885114888446889999999998479439997122255899999999
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEH----HHHHCCCCCCCCCEEEEEC
Q ss_conf 86359668732576457899999999731898699984----5875357877711799962
Q gi|254780991|r 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI----NLLREGLDIPECGLVAILD 658 (805)
Q Consensus 602 ~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt----~~~akGlD~p~v~lV~i~d 658 (805)
|.+.||++..+|+.... +-++.|..|++|||||+ +.|.||||+|++.==+|+-
T Consensus 386 L~~~Gv~A~~~~~~k~~----~~~~~F~~GE~dVliG~a~yyg~LVRGLDLP~rvRYAvF~ 442 (1843)
T TIGR01054 386 LREHGVKAVAYHAKKPK----EDLEKFAEGEIDVLIGVASYYGVLVRGLDLPERVRYAVFL 442 (1843)
T ss_pred HHHCCCEEEEEEECCCC----CCHHHHHCCCEEEEEEEECCCCCEEECCCCCCHHEEEEEC
T ss_conf 98579479998403773----2034663485136877101547635326661010002343
No 75
>PRK09694 hypothetical protein; Provisional
Probab=99.47 E-value=7e-11 Score=100.03 Aligned_cols=357 Identities=13% Similarity=0.103 Sum_probs=193.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 4775188888843899999999887397337998633764699999999971-----99789993163468999999998
Q gi|254780991|r 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKILAAQLYSEFKN 215 (805)
Q Consensus 141 f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~-----gr~aLvLvPei~La~QL~~rfk~ 215 (805)
|.-.+.+-|.|.+|..+++++..+..+-.-.+|--.|||||||--+-+..++ .....+..|..+-+.+||.|+..
T Consensus 276 ~~~~~~~l~~~~~PrplQ~~~~~l~~~PgL~IiEAptG~GKTEAAL~~A~~L~~~~~~~Gl~faLPT~ATaNaMf~Rv~~ 355 (878)
T PRK09694 276 YGGVHALLDNGYQPRQLQTLVDALPLAPGLTVIEAPTGSGKTETALAYAWKLIDQQLADSVIFALPTQATANAMLSRMEA 355 (878)
T ss_pred CCCCHHHCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 65413331789999679999984567998799975899975899999999999734898369977479889999999999
Q ss_pred ----HCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCC---CCEEEECCHHHHCCCCCHH
Q ss_conf ----678983899862134444210155543210221035889999999999998549---9849982778961689834
Q gi|254780991|r 216 ----FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIYGIGSVE 288 (805)
Q Consensus 216 ----~Fp~n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~---~~~IVVgsrSAIfgl~~P~ 288 (805)
.|++..|.+.||...++.....++..+..-. .++-.......|-+-.+. -..|+|||+-=+.-...|.
T Consensus 356 ~~~~~~~~~~v~LaHg~a~l~~~~~~l~~~~~~~~-----~~~~~~~~~~~W~~~~~Kr~LLap~~VGTiDQaLla~L~~ 430 (878)
T PRK09694 356 AASKLFPSPNLILAHGNSRFNHLFQSIKSRAITEQ-----GQEEAWVQCCQWLSQSNKRVFLGQIGVCTIDQVLISVLPV 430 (878)
T ss_pred HHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCC-----CCCCHHHHHHHHHCCCHHHHHCCCCEECCHHHHHHHHHCC
T ss_conf 99973689976974473655056665101367654-----4543015777664111022313771546799999987461
Q ss_pred H--HH-------CCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHH
Q ss_conf 7--72-------25799941981117875323431176563387754533187247831788877888731044420022
Q gi|254780991|r 289 S--YS-------QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359 (805)
Q Consensus 289 ~--~l-------glIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~ 359 (805)
. ++ +.+|+||+|-- +.+.. .|-. .+-.+.+.+. ..+||=|||....- |
T Consensus 431 kH~~LR~~gLa~kvvIiDEVHAY---D~Ym~-----~lL~-~lL~wl~~~g-~~viLLSATLP~~~---R---------- 487 (878)
T PRK09694 431 KHRFIRGLGIGRSVLIVDEVHAY---DAYMN-----GLLE-AVLKAQAQVG-GSVILLSATLPMTQ---K---------- 487 (878)
T ss_pred CHHHHHHHHHCCCEEEEECCCCC---CHHHH-----HHHH-HHHHHHHHCC-CCEEEEECCCCHHH---H----------
T ss_conf 48999999862874897253334---58899-----9999-9999999839-98899927898999---9----------
Q ss_pred HHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 21016664001110000100000000256367887545589989989988754433211001244447777533211201
Q gi|254780991|r 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439 (805)
Q Consensus 360 I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~ 439 (805)
+.+..+- + |..
T Consensus 488 ------------------------------~~L~~ay-----------------~----------------------~~~ 498 (878)
T PRK09694 488 ------------------------------QKLLDTY-----------------G----------------------LHT 498 (878)
T ss_pred ------------------------------HHHHHHH-----------------C----------------------CCC
T ss_conf ------------------------------9999975-----------------5----------------------688
Q ss_pred CCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 45101133311446555620233026544213210123447544543245654133323576655444322211101001
Q gi|254780991|r 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519 (805)
Q Consensus 440 ~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~ 519 (805)
. + ..+.. -+| .+.+.+. ...+.+ +.+..
T Consensus 499 ~-------------~-~~~~~---~YP--~it~~~~--~~~~~~---------------------~~~~~---------- 526 (878)
T PRK09694 499 D-------------P-VENNS---AYP--LINWRGV--NGAQRF---------------------DLLAH---------- 526 (878)
T ss_pred C-------------C-CCCCC---CCC--EEEECCC--CCCCCC---------------------CCCCC----------
T ss_conf 7-------------6-66677---886--1363155--666753---------------------44655----------
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 21555454446867542013220023432012446772000013310168899999986302321246621478999999
Q gi|254780991|r 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599 (805)
Q Consensus 520 ~~~~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~ 599 (805)
..+... ++......++.. ..-..+++++...+..|.+++|...|-..|.++.
T Consensus 527 ----------~~~~~~-----------~v~~~~~~~~~~-------~~~~~~~~~l~~~~~~G~~v~vI~NTV~rAq~~y 578 (878)
T PRK09694 527 ----------QLPPRF-----------SIQPEPICLADM-------LPDLTMLERMIAAANAGAQVCVICNLVDDAQVCY 578 (878)
T ss_pred ----------CCCCCC-----------EEEEEEEECCCC-------CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf ----------567772-----------378887631444-------7648999999999978995999938899999999
Q ss_pred HHHHHC---CCEEEECCCCCCHHHHHH----HHHHHHCC----CCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCH
Q ss_conf 998635---966873257645789999----99997318----9869998458753578777117999628856744460
Q gi|254780991|r 600 EYLYER---NIRVRYMHSEVKTLERIE----IIRDLRLG----KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668 (805)
Q Consensus 600 ~~~~~~---~i~~~~~h~~~~~~~r~~----il~~~~~g----~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~ 668 (805)
+.|.+. ...+.-+||--...+|.+ +++.|.++ .-.||||||++.--|||.-=.+|- -+...
T Consensus 579 ~~L~~~~~~~~~v~L~HsRF~~~DR~~~E~~vl~~~Gk~~~r~~g~IlVaTQVvEQSLDiDfD~liT--------DLAPi 650 (878)
T PRK09694 579 QRLKELNNTQVDIDLFHARFTFNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDLDFDWLIT--------QHCPA 650 (878)
T ss_pred HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCHHHC--------CCCCH
T ss_conf 9999852899877998688877669999999999868898899986999773332430335330110--------46869
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 13776654312799
Q gi|254780991|r 669 TSLIQTIGRAARNV 682 (805)
Q Consensus 669 ~~~~q~~GRagR~~ 682 (805)
..|+||+||-=|+.
T Consensus 651 DlLlQR~GRLhRH~ 664 (878)
T PRK09694 651 DLLFQRMGRLHRHH 664 (878)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99998742320589
No 76
>PRK09401 reverse gyrase; Reviewed
Probab=99.45 E-value=3.9e-10 Score=94.48 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=93.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH---HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 547751888888438999999998873973379986337646999---99999971997899931634689999999986
Q gi|254780991|r 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216 (805)
Q Consensus 140 ~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTev---ya~lI~~~gr~aLvLvPei~La~QL~~rfk~~ 216 (805)
.|+=..-|.|-|=|..=.+.+.. | +.+.+.-=||.|||-. |+--.+.-||.+++++|..+|..|.+.+++.+
T Consensus 70 fF~~~~G~~~w~~Qr~WakR~~~----g-~SFaiiAPTG~GKTtfgl~~sly~a~kgkks~~i~PT~~Lv~Q~~~kl~~~ 144 (1176)
T PRK09401 70 FFKKKVGSEPWSLQRTWAKRLLL----G-ESFAIIAPTGVGKTTFGLVMALYLAKKGKKSYIIFPTRLLVEQVVEKLRKL 144 (1176)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHC----C-CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 99998689984889999999866----8-974898889988889999999999865983999968889999999999999
Q ss_pred C---CC-CEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCC--CHHHH
Q ss_conf 7---89-838998621344442101555432102210358899999999999985499849982778961689--83477
Q gi|254780991|r 217 F---PH-NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG--SVESY 290 (805)
Q Consensus 217 F---p~-n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~--~P~~~ 290 (805)
- +- -.+.+|||... ..++-++..++.+|+-.|.|.|-.=++.-- .|-..
T Consensus 145 ~~~~~~~~~~~~y~~~~~-------------------------~~~kee~~~~~~~gdfdIlitT~~fl~kn~~~l~~~~ 199 (1176)
T PRK09401 145 AEKVGVKVRLLYYHSSLK-------------------------KKEKEEFLERLEEGDFDILVTTSQFLSKNFDELPKDR 199 (1176)
T ss_pred HHHHCCCCEEEEEECCCC-------------------------HHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCC
T ss_conf 997099840899856776-------------------------6678999988655998689985676765487603568
Q ss_pred HCCEEEEECCC
Q ss_conf 22579994198
Q gi|254780991|r 291 SQMIVQLKIGD 301 (805)
Q Consensus 291 lglIIvdEehd 301 (805)
..+|++|.+.-
T Consensus 200 f~fifvDDVDs 210 (1176)
T PRK09401 200 FDFVFVDDVDA 210 (1176)
T ss_pred CCEEEEECHHH
T ss_conf 88899934187
No 77
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.41 E-value=6.4e-10 Score=92.84 Aligned_cols=130 Identities=19% Similarity=0.257 Sum_probs=89.6
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH---HHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 7547751888888438999999998873973379986337646999---9999997199789993163468999999998
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTev---ya~lI~~~gr~aLvLvPei~La~QL~~rfk~ 215 (805)
..|+=..-|.|-|-|.-=.+.++. | +.+...-=||.|||-. |+-..+..||.+++++|..+|+.|.+.+++.
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR~~r----g-~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKRLVR----G-KSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHC----C-CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 999986389860788999999873----7-84489827887654799999999875587499996678999999999999
Q ss_pred HCCCCE-----EEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHC---CCCCH
Q ss_conf 678983-----8998621344442101555432102210358899999999999985499849982778961---68983
Q gi|254780991|r 216 FFPHNA-----VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY---GIGSV 287 (805)
Q Consensus 216 ~Fp~n~-----V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIf---gl~~P 287 (805)
+-.+.. +. |||.+. .+++-++..++.+|+-.|+|+|-.=+. -.+.+
T Consensus 148 ~~e~~~~~~~~~~-yh~~l~-------------------------~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~ 201 (1187)
T COG1110 148 FAEDAGSLDVLVV-YHSALP-------------------------TKEKEEALERIESGDFDILITTSQFLSKRFEELSK 201 (1187)
T ss_pred HHHHCCCCCEEEE-ECCCCC-------------------------HHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCC
T ss_conf 8865378524665-312366-------------------------57799999998659963999747878866998404
Q ss_pred HHHHCCEEEEECC
Q ss_conf 4772257999419
Q gi|254780991|r 288 ESYSQMIVQLKIG 300 (805)
Q Consensus 288 ~~~lglIIvdEeh 300 (805)
-...+|++|.+.
T Consensus 202 -~kFdfifVDDVD 213 (1187)
T COG1110 202 -LKFDFIFVDDVD 213 (1187)
T ss_pred -CCCCEEEECCHH
T ss_conf -577789980478
No 78
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.39 E-value=1.1e-12 Score=113.47 Aligned_cols=80 Identities=43% Similarity=0.615 Sum_probs=76.5
Q ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 99999986359668732576457899999999731898699984587535787771179996288567444601377665
Q gi|254780991|r 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675 (805)
Q Consensus 596 e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~ 675 (805)
+.|+++|.+.|+.+..+||++++.+|.++++.|+.|+++|||+|+++++|+|+|++++|++++ .+.+...|+|++
T Consensus 1 ~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~f~~~~~~ilv~t~~~~~Gidl~~~~~vI~~~-----~~~~~~~~~Q~~ 75 (82)
T smart00490 1 EELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYD-----LPWSPASYIQRI 75 (82)
T ss_pred CHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCEEEEEC-----CCCCHHHHHHHH
T ss_conf 978999988899199998969999999999999879971999950242114898899999978-----996989999997
Q ss_pred HHHCC
Q ss_conf 43127
Q gi|254780991|r 676 GRAAR 680 (805)
Q Consensus 676 GRagR 680 (805)
||++|
T Consensus 76 GR~~R 80 (82)
T smart00490 76 GRAGR 80 (82)
T ss_pred CCCCC
T ss_conf 25878
No 79
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.36 E-value=2.7e-09 Score=88.11 Aligned_cols=87 Identities=23% Similarity=0.254 Sum_probs=69.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC-------CC------CCCCHHHH
Q ss_conf 596687325764578999999997318986999845875357877711799962885-------67------44460137
Q gi|254780991|r 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EG------FLRSKTSL 671 (805)
Q Consensus 605 ~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~-------~~------f~~~~~~~ 671 (805)
.++...-+||.++..+..+++..-..|.-.|+++||++.-.+.||+|.+|+--.--+ .| -+-|--|-
T Consensus 238 ~~~~i~pL~g~l~~~~Q~~~~~~~~~g~rKvIlaTnIAEtSlTI~gV~~VIDsG~~r~~~~d~~~g~~~L~~~~iSkasa 317 (812)
T PRK11664 238 SDVLLCPLYGALSLAEQQKAILPAPAGMRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLETQRISQASM 317 (812)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHCEEEECCEEEEEECHHHHHHEECCCCCCCEEEEEECCHHHH
T ss_conf 78089964478998898776067999953799950200020201781489740223443234357975676770454435
Q ss_pred HHHHHHHCCCCCCEEE-EEEC
Q ss_conf 7665431279986699-9824
Q gi|254780991|r 672 IQTIGRAARNVNSKVI-LYAD 691 (805)
Q Consensus 672 ~q~~GRagR~~~G~~i-l~ad 691 (805)
.||+|||||-.+|.++ ||..
T Consensus 318 ~QRaGRAGR~~pG~cyRL~s~ 338 (812)
T PRK11664 318 TQRAGRAGRLEPGICLHLYAK 338 (812)
T ss_pred HCCCCCCCCCCCCEEEEEECH
T ss_conf 313676788899707873359
No 80
>KOG0352 consensus
Probab=99.35 E-value=8.3e-10 Score=92.01 Aligned_cols=111 Identities=21% Similarity=0.203 Sum_probs=100.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 46621478999999998635966873257645789999999973189869998458753578777117999628856744
Q gi|254780991|r 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665 (805)
Q Consensus 586 l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~ 665 (805)
+|.+.|..-.|.++-.+..+||.++..|..+++.+|.++-++..++++-|+++|.-...|.|-|+|.+|+..| .+
T Consensus 259 IVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~-----~~ 333 (641)
T KOG0352 259 IVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWS-----PS 333 (641)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECC-----HH
T ss_conf 7996028899989887532476267765001411268899998627887799960244466877615999517-----05
Q ss_pred CCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHH
Q ss_conf 460137766543127-998669998248988999999
Q gi|254780991|r 666 RSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAI 701 (805)
Q Consensus 666 ~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai 701 (805)
++--.|.|-.||||| |...-+-||+.+.+..-.+.+
T Consensus 334 qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352 334 QNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHH
T ss_conf 6578998861535667772520133321405777799
No 81
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.32 E-value=3.6e-08 Score=79.74 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHHH----HCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHH
Q ss_conf 016889999998630-23212466214789999999986----3596687325764578999999997318986999845
Q gi|254780991|r 566 TQVEDVYDEINLAAQ-QGLRILLTVLTKRMAEDLTEYLY----ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 (805)
Q Consensus 566 ~qvddl~~ei~~~~~-~~~R~l~~~~tkr~~e~l~~~~~----~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~ 640 (805)
...+.+.+.|...+. .+.++||.-...++-+.+.+.+. ..++....- +++...|.++++.|+.++--||+||+
T Consensus 739 ~~~~~la~~i~~l~~~~~G~~LVLFtS~~~L~~v~~~l~~~~~~~~~~ll~Q--g~~~~sr~~ll~~F~~~~~svLlGt~ 816 (932)
T PRK08074 739 EYIEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQ--GVTGGSRARLMKKFQQFDKAILLGTS 816 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEE--CCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf 9999999999999987299999992659999999999864333579559987--89875099999999847984999656
Q ss_pred HHHCCCCCCCCC--EEEEECCC--CCCCCC--------------CH---------HHHHHHHHHHCCCC--CCEEEEEEC
Q ss_conf 875357877711--79996288--567444--------------60---------13776654312799--866999824
Q gi|254780991|r 641 LLREGLDIPECG--LVAILDAD--KEGFLR--------------SK---------TSLIQTIGRAARNV--NSKVILYAD 691 (805)
Q Consensus 641 ~~akGlD~p~v~--lV~i~dAD--~~~f~~--------------~~---------~~~~q~~GRagR~~--~G~~il~ad 691 (805)
-..+|+|+|+-. +|+|.--- .|+-|- .+ --+.|-+||-=|.. .|.+++.=.
T Consensus 817 SFwEGVDlpGd~L~~ViI~kLPF~~P~dP~~~ar~e~l~~~G~n~F~~~~LP~AvlrlkQg~GRLIRs~~DrGvvvilD~ 896 (932)
T PRK08074 817 SFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKKQGENPFQKLSLPQAVLRFKQGFGRLIRTETDRGTVFVLDR 896 (932)
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 64356227998868999980899988989999999999982899535625999999999961026478987699999877
Q ss_pred C
Q ss_conf 8
Q gi|254780991|r 692 T 692 (805)
Q Consensus 692 ~ 692 (805)
+
T Consensus 897 R 897 (932)
T PRK08074 897 R 897 (932)
T ss_pred C
T ss_conf 6
No 82
>pfam00271 Helicase_C Helicase conserved C-terminal domain. The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.
Probab=99.32 E-value=3.4e-12 Score=109.90 Aligned_cols=75 Identities=37% Similarity=0.569 Sum_probs=71.9
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 98635966873257645789999999973189869998458753578777117999628856744460137766543127
Q gi|254780991|r 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680 (805)
Q Consensus 601 ~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR 680 (805)
+|...|+++..+||+++..+|.+++++|++|+++|||+|+++++|+|+|++++|+++| .+.+...|+|++||++|
T Consensus 2 ~l~~~g~~~~~i~g~~~~~~R~~~~~~f~~~~~~ilv~t~~~~~Gid~~~~~~vi~~~-----~~~s~~~~~Q~~GR~~R 76 (78)
T pfam00271 2 LLRKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNVVINYD-----LPWNPASYIQRIGRAGR 76 (78)
T ss_pred CHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEC-----CCCCHHHHHHHHCCCCC
T ss_conf 4556898599986979999999999999879973999925652567787899999978-----99698999999726877
No 83
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.31 E-value=6.8e-11 Score=100.11 Aligned_cols=153 Identities=18% Similarity=0.093 Sum_probs=106.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 88888843899999999887397337998633764699999999971-----9978999316346899999999867898
Q gi|254780991|r 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKILAAQLYSEFKNFFPHN 220 (805)
Q Consensus 146 ~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~-----gr~aLvLvPei~La~QL~~rfk~~Fp~n 220 (805)
.+.|...|.+|+..+.++. +..++.+-||||||++++..+.+. +.++||++|.++|+.|.+.+|..+|++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~----~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~q~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL----RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHCCC----CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 9999988999999998389----988998999960999999999998633899759999085999999998860102102
Q ss_pred E---EEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCC----CHHHHHCC
Q ss_conf 3---8998621344442101555432102210358899999999999985499849982778961689----83477225
Q gi|254780991|r 221 A---VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG----SVESYSQM 293 (805)
Q Consensus 221 ~---V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~----~P~~~lgl 293 (805)
. +.++.+. .+...|..+.++...|+|+|...+.... .-....++
T Consensus 82 ~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~ 132 (201)
T smart00487 82 GLKVVGLYGGD-----------------------------SKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDL 132 (201)
T ss_pred EEEEEEEECCC-----------------------------CHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEE
T ss_conf 04455652477-----------------------------3799999997599989995589999999727545254319
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHH--HCCCCEEEECCCCCH
Q ss_conf 79994198111787532343117656338775453--318724783178887
Q gi|254780991|r 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT--FRVCGDSIEIFPSHL 343 (805)
Q Consensus 294 IIvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~--f~~rg~ILdsatps~ 343 (805)
+|+||.|.-.+. .+......-.. ....-.+.=+|||..
T Consensus 133 vIiDE~H~~~~~------------~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 172 (201)
T smart00487 133 VILDEAHRLLDG------------GFGDQLEKLLKLLPKNVQLLLLSATPPE 172 (201)
T ss_pred EEEECHHHHHCC------------CCHHHHHHHHHHCCCCCCEEEECCCCCH
T ss_conf 999896775125------------7099999999967999978999248986
No 84
>KOG0952 consensus
Probab=99.29 E-value=8.7e-10 Score=91.85 Aligned_cols=120 Identities=23% Similarity=0.343 Sum_probs=80.7
Q ss_pred HHHHHHHHHCCCCCCCCCHHHH----HHHHHHHHHHHCCCEEEECCCC-------------------CCHHHHHHHHHHH
Q ss_conf 9999986302321246621478----9999999986359668732576-------------------4578999999997
Q gi|254780991|r 572 YDEINLAAQQGLRILLTVLTKR----MAEDLTEYLYERNIRVRYMHSE-------------------VKTLERIEIIRDL 628 (805)
Q Consensus 572 ~~ei~~~~~~~~R~l~~~~tkr----~~e~l~~~~~~~~i~~~~~h~~-------------------~~~~~r~~il~~~ 628 (805)
.+++.+....|..++||+-+.. .|..|.+.....|....-.++. +-...|.-.-+.|
T Consensus 339 ~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F 418 (1230)
T KOG0952 339 YDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEF 418 (1230)
T ss_pred HHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999999749859999965748999999999998862865656788366789999874010202564314689999998
Q ss_pred HCCCCCEEEEHHHHHCCCCCCCCCEEEEECCC-----CCCCCCC-HHHHHHHHHHHCC-C--CCCEEEEEECC
Q ss_conf 31898699984587535787771179996288-----5674446-0137766543127-9--98669998248
Q gi|254780991|r 629 RLGKFDVLVGINLLREGLDIPECGLVAILDAD-----KEGFLRS-KTSLIQTIGRAAR-N--VNSKVILYADT 692 (805)
Q Consensus 629 ~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD-----~~~f~~~-~~~~~q~~GRagR-~--~~G~~il~ad~ 692 (805)
..|.+.||+.|--+|=|..+|-- +|+|-.-+ +.+|--- --.-+|..||||| . ..|.+|+-++.
T Consensus 419 ~~G~i~vL~cTaTLAwGVNLPA~-aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~ 490 (1230)
T KOG0952 419 KEGHIKVLCCTATLAWGVNLPAY-AVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTR 490 (1230)
T ss_pred HCCCCEEEEECCEEEECCCCCCE-EEEECCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCEEEEEECC
T ss_conf 55982289961213312577641-8986487411356684354028888998720689987777628999665
No 85
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.28 E-value=1.7e-08 Score=82.19 Aligned_cols=144 Identities=16% Similarity=0.166 Sum_probs=90.7
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC--CCCEEEEECC------HHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 99999887397337998633764699999999971--9978999316------346899999999867898389986213
Q gi|254780991|r 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM--QRPAIVMAPN------KILAAQLYSEFKNFFPHNAVEYFVSYY 229 (805)
Q Consensus 158 ~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~--gr~aLvLvPe------i~La~QL~~rfk~~Fp~n~V~~f~S~~ 229 (805)
++|.+.|+++ +..++-|=||||||-=.-+.+-+. |....|.+-. +++|.....++..-.|+ .|.|-|-+-
T Consensus 80 ~~i~~~i~~n-qVvii~GeTGsGKTTQiPq~~le~g~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~-~VGY~VRf~ 157 (1295)
T PRK11131 80 QDILEAIRDH-QVVIVAGETGSGKTTQLPKICLELGRGIKGLIGHTQPRRLAARTVANRIAEELETELGG-CVGYKVRFN 157 (1295)
T ss_pred HHHHHHHHHC-CEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCC-EEEEEECCC
T ss_conf 9999999979-96999768999878899999996279999989977965999999999999981999899-888894569
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCC--CCCH-HHHHCCEEEEECCCCCCHH
Q ss_conf 444421015554321022103588999999999999854998499827789616--8983-4772257999419811178
Q gi|254780991|r 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG--IGSV-ESYSQMIVQLKIGDSVEQK 306 (805)
Q Consensus 230 ~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfg--l~~P-~~~lglIIvdEehd~~~~~ 306 (805)
|...+ +..|..-|--.+.. ...| +.....||+||.||.+-..
T Consensus 158 ~~~s~-----------------------------------~t~i~~~TdGiLL~e~~~d~~L~~y~~iIiDEaHERsl~~ 202 (1295)
T PRK11131 158 DQVSD-----------------------------------NTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNI 202 (1295)
T ss_pred CCCCC-----------------------------------CCEEEEECCHHHHHHHHHCCCCCCCCEEEEECCCCCCCHH
T ss_conf 88799-----------------------------------9779997656999986209987887779986855688019
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf 75323431176563387754533187247831788877888
Q gi|254780991|r 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 (805)
Q Consensus 307 ~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~ 347 (805)
++ -++|-+. +...| ..--+|+-|||...|.+.
T Consensus 203 D~-----LLg~Lk~-ll~~R---~dLKvIimSATid~e~fs 234 (1295)
T PRK11131 203 DF-----ILGYLKE-LLPRR---PDLKVIITSATIDPERFS 234 (1295)
T ss_pred HH-----HHHHHHH-HHHHC---CCCEEEEECCCCCHHHHH
T ss_conf 99-----9999999-98339---998899955868979999
No 86
>KOG0387 consensus
Probab=99.27 E-value=8.1e-08 Score=77.10 Aligned_cols=432 Identities=17% Similarity=0.140 Sum_probs=243.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH------HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 438999999998873973379986337646999999999------71997899931634689999999986789838998
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE------AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~------~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f 225 (805)
-|++-++=|.+--.++ .-=.|--=-|=|||--.+.-++ .+-+||||+.| .++-+|-..+|..++|.-+|.++
T Consensus 209 yQreGV~WL~~L~~q~-~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP-~Tii~qW~~E~~~w~p~~rv~il 286 (923)
T KOG0387 209 YQREGVQWLWELYCQR-AGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCP-ATIIHQWMKEFQTWWPPFRVFIL 286 (923)
T ss_pred HHHHHHHHHHHHHHCC-CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECC-HHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 8898899999997325-787620123576401589999987502432586599824-88999999999874765379997
Q ss_pred EECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCC----CEEEECCHHHHCCCCCHHHH--HCCEEEEEC
Q ss_conf 621344442101555432102210358899999999999985499----84998277896168983477--225799941
Q gi|254780991|r 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN----DCIVVSSVSCIYGIGSVESY--SQMIVQLKI 299 (805)
Q Consensus 226 ~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~----~~IVVgsrSAIfgl~~P~~~--lglIIvdEe 299 (805)
|+.-++...++|. +++ -|-.++.+. .-|.|.|-+-++-.+.++.. -+..|.||-
T Consensus 287 h~t~s~~r~~~~~----------~~~----------~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEG 346 (923)
T KOG0387 287 HGTGSGARYDASH----------SSH----------KKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEG 346 (923)
T ss_pred ECCCCCCCCCCCH----------HHH----------HHHHHHEEEECCCCCEEEEEHHHHCCCCCCCCCCCCCEEEECCC
T ss_conf 1477654444310----------134----------43122203530468479974224200475234650347982376
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCC
Q ss_conf 98111787532343117656338775453318724783178887788873104442002221016664001110000100
Q gi|254780991|r 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 (805)
Q Consensus 300 hd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i 379 (805)
|-- +-.-..+...--++.-..-|+=+-||-. +++.=+....+-+. |-...++..+..-+.
T Consensus 347 H~I-------------rNpns~islackki~T~~RiILSGTPiQ----NnL~ELwsLfDFv~---PG~Lgt~~~F~~~f~ 406 (923)
T KOG0387 347 HRI-------------RNPNSKISLACKKIRTVHRIILSGTPIQ----NNLTELWSLFDFVF---PGKLGTLPVFQQNFE 406 (923)
T ss_pred CCC-------------CCCCCHHHHHHHHCCCCCEEEEECCCCC----CHHHHHHHHHHHCC---CCCCCCHHHHHHHHH
T ss_conf 504-------------6985089999986156664886186210----10899987766406---774455177876301
Q ss_pred HH---HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHCCCCCC----CCHHH
Q ss_conf 00---000025636788754558998998998875443321100124444777753------321120145----10113
Q gi|254780991|r 380 YA---NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM------LETTGSCQS----IENYS 446 (805)
Q Consensus 380 ~P---a~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~------l~e~G~~~g----ienyS 446 (805)
.| ......+......|-.-.. ..+....-.+.+|+..+.-+ -+.+.||.- ++-|-
T Consensus 407 ~pI~~GgyaNAs~~qv~~aykca~------------~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~ 474 (923)
T KOG0387 407 HPINRGGYANASPRQVQTAYKCAV------------ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQ 474 (923)
T ss_pred HHEECCCCCCCCHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHH
T ss_conf 110035657898799999999999------------99987679999999988644217886525899856699999999
Q ss_pred HHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 33114465556202330265442132101234475445432456541333235766554443222111010012155545
Q gi|254780991|r 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526 (805)
Q Consensus 447 ~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~ 526 (805)
.++... ...++++--+ . +-+|...-...||+|..+..-.+..++
T Consensus 475 ~fl~s~----~v~~i~ng~~-----------------~-------------~l~Gi~iLrkICnHPdll~~~~~~~~~-- 518 (923)
T KOG0387 475 RFLNSS----EVNKILNGKR-----------------N-------------CLSGIDILRKICNHPDLLDRRDEDEKQ-- 518 (923)
T ss_pred HHHHHH----HHHHHHCCCC-----------------C-------------CEECHHHHHHHCCCCCCCCCCCCCCCC--
T ss_conf 986059----8999974984-----------------4-------------121518888645894102676421235--
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH-HC
Q ss_conf 44468675420132200234320124467720000133101688999999863023212466214789999999986-35
Q gi|254780991|r 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY-ER 605 (805)
Q Consensus 527 ~~satPg~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~-~~ 605 (805)
.|-. -.+| .-.+.+.-+..-+..+...|.|++.|+-|.+|-+-|-.+|. ..
T Consensus 519 ----~~D~-------------------~g~~-----k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~ 570 (923)
T KOG0387 519 ----GPDY-------------------EGDP-----KRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAK 570 (923)
T ss_pred ----CCCC-------------------CCCH-----HHCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCC
T ss_conf ----8876-------------------7895-----65216999999999986179779984137799999999987347
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCC-C-EEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CC
Q ss_conf 9668732576457899999999731898-6-9998458753578777117999628856744460137766543127-99
Q gi|254780991|r 606 NIRVRYMHSEVKTLERIEIIRDLRLGKF-D-VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NV 682 (805)
Q Consensus 606 ~i~~~~~h~~~~~~~r~~il~~~~~g~~-d-iLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~ 682 (805)
|+...-|||......|..++.+|..++. + .|+.|.+=.=|+.+-.-.-|+|+|.|= ++.+=.|.--||=| |.
T Consensus 571 ~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdW-----NPStD~QAreRawRiGQ 645 (923)
T KOG0387 571 GYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDW-----NPSTDNQARERAWRIGQ 645 (923)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCC-----CCCCCHHHHHHHHHHCC
T ss_conf 8538971588862010578986367874579999730355411245675589979999-----97642578888886357
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 8669998248988999999987888888
Q gi|254780991|r 683 NSKVILYADTITKSIQLAIDETTRRREK 710 (805)
Q Consensus 683 ~G~~il~ad~~t~~~~~ai~e~~rrr~~ 710 (805)
.-.|+.| ..+|.. .|+|--+.|.+
T Consensus 646 kkdV~VY-RL~t~g---TIEEkiY~rQI 669 (923)
T KOG0387 646 KKDVVVY-RLMTAG---TIEEKIYHRQI 669 (923)
T ss_pred CCCEEEE-EEECCC---CHHHHHHHHHH
T ss_conf 4655999-973277---18999999999
No 87
>KOG0951 consensus
Probab=99.21 E-value=1.4e-08 Score=82.72 Aligned_cols=94 Identities=23% Similarity=0.358 Sum_probs=70.7
Q ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEE----EECCCCCCC-CCCHHH
Q ss_conf 999999863596687325764578999999997318986999845875357877711799----962885674-446013
Q gi|254780991|r 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA----ILDADKEGF-LRSKTS 670 (805)
Q Consensus 596 e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~----i~dAD~~~f-~~~~~~ 670 (805)
.+|.+.|| +...-.|.+++..+|.-.-+-|+.|+++|||-|--+|.|...|.-|..+ ++|+++.-. ..+...
T Consensus 600 ~dLkdLLp---ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~d 676 (1674)
T KOG0951 600 PDLKDLLP---YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLD 676 (1674)
T ss_pred HHHHHHHH---CCCEEECCCCCCCHHHHHHHHHHCCCEEEEEEEHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHH
T ss_conf 30787731---351331167786237789998744862688750245642477762689607621583457666278799
Q ss_pred HHHHHHHHCC-CCC--CEEEEEECC
Q ss_conf 7766543127-998--669998248
Q gi|254780991|r 671 LIQTIGRAAR-NVN--SKVILYADT 692 (805)
Q Consensus 671 ~~q~~GRagR-~~~--G~~il~ad~ 692 (805)
.+|..||||| .-+ |..|+-++.
T Consensus 677 v~qmlgragrp~~D~~gegiiit~~ 701 (1674)
T KOG0951 677 VMQMLGRAGRPQYDTCGEGIIITDH 701 (1674)
T ss_pred HHHHHHHCCCCCCCCCCCEEECCCC
T ss_conf 9999754489764767864550470
No 88
>KOG0349 consensus
Probab=99.20 E-value=6.5e-11 Score=100.30 Aligned_cols=113 Identities=18% Similarity=0.260 Sum_probs=100.2
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHCC---CEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCE
Q ss_conf 863023212466214789999999986359---66873257645789999999973189869998458753578777117
Q gi|254780991|r 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERN---IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653 (805)
Q Consensus 577 ~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~---i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~l 653 (805)
.+..+..+..+++.||...++|-++|...| +.+.-+|+|++..+|.+-|+.|+++.+..||-|+++|+||||.++.+
T Consensus 500 i~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~ 579 (725)
T KOG0349 500 IRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPF 579 (725)
T ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEEHHHHCCCCCCCCCE
T ss_conf 55534674599970356616799999872786403688824788267788787665257279997104435665427725
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCC
Q ss_conf 999628856744460137766543127-99866999824898
Q gi|254780991|r 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTIT 694 (805)
Q Consensus 654 V~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t 694 (805)
++|+- +|-+.+.|+|+|||.|| .+-|-+|..+..+-
T Consensus 580 ~invt-----lpd~k~nyvhrigrvgraermglaislvat~~ 616 (725)
T KOG0349 580 MINVT-----LPDDKTNYVHRIGRVGRAERMGLAISLVATVP 616 (725)
T ss_pred EEEEE-----CCCCCCHHHHHHHCCCHHHHCCEEEEEEECCC
T ss_conf 99985-----58654115456402014544050477764165
No 89
>KOG0353 consensus
Probab=99.16 E-value=1.9e-08 Score=81.76 Aligned_cols=146 Identities=16% Similarity=0.215 Sum_probs=114.1
Q ss_pred CCHHHHHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHH
Q ss_conf 10168899999986302---321246621478999999998635966873257645789999999973189869998458
Q gi|254780991|r 565 RTQVEDVYDEINLAAQQ---GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641 (805)
Q Consensus 565 ~~qvddl~~ei~~~~~~---~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~ 641 (805)
-+..||.+++|.+.+.. |+--++.+..++..|.++..|.+.||.+-..|..+....+.-.-+..-.|++.|+|+|--
T Consensus 297 p~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatva 376 (695)
T KOG0353 297 PGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVA 376 (695)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 99757789999998544437876569995346589999999855835221405568534454000330460689999864
Q ss_pred HHCCCCCCCCCEEEEECCCCCCCCCCHHHHHH-------------------------------------------HHHHH
Q ss_conf 75357877711799962885674446013776-------------------------------------------65431
Q gi|254780991|r 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQ-------------------------------------------TIGRA 678 (805)
Q Consensus 642 ~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q-------------------------------------------~~GRa 678 (805)
...|+|-|+|.+|+.-. ++.|.+.|.| -.|||
T Consensus 377 fgmgidkpdvrfvihhs-----l~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgra 451 (695)
T KOG0353 377 FGMGIDKPDVRFVIHHS-----LPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRA 451 (695)
T ss_pred ECCCCCCCCEEEEEECC-----CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHCCCEEEEEEECCHHCCCC
T ss_conf 02567888716999536-----6166899998878999987652255567875300043340131012222031102555
Q ss_pred CC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 27-998669998248988999999987888888887688
Q gi|254780991|r 679 AR-NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716 (805)
Q Consensus 679 gR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~q~~~n~ 716 (805)
|| +.+..+|||+..-+-.-+..|-..+ +..+|..|+.
T Consensus 452 grd~~~a~cilyy~~~difk~ssmv~~e-~~g~q~ly~m 489 (695)
T KOG0353 452 GRDDMKADCILYYGFADIFKISSMVQME-NTGIQKLYEM 489 (695)
T ss_pred CCCCCCCCEEEEECHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 6688866479984247787677788788-6658999999
No 90
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.15 E-value=5.2e-10 Score=93.49 Aligned_cols=133 Identities=20% Similarity=0.151 Sum_probs=91.9
Q ss_pred EEEEEEECCCCHHHHHHHHHHH-----CCCCEEEEECCHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 3799863376469999999997-----1997899931634689999999986789-838998621344442101555432
Q gi|254780991|r 170 VQLLLGVTGSGKTFTMAKVIEA-----MQRPAIVMAPNKILAAQLYSEFKNFFPH-NAVEYFVSYYDYYQPEAYVPRTDT 243 (805)
Q Consensus 170 ~qlL~GVTGSGKTevya~lI~~-----~gr~aLvLvPei~La~QL~~rfk~~Fp~-n~V~~f~S~~~~yqpEay~p~~d~ 243 (805)
..++.+-||||||++|+-.+-+ .++.+||++|...|+.|++++|+.+++. ..|.++++..+..
T Consensus 2 ~~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~----------- 70 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIK----------- 70 (144)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH-----------
T ss_conf 999988997179999999999999756897699974679999999999999748871799996136367-----------
Q ss_pred CHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCC----CHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf 102210358899999999999985499849982778961689----8347722579994198111787532343117656
Q gi|254780991|r 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG----SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 (805)
Q Consensus 244 ~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~----~P~~~lglIIvdEehd~~~~~~~~~~l~~~~Y~R 319 (805)
.+.....+...|+|+|...+.... ....+.+++|+||.|.-.+.. |..
T Consensus 71 ------------------~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~----------~~~ 122 (144)
T cd00046 71 ------------------QQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQG----------FGL 122 (144)
T ss_pred ------------------HHHHHHCCCCCEEECCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCC----------CHH
T ss_conf ------------------7898745898499828899999997387655510099998888764379----------699
Q ss_pred CHHHHHHHHHCCCCEEEECCCC
Q ss_conf 3387754533187247831788
Q gi|254780991|r 320 QDIGIIRGTFRVCGDSIEIFPS 341 (805)
Q Consensus 320 ~D~a~~RG~f~~rg~ILdsatp 341 (805)
.-..........+..++=||||
T Consensus 123 ~~~~~~~~~~~~~~~l~lSATp 144 (144)
T cd00046 123 LGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHHHHHCCCCCCEEEECCCC
T ss_conf 9999999679999489982899
No 91
>KOG0948 consensus
Probab=99.15 E-value=1.4e-08 Score=82.86 Aligned_cols=115 Identities=23% Similarity=0.288 Sum_probs=79.5
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 754775188888843899999999887397337998633764699999999971---99789993163468999999998
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKN 215 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rfk~ 215 (805)
-||.|..= |..||.-| +++ ...|.-.-|.+|||.|--=+|+.. ..-+++-.|=++|..|-|.+|.+
T Consensus 126 YPF~LDpF------Q~~aI~Ci----dr~-eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~ 194 (1041)
T KOG0948 126 YPFTLDPF------QSTAIKCI----DRG-ESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLE 194 (1041)
T ss_pred CCCCCCCH------HHHHHHHH----CCC-CEEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEECHHHHHCCHHHHHHHH
T ss_conf 88434806------76545311----279-63899840578852379999999987648589607315541154899998
Q ss_pred HCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECC---HHHHCCCCCHHHHHC
Q ss_conf 67898389986213444421015554321022103588999999999999854998499827---789616898347722
Q gi|254780991|r 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS---VSCIYGIGSVESYSQ 292 (805)
Q Consensus 216 ~Fp~n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgs---rSAIfgl~~P~~~lg 292 (805)
-|+| |.+.-. |..||+ .-.+.|..| ||-+|.-.-...-.+
T Consensus 195 EF~D--VGLMTG--------------------DVTInP---------------~ASCLVMTTEILRsMLYRGSEvmrEVa 237 (1041)
T KOG0948 195 EFKD--VGLMTG--------------------DVTINP---------------DASCLVMTTEILRSMLYRGSEVMREVA 237 (1041)
T ss_pred HHCC--CCEEEC--------------------CEEECC---------------CCCEEEEHHHHHHHHHHCCCHHHHEEE
T ss_conf 8463--652305--------------------446689---------------875453379999998743316755231
Q ss_pred CEEEEECCC
Q ss_conf 579994198
Q gi|254780991|r 293 MIVQLKIGD 301 (805)
Q Consensus 293 lIIvdEehd 301 (805)
++|.||.|=
T Consensus 238 WVIFDEIHY 246 (1041)
T KOG0948 238 WVIFDEIHY 246 (1041)
T ss_pred EEEEEEEHH
T ss_conf 488620010
No 92
>KOG0947 consensus
Probab=99.11 E-value=2.1e-08 Score=81.43 Aligned_cols=404 Identities=18% Similarity=0.199 Sum_probs=186.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 751888888438999999998873973379986337646999999999---71997899931634689999999986789
Q gi|254780991|r 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 143 l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
+.-+|+|--=|.+||-.|.. |. ....---|.||||.|-=-+|+ ..+..+++-+|=++|..|=+.+||+-|+|
T Consensus 292 ~~~pFelD~FQk~Ai~~ler----g~-SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947 292 LIYPFELDTFQKEAIYHLER----GD-SVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred HHCCCCCCHHHHHHHHHHHC----CC-EEEEEECCCCCCCHHHHHHHHHHHHHCCCEEECCHHHHHCCCHHHHHHHHCCC
T ss_conf 61887766789999999972----78-17997137788436999999998863551575263465400157888774266
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECC----HHHHCCCCCHHHHHCCEE
Q ss_conf 8389986213444421015554321022103588999999999999854998499827----789616898347722579
Q gi|254780991|r 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS----VSCIYGIGSVESYSQMIV 295 (805)
Q Consensus 220 n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgs----rSAIfgl~~P~~~lglII 295 (805)
-- + +--|.++|. ++.++|=| ||-+|.-..-...+..+|
T Consensus 367 vg--L--------------------lTGDvqinP----------------eAsCLIMTTEILRsMLYrgadliRDvE~VI 408 (1248)
T KOG0947 367 VG--L--------------------LTGDVQINP----------------EASCLIMTTEILRSMLYRGADLIRDVEFVI 408 (1248)
T ss_pred CC--E--------------------EECCEEECC----------------CCCEEEEHHHHHHHHHHCCCCHHHCCCEEE
T ss_conf 65--4--------------------514433277----------------754676569999998751554321133698
Q ss_pred EEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCC-C-HH--HHHHHHCCCCCCHHHHHCCCCCCCCHH
Q ss_conf 9941981117875323431176563387754533187247831788-8-77--888731044420022210166640011
Q gi|254780991|r 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS-H-LE--DVAWRVSMFGNDIEEISEFYPLTGQKI 371 (805)
Q Consensus 296 vdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatp-s-~E--s~~~Rie~f~deIe~I~~fDplT~~~~ 371 (805)
.||+|=-.+. ..|.-=.++.++-- +..-.|+=|||- . .| +|--|+. +..|--| .|.+
T Consensus 409 FDEVHYiND~--------eRGvVWEEViIMlP--~HV~~IlLSATVPN~~EFA~WIGRtK--~K~IyVi-----ST~k-- 469 (1248)
T KOG0947 409 FDEVHYINDV--------ERGVVWEEVIIMLP--RHVNFILLSATVPNTLEFADWIGRTK--QKTIYVI-----STSK-- 469 (1248)
T ss_pred EEEEEECCCC--------CCCCCCEEEEEECC--CCCEEEEEECCCCCHHHHHHHHHHCC--CCEEEEE-----ECCC--
T ss_conf 7403541441--------35622101225325--54159998465798188888750404--8538997-----1478--
Q ss_pred HHCCCCCCHHHHHCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHCCCCCCCCH
Q ss_conf 100001000000002563678875455----8998998998875443321100124-4--44777753321120145101
Q gi|254780991|r 372 RNVETIKIYANSHYVTPRPTLNTAMKY----IKEELKMRLIELEKEGRLLEAQRLE-Q--RITYDLEMLETTGSCQSIEN 444 (805)
Q Consensus 372 ~~~~~~~i~Pa~~~v~~~e~l~~a~~~----i~~el~~rl~~~~~~~~~~ea~rL~-q--R~~~dle~l~e~G~~~gien 444 (805)
...|-.||......+-..+.+ +......--..+.+..+......-. + |+.+. ......+-.|
T Consensus 470 ------RPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~--~ggk~~~~~g--- 538 (1248)
T KOG0947 470 ------RPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQK--RGGKTNYHNG--- 538 (1248)
T ss_pred ------CCCCEEEEEEECCCEEHHHCCCCHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC---
T ss_conf ------86430789986663100015441435530101111222444433132544546665546--6776788888---
Q ss_pred HHHH-HCCCCCCCC--CHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 1333-114465556--2023302654421321012344754454324565413332357665544432221110100121
Q gi|254780991|r 445 YSRY-LTGRNPGEP--PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521 (805)
Q Consensus 445 yS~~-L~~r~~ge~--P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~ 521 (805)
+|++ -.+..-+.+ -..++.|+.+. ..+|-+.-|+ +||
T Consensus 539 ~~r~~~~~~nrr~~~~~l~lin~L~k~---------~lLP~VvFvF----Skk--------------------------- 578 (1248)
T KOG0947 539 GSRGSGIGKNRRKQPTWLDLINHLRKK---------NLLPVVVFVF----SKK--------------------------- 578 (1248)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHC---------CCCCEEEEEE----CCC---------------------------
T ss_conf 766666543234444099999998522---------4676699997----356---------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 55545444686754201322002343201244677200001331016889999998630232124662147899999999
Q gi|254780991|r 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601 (805)
Q Consensus 522 ~~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~ 601 (805)
.|+. .-|..+.+.+.+. .-..+|.-.++....+-....|-|--+++. .+
T Consensus 579 --------------rCde-----~a~~L~~~nL~~~-----~EKseV~lfl~k~~~rLk~~DR~LPQvl~m--~~----- 627 (1248)
T KOG0947 579 --------------RCDE-----YADYLTNLNLTDS-----KEKSEVHLFLSKAVARLKGEDRNLPQVLSM--RS----- 627 (1248)
T ss_pred --------------CHHH-----HHHHHHCCCCCCC-----HHHHHHHHHHHHHHHHCCHHHCCCHHHHHH--HH-----
T ss_conf --------------5789-----9999755576652-----127899999999998668543143377889--99-----
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEEC--CCCCCCCC-CHHHHHHHHHHH
Q ss_conf 863596687325764578999999997318986999845875357877711799962--88567444-601377665431
Q gi|254780991|r 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR-SKTSLIQTIGRA 678 (805)
Q Consensus 602 ~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~d--AD~~~f~~-~~~~~~q~~GRa 678 (805)
+-.+||.+ .|+.+=..-.+-|---|..|-+.||.+|--.|.|+..|-=|.|.--- -|-..|+. ..--|+|.+|||
T Consensus 628 ll~RGiaV--HH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRA 705 (1248)
T KOG0947 628 LLLRGIAV--HHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRA 705 (1248)
T ss_pred HHHHCCHH--HCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCEEEEEEEHHHCCCCCEEECCCHHHHHHHCCC
T ss_conf 98614033--0366307899999999755854788641056511688740677330001368642543870577641102
Q ss_pred CC-CCC--CEEEEEECC
Q ss_conf 27-998--669998248
Q gi|254780991|r 679 AR-NVN--SKVILYADT 692 (805)
Q Consensus 679 gR-~~~--G~~il~ad~ 692 (805)
|| |-+ |.||+....
T Consensus 706 GRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947 706 GRRGLDETGTVIIMCKD 722 (1248)
T ss_pred CCCCCCCCCEEEEEECC
T ss_conf 44566867608999668
No 93
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.10 E-value=8.7e-07 Score=69.38 Aligned_cols=125 Identities=19% Similarity=0.239 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH----CCCCCEEEEHHH
Q ss_conf 0168899999986302321246621478999999998635966873257645789999999973----189869998458
Q gi|254780991|r 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR----LGKFDVLVGINL 641 (805)
Q Consensus 566 ~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~----~g~~diLvgt~~ 641 (805)
...+.+...|.+.+....-+||.-...++-+.+.+.+....-......++ ..|.++|+.|+ .|+-.||+||+=
T Consensus 518 ~~~~~~~~~i~~~~~~~~g~LVLFtS~~~l~~v~~~l~~~~~~~ll~Qg~---~~r~~ll~~f~~~~~~~~~svLlGt~S 594 (697)
T PRK11747 518 AHTAEMAAYLPELLEGHKGSLVLFSSRRQMQKVADLLPGDLRLLLLVQGE---QPRQELLEKHKKRVDEGEGSVLFGLQS 594 (697)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCCEEEECC---CCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999999999999856984999501999999999876634883899568---659999999999861689829996753
Q ss_pred HHCCCCCCCC--CEEEEECCC--CCCCCC--------------CHH---------HHHHHHHHHCCCC--CCEEEEEECC
Q ss_conf 7535787771--179996288--567444--------------601---------3776654312799--8669998248
Q gi|254780991|r 642 LREGLDIPEC--GLVAILDAD--KEGFLR--------------SKT---------SLIQTIGRAARNV--NSKVILYADT 692 (805)
Q Consensus 642 ~akGlD~p~v--~lV~i~dAD--~~~f~~--------------~~~---------~~~q~~GRagR~~--~G~~il~ad~ 692 (805)
.-+|+|||+= ++|+|.-.- .|+-|- .+. -+-|-+||-=|.. .|.+++.=.+
T Consensus 595 FwEGVD~pG~~L~~VII~kLPF~~P~dP~~~ar~~~~~~~g~n~F~~~~lP~A~lklkQg~GRLIRs~~DrGvvvilD~R 674 (697)
T PRK11747 595 FAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLESRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred CCCCEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCC
T ss_conf 12661369878789999748999998599999999999837995165129999999999701461678862899997688
Q ss_pred C
Q ss_conf 9
Q gi|254780991|r 693 I 693 (805)
Q Consensus 693 ~ 693 (805)
+
T Consensus 675 l 675 (697)
T PRK11747 675 L 675 (697)
T ss_pred C
T ss_conf 6
No 94
>KOG0329 consensus
Probab=99.09 E-value=1.9e-09 Score=89.36 Aligned_cols=166 Identities=23% Similarity=0.204 Sum_probs=102.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH----HHHHHC--CCCEEEEECCHHHHHHH---HHHHHHHCCC
Q ss_conf 88843899999999887397337998633764699999----999971--99789993163468999---9999986789
Q gi|254780991|r 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA----KVIEAM--QRPAIVMAPNKILAAQL---YSEFKNFFPH 219 (805)
Q Consensus 149 P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya----~lI~~~--gr~aLvLvPei~La~QL---~~rfk~~Fp~ 219 (805)
|+.-|.+.|-+-.- |. ..+-..-.|-|||.|+. +-|+-+ .-++||+.|.--||-|+ |.||..+.|+
T Consensus 65 psevqhecipqail----gm-dvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~ 139 (387)
T KOG0329 65 PSEVQHECIPQAIL----GM-DVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPS 139 (387)
T ss_pred CHHHHHHHHHHHHH----CC-HHHEECCCCCCCEEEEEHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCC
T ss_conf 16764420047763----41-12010025788436552223552378898079999962189999988999999754888
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCC----CCHHHHHCCEE
Q ss_conf 83899862134444210155543210221035889999999999998549984998277896168----98347722579
Q gi|254780991|r 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI----GSVESYSQMIV 295 (805)
Q Consensus 220 n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl----~~P~~~lglII 295 (805)
-.|.+|-....... |.+. +..-+.|||||.--|..+ -.-+++....+
T Consensus 140 vkvaVFfGG~~Ikk----------------------dee~-------lk~~PhivVgTPGrilALvr~k~l~lk~vkhFv 190 (387)
T KOG0329 140 VKVSVFFGGLFIKK----------------------DEEL-------LKNCPHIVVGTPGRILALVRNRSLNLKNVKHFV 190 (387)
T ss_pred CEEEEEECCEECCC----------------------CHHH-------HHCCCEEEECCCHHHHHHHHHCCCCHHHCCEEE
T ss_conf 45899975531034----------------------6998-------827990897682889999872457532032112
Q ss_pred EEECCCCCCHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHH
Q ss_conf 994198111787532343117656338-775453318724783178887788873104442002
Q gi|254780991|r 296 QLKIGDSVEQKELLSSLVKQQYKRQDI-GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358 (805)
Q Consensus 296 vdEehd~~~~~~~~~~l~~~~Y~R~D~-a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe 358 (805)
.||..- ...++. -|+|+ .+.|.+=...-+..-|+|.|-|-.|....|--|.+|
T Consensus 191 lDEcdk------mle~lD----MrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmE 244 (387)
T KOG0329 191 LDECDK------MLEQLD----MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPME 244 (387)
T ss_pred HHHHHH------HHHHHH----HHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHCCCHH
T ss_conf 333778------999878----888799986328653203454201315667887755218166
No 95
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.07 E-value=3.4e-07 Score=72.44 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=71.6
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEE--ECCCCCCCCC-CHHHHHHHHHHHCC
Q ss_conf 35966873257645789999999973189869998458753578777117999--6288567444-60137766543127
Q gi|254780991|r 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI--LDADKEGFLR-SKTSLIQTIGRAAR 680 (805)
Q Consensus 604 ~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i--~dAD~~~f~~-~~~~~~q~~GRagR 680 (805)
.+||. ..|+.+=..-+..+=.-|..|.+.|+.+|-.++-|+..|-=|.|.- --=|-.+|+. +..-|+|.+|||||
T Consensus 444 ~RGia--vHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGR 521 (1041)
T COG4581 444 LRGIA--VHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGR 521 (1041)
T ss_pred HHHHH--HHCCCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCEEEEEEEEECCCCEEECCHHHHHHHHHHHCC
T ss_conf 60345--4024503689999999986043057753334640157840013546557754885356581577775444301
Q ss_pred -CCC--CEEEEEEC-CCC-HHHHHHH
Q ss_conf -998--66999824-898-8999999
Q gi|254780991|r 681 -NVN--SKVILYAD-TIT-KSIQLAI 701 (805)
Q Consensus 681 -~~~--G~~il~ad-~~t-~~~~~ai 701 (805)
|.+ |.||+... ... ++....+
T Consensus 522 RGlD~~G~vI~~~~~~~~~~~e~~~l 547 (1041)
T COG4581 522 RGLDVLGTVIVIEPPFESEPSEAAGL 547 (1041)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 55654654999557887872777776
No 96
>COG4889 Predicted helicase [General function prediction only]
Probab=99.05 E-value=1.2e-08 Score=83.38 Aligned_cols=111 Identities=21% Similarity=0.372 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH---HHHCCCCCEEEEHHH
Q ss_conf 10168899999986302321246621478999999998635966873257645789999999---973189869998458
Q gi|254780991|r 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR---DLRLGKFDVLVGINL 641 (805)
Q Consensus 565 ~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~---~~~~g~~diLvgt~~ 641 (805)
..|+.+.++.|.++- -+||.+-+++..+.+.-.||+++..+|.+.+. .|...++.||--.-.
T Consensus 473 SK~i~~sFe~Vve~Y---------------~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRc 537 (1518)
T COG4889 473 SKQIAESFETVVEAY---------------DEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARC 537 (1518)
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHEEECCCHH
T ss_conf 887888889999999---------------99997326683688751467300888877886158899421011013315
Q ss_pred HHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC----CEEEEEECCCCH
Q ss_conf 753578777117999628856744460137766543127998----669998248988
Q gi|254780991|r 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN----SKVILYADTITK 695 (805)
Q Consensus 642 ~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~~~----G~~il~ad~~t~ 695 (805)
|.+|.|+|-+.-|+-+| -+.|--..||-+||..|..+ |-.||=.-.+++
T Consensus 538 LSEGVDVPaLDsViFf~-----pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpeg 590 (1518)
T COG4889 538 LSEGVDVPALDSVIFFD-----PRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEG 590 (1518)
T ss_pred HHCCCCCCCCCEEEEEC-----CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 42378853412379866-----851288999999999872768766569987315877
No 97
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.04 E-value=3.9e-07 Score=72.01 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHCCCE-EEECCCCCCHHHHHHHHHHHHCCCC-CEEEEHHHH
Q ss_conf 016889999998630232-1246621478999999998635966-8732576457899999999731898-699984587
Q gi|254780991|r 566 TQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKF-DVLVGINLL 642 (805)
Q Consensus 566 ~qvddl~~ei~~~~~~~~-R~l~~~~tkr~~e~l~~~~~~~~i~-~~~~h~~~~~~~r~~il~~~~~g~~-diLvgt~~~ 642 (805)
.-..++...|........ +++|+....++.+.+.++|...... ....++ ...+.++++.|+.+.- -+||||.-+
T Consensus 462 ~~~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~---~~~~~~~l~~f~~~~~~~~lv~~gsf 538 (654)
T COG1199 462 ELLAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQG---EDEREELLEKFKASGEGLILVGGGSF 538 (654)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEECCC---CCCHHHHHHHHHHCCCCEEEEEECCE
T ss_conf 799999999999997479988999178999999999865116453344568---78469999999714786499972331
Q ss_pred HCCCCCCCCCEEEEECCCCCCCCC----------------------------CHHHHHHHHHHHCCCC--CCEEEEEECC
Q ss_conf 535787771179996288567444----------------------------6013776654312799--8669998248
Q gi|254780991|r 643 REGLDIPECGLVAILDADKEGFLR----------------------------SKTSLIQTIGRAARNV--NSKVILYADT 692 (805)
Q Consensus 643 akGlD~p~v~lV~i~dAD~~~f~~----------------------------~~~~~~q~~GRagR~~--~G~~il~ad~ 692 (805)
++|+|||+=.+.+++=+-.| ||. .-..+.|-+||.=|+. .|.+++.=++
T Consensus 539 ~EGVD~~g~~l~~vvI~~lP-fp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 539 WEGVDFPGDALRLVVIVGLP-FPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred ECCEECCCCCEEEEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC
T ss_conf 03151688765799998268-99899899999999998726997103458999999998743010478871699997153
No 98
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=99.01 E-value=5.9e-09 Score=85.59 Aligned_cols=147 Identities=22% Similarity=0.190 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHH-H---H--CCCCEEEEECCHHHHHHHHHHHHHHCCCCE--EE
Q ss_conf 43899999999887397337998633764699999999-9---7--199789993163468999999998678983--89
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI-E---A--MQRPAIVMAPNKILAAQLYSEFKNFFPHNA--VE 223 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI-~---~--~gr~aLvLvPei~La~QL~~rfk~~Fp~n~--V~ 223 (805)
-|.+||..+.+ | +..++.+-||||||++|+-.+ . + .+..+++++|.++|+.|.+.+|+.+|.... +.
T Consensus 3 ~Q~~~i~~~~~----g-~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~~~~ 77 (167)
T pfam00270 3 IQAEAIPAILE----G-KDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIYEELKKLGKYLGLKVA 77 (167)
T ss_pred HHHHHHHHHHC----C-CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 59999999976----9-978998899975899999999999874778987999906088888999886432102676404
Q ss_pred EEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCC----CCHHHHHCCEEEEEC
Q ss_conf 9862134444210155543210221035889999999999998549984998277896168----983477225799941
Q gi|254780991|r 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI----GSVESYSQMIVQLKI 299 (805)
Q Consensus 224 ~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl----~~P~~~lglIIvdEe 299 (805)
.+++..+ ...+. .. ......|+|+|...+... ..-+.+++++|+||.
T Consensus 78 ~~~g~~~-------------------------~~~~~---~~-~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lIvDE~ 128 (167)
T pfam00270 78 LLYGGDS-------------------------PKEQL---RK-LKKGPDILVGTPGRLLDLLERGGLLLKNLKLLVLDEA 128 (167)
T ss_pred EECCCCC-------------------------HHHHH---HH-HCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECH
T ss_conf 6417861-------------------------78898---76-4057707994789999999803312110038998808
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 9811178753234311765633877545331872478317888
Q gi|254780991|r 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342 (805)
Q Consensus 300 hd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps 342 (805)
|.-.+. ..++.-. .+.+.-...+..++=|||+.
T Consensus 129 H~~~~~--------~~g~~~~--~il~~l~~~~q~v~~SAT~~ 161 (167)
T pfam00270 129 HRLLDQ--------GFGDDLE--EILRRLPPKRQILLLSATLP 161 (167)
T ss_pred HHHHCC--------CHHHHHH--HHHHHCCCCCCEEEEECCCC
T ss_conf 867335--------8299999--99985799997899972699
No 99
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.87 E-value=1.1e-07 Score=76.16 Aligned_cols=86 Identities=24% Similarity=0.274 Sum_probs=65.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEE--------ECCCC-----CCCCCCHHHH
Q ss_conf 5966873257645789999999973189869998458753578777117999--------62885-----6744460137
Q gi|254780991|r 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI--------LDADK-----EGFLRSKTSL 671 (805)
Q Consensus 605 ~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i--------~dAD~-----~~f~~~~~~~ 671 (805)
..+.+.-+|+.+...+..++++--..|.=.|+++||++.-+|-||+|..|+= ||.-. +-=+-|--|-
T Consensus 286 ~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA 365 (845)
T COG1643 286 DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASA 365 (845)
T ss_pred CCCEEEECCCCCCHHHHHHHCCCCCCCCCEEEEECCEEECCEEECCEEEEEECCCCCCCCCCCCCCCEEEEEEEECHHHH
T ss_conf 88389404035998999866287888860499975140013115785899848825210035134852666787505323
Q ss_pred HHHHHHHCCCCCCEEE-EEE
Q ss_conf 7665431279986699-982
Q gi|254780991|r 672 IQTIGRAARNVNSKVI-LYA 690 (805)
Q Consensus 672 ~q~~GRagR~~~G~~i-l~a 690 (805)
.||+|||||-.+|.++ ||.
T Consensus 366 ~QRaGRAGR~~pGicyRLys 385 (845)
T COG1643 366 DQRAGRAGRTGPGICYRLYS 385 (845)
T ss_pred HHHCCCCCCCCCCEEEEECC
T ss_conf 34345545777852899447
No 100
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.87 E-value=1.9e-05 Score=59.32 Aligned_cols=121 Identities=21% Similarity=0.254 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCC
Q ss_conf 88999999863023212466214789999999986359668732576457899999999731898699984587535787
Q gi|254780991|r 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648 (805)
Q Consensus 569 ddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~ 648 (805)
+.+...|......+.|+||.-...++-+.+.++|...++....-. ....+.++++.|+.++-.||+||+-..+|+|+
T Consensus 634 ~~la~~i~~l~~~~g~~LVLFTS~~~l~~v~~~L~~~~~~~L~Qg---~~gs~~~l~~rF~~~~~siLlGt~SFWEGVDl 710 (820)
T PRK07246 634 EAIAKRLESLKQEGQPILVLFNSKKHLLAVSDYLDQWQVSHLAQE---KNGTAYNIKKRFDRGEQTILLGLGSFWEGVDF 710 (820)
T ss_pred HHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCEEEEC---CCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 999999999997499999995309999999999853799778867---97679999999984899699976676466448
Q ss_pred CC--CCEEEEECCC--CCCCC----C----------CHH---------HHHHHHHHHCCCC--CCEEEEEECC
Q ss_conf 77--1179996288--56744----4----------601---------3776654312799--8669998248
Q gi|254780991|r 649 PE--CGLVAILDAD--KEGFL----R----------SKT---------SLIQTIGRAARNV--NSKVILYADT 692 (805)
Q Consensus 649 p~--v~lV~i~dAD--~~~f~----~----------~~~---------~~~q~~GRagR~~--~G~~il~ad~ 692 (805)
|+ .++|+|.-.- .|+-| + .+. .+.|-+||-=|.. .|.++++=.+
T Consensus 711 pG~~L~~vVI~kLPF~~P~dPl~~a~~~~l~~~G~npF~~~~LP~AvlrlkQg~GRLIRs~~DrGvvvIlD~R 783 (820)
T PRK07246 711 IQADRMIEVITRLPFDNPEDPFVKKMSQYLLEEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVIILDRR 783 (820)
T ss_pred CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCC
T ss_conf 9987799998869999998099999999999828995256229999999999570367679986899998886
No 101
>KOG0949 consensus
Probab=98.86 E-value=1.1e-07 Score=76.23 Aligned_cols=97 Identities=21% Similarity=0.226 Sum_probs=72.9
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCC--CEEE
Q ss_conf 3257645789999999973189869998458753578777117999628856744460137766543127-998--6699
Q gi|254780991|r 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVN--SKVI 687 (805)
Q Consensus 611 ~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~--G~~i 687 (805)
+.|+.++...|.-+---||.|...||++|.-++=|+..|--|.|.--|- +--+.=.|-|.+||||| |-+ |.|+
T Consensus 967 ~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs----LQL~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949 967 VHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDS----LQLDPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEHHCCCCCCCEEEEEECCC----CCCCCHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 1124401688879999864485689998211011268874168970352----213714577662403344555556558
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 982489889999999878888888876
Q gi|254780991|r 688 LYADTITKSIQLAIDETTRRREKQLEH 714 (805)
Q Consensus 688 l~ad~~t~~~~~ai~e~~rrr~~q~~~ 714 (805)
+.. -++..+++.+ |.....+|-+|
T Consensus 1043 Fmg-iP~~kv~rLl--ts~L~diqG~~ 1066 (1330)
T KOG0949 1043 FMG-IPRQKVQRLL--TSLLPDIQGAY 1066 (1330)
T ss_pred EEE-CCHHHHHHHH--HHHHHCCCCCC
T ss_conf 872-7599999999--87511015898
No 102
>KOG0920 consensus
Probab=98.86 E-value=8.5e-07 Score=69.45 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=70.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCC---CCCHH----------HH
Q ss_conf 596687325764578999999997318986999845875357877711799962885674---44601----------37
Q gi|254780991|r 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF---LRSKT----------SL 671 (805)
Q Consensus 605 ~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f---~~~~~----------~~ 671 (805)
.++...-+||.+...+...+.+.--.|.-.|+++||++.-.+-||.|..|+..-.=++-+ .++.. .-
T Consensus 443 ~~~~ilplHs~~~~~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna 522 (924)
T KOG0920 443 LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANA 522 (924)
T ss_pred CCEEEEECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCEEEEEEECCCCCCCCCEEEECCCCCH
T ss_conf 62588705100886889986178999951232220137534523674799864715444405667854000242010036
Q ss_pred HHHHHHHCCCCCCEEE-EEECC
Q ss_conf 7665431279986699-98248
Q gi|254780991|r 672 IQTIGRAARNVNSKVI-LYADT 692 (805)
Q Consensus 672 ~q~~GRagR~~~G~~i-l~ad~ 692 (805)
-||.|||||-.+|.++ +|...
T Consensus 523 ~QR~GRAGRv~~G~cy~Ly~~~ 544 (924)
T KOG0920 523 KQRRGRAGRVRPGICYHLYTRS 544 (924)
T ss_pred HHHCCCCCCCCCCEEEEECCCH
T ss_conf 7754555564576268840534
No 103
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.78 E-value=9.5e-07 Score=69.07 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=108.4
Q ss_pred CCCCCCC-CCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 1244677-200001331016889999998630232124662147899999999863596687325764578999999997
Q gi|254780991|r 550 RPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 (805)
Q Consensus 550 rptg~id-p~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~ 628 (805)
+|..-.| |...-+......+-++++|.++-.+|.=+||+|.+-...|.|+..|...||...-+..--...+-+-|-+.=
T Consensus 416 ~p~~R~d~~d~iy~t~~~K~~Av~~ei~~~~~~gqPVLvGT~Sve~SE~ls~~L~~~gi~h~VLNAk~~~~EA~Iia~AG 495 (913)
T PRK13103 416 KPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAG 495 (913)
T ss_pred CCCCEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCC
T ss_conf 98610119986983899999999999999997499889962746889999999997699751204887379999998337
Q ss_pred HCCCCCEEEEHHHHHCCCCCC-----CCCEEEEECCCC--------------------CCC-----CC--CHHHHHHHHH
Q ss_conf 318986999845875357877-----711799962885--------------------674-----44--6013776654
Q gi|254780991|r 629 RLGKFDVLVGINLLREGLDIP-----ECGLVAILDADK--------------------EGF-----LR--SKTSLIQTIG 676 (805)
Q Consensus 629 ~~g~~diLvgt~~~akGlD~p-----~v~lV~i~dAD~--------------------~~f-----~~--~~~~~~q~~G 676 (805)
+.|. |-|+|||+.||-||- ++.....-+++. .|+ -| |-|-=-|--|
T Consensus 496 ~~ga--VTIATNMAGRGTDI~LGgn~e~~~~~~~~~~~e~~~~~~~~~~~~~~~V~~~GGL~VIgterheSrRiDnQLrG 573 (913)
T PRK13103 496 APGA--LTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRG 573 (913)
T ss_pred CCCC--EEEECCCCCCCCCEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCC
T ss_conf 8997--89716456898695268860344431036767789999999998877898629849996165521257878607
Q ss_pred HHCC-CCCCEEEEEECCCCHHHHHHH
Q ss_conf 3127-998669998248988999999
Q gi|254780991|r 677 RAAR-NVNSKVILYADTITKSIQLAI 701 (805)
Q Consensus 677 RagR-~~~G~~il~ad~~t~~~~~ai 701 (805)
|+|| |.+|...+|....++-|..+-
T Consensus 574 RsGRQGDPG~s~F~lSleDdLmr~Fg 599 (913)
T PRK13103 574 RAGRQGDPGSSRFYLSLEDSLMRIFA 599 (913)
T ss_pred CCCCCCCCCCCEEEEEECHHHHHHHC
T ss_conf 43568999865489970468998857
No 104
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=98.77 E-value=9.8e-07 Score=68.97 Aligned_cols=112 Identities=23% Similarity=0.337 Sum_probs=86.9
Q ss_pred HHHH-HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCE---EEECCCCCCHH---HH---HHHHHHHHC-----CCCCEE
Q ss_conf 9999-986302321246621478999999998635966---87325764578---99---999999731-----898699
Q gi|254780991|r 572 YDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR---VRYMHSEVKTL---ER---IEIIRDLRL-----GKFDVL 636 (805)
Q Consensus 572 ~~ei-~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~---~~~~h~~~~~~---~r---~~il~~~~~-----g~~diL 636 (805)
++++ -+.+..+.++++.+.|-+.|-++...+.+.+-. ++-+||--... +. .+.|..|++ ++--|+
T Consensus 258 ~~~~~~~~~~~~~~~~ii~NtV~~A~~~Y~~~kE~~p~~~~~~L~HsRF~~~DR~~KEde~~~l~e~~~S~~~~~~~~v~ 337 (424)
T TIGR01587 258 LERLLLEELKKGGKVLIIVNTVDRAQEFYQKLKEKAPELEEVILLHSRFTEKDRAKKEDEAELLKELKKSAWKDNEKFVI 337 (424)
T ss_pred HHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 66677874157786699985438999999998512652002124404477003667767999999851013544577069
Q ss_pred EEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CC-CC-----EEEEEEC
Q ss_conf 98458753578777117999628856744460137766543127-99-86-----6999824
Q gi|254780991|r 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NV-NS-----KVILYAD 691 (805)
Q Consensus 637 vgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~-~G-----~~il~ad 691 (805)
|+||++.-|+||.-=.++- + +....+|+||.||-.| ++ .| .++....
T Consensus 338 V~TQv~E~SlD~s~D~~iT--e------~aP~d~LiQR~GR~~R~~~~~~d~~~~~~y~~~~ 391 (424)
T TIGR01587 338 VATQVIEVSLDISVDVMIT--E------LAPIDSLIQRLGRLNRYGRKIGDIENREVYILTI 391 (424)
T ss_pred EEEEEEEEEEECCCCHHHH--H------CCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
T ss_conf 9878788864204441343--1------1501233554211101135657889872037852
No 105
>pfam12344 UvrB Ultra-violet resistance protein B. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam00271, pfam02151, pfam04851. There are two conserved sequence motifs: YAD and RRR. This family is the C terminal region of the UvrB protein which conveys mutational resistance against UV light to various different species.
Probab=98.75 E-value=4.8e-09 Score=86.25 Aligned_cols=43 Identities=58% Similarity=0.837 Sum_probs=41.1
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9824898899999998788888888768871885302346677
Q gi|254780991|r 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 (805)
Q Consensus 688 l~ad~~t~~~~~ai~e~~rrr~~q~~~n~~~~i~p~~i~k~i~ 730 (805)
||||.+|+||+++|+||+|||.+|++||++|||+|++|.|++.
T Consensus 1 lYAD~~T~SM~~ai~eT~rRR~~Q~~yN~~h~I~P~ti~k~i~ 43 (44)
T pfam12344 1 LYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIKKKIR 43 (44)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9875251999999999999999999999983998625556286
No 106
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=3.3e-07 Score=72.55 Aligned_cols=147 Identities=19% Similarity=0.236 Sum_probs=107.1
Q ss_pred CCCCCCC-CCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 1244677-200001331016889999998630232124662147899999999863596687325764578999999997
Q gi|254780991|r 550 RPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 (805)
Q Consensus 550 rptg~id-p~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~ 628 (805)
+|..-.| |...-+......+-++++|.++-.+|.=+||+|.+-...|.|+..|...||...-+..--...+-+-|-+.=
T Consensus 416 ~p~~R~d~~d~vy~t~~~K~~Av~~ei~~~~~~gqPVLvGT~sve~SE~ls~~L~~~gi~h~VLNAk~h~~EA~Iia~AG 495 (908)
T PRK13107 416 RPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAG 495 (908)
T ss_pred CCCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHCC
T ss_conf 98502508986975899999999999999997599889950528999999999974678530104887688999999549
Q ss_pred HCCCCCEEEEHHHHHCCCCCCCCCEEEEECCC----------------------------CCCC--C---C--CHHHHHH
Q ss_conf 31898699984587535787771179996288----------------------------5674--4---4--6013776
Q gi|254780991|r 629 RLGKFDVLVGINLLREGLDIPECGLVAILDAD----------------------------KEGF--L---R--SKTSLIQ 673 (805)
Q Consensus 629 ~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD----------------------------~~~f--~---~--~~~~~~q 673 (805)
+.|. |-|+|||+.||-||-- =|++++- ..|+ . | |-|-=-|
T Consensus 496 ~~ga--VTIATNMAGRGTDI~L---GGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VigterhesrRiDnQ 570 (908)
T PRK13107 496 RTGA--VTIATNMAGRGTDIVL---GGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQ 570 (908)
T ss_pred CCCC--EEEECCCCCCCCCEEC---CCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
T ss_conf 9998--7983336789868425---8862021332028648789999999988666898659808985143312467777
Q ss_pred HHHHHCC-CCCCEEEEEECCCCHHHHHHH
Q ss_conf 6543127-998669998248988999999
Q gi|254780991|r 674 TIGRAAR-NVNSKVILYADTITKSIQLAI 701 (805)
Q Consensus 674 ~~GRagR-~~~G~~il~ad~~t~~~~~ai 701 (805)
--||+|| |.+|...+|....++-|..+-
T Consensus 571 LrGRsgRQGDpG~srFflSLEDdLmr~Fg 599 (908)
T PRK13107 571 LRGRAGRQGDAGSSRFYLSMEDSLMRIFA 599 (908)
T ss_pred HHCCCCCCCCCCCCEEEEECCHHHHHHHC
T ss_conf 61222357899853365313289999755
No 107
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.73 E-value=9.1e-07 Score=69.23 Aligned_cols=136 Identities=17% Similarity=0.176 Sum_probs=103.3
Q ss_pred CEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 00013310168899999986302321246621478999999998635966873257645789999999973189869998
Q gi|254780991|r 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 (805)
Q Consensus 559 ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvg 638 (805)
..-+.......-+.++|.++-.+|.=+||+|.+-...|.|+..|...||....+...-...+-+-|-+.=+.|. |-|+
T Consensus 409 ~v~~t~~~k~~av~~~v~~~~~~g~pvLvgt~sv~~Se~~s~~L~~~~i~h~vLnAk~~~~Ea~Iia~AG~~g~--vTia 486 (799)
T PRK09200 409 KVFATVDEKYKAVIEEVKERHETGRPVLIGTGSIEQSEYFSKLLFEAGIPHNLLNAKNAAQEAQIIAEAGQKGA--VTVA 486 (799)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCCCCCE--EEEE
T ss_conf 01089999999999999999857998899838579999999999865764332053217789999982789994--8984
Q ss_pred HHHHHCCCCCCC---C-----CEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHH
Q ss_conf 458753578777---1-----17999628856744460137766543127-998669998248988999999
Q gi|254780991|r 639 INLLREGLDIPE---C-----GLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAI 701 (805)
Q Consensus 639 t~~~akGlD~p~---v-----~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai 701 (805)
|||+.||-||-- | =+|+... ...|.|-=-|-.||||| |.+|...+|....++-|...-
T Consensus 487 TnMAGRGtDI~l~~~v~~~GGL~Vigte-----rhes~Rid~QlrGR~gRQGdpG~s~f~~sled~l~r~f~ 553 (799)
T PRK09200 487 TNMAGRGTDIKLGEGVHELGGLAVIGTE-----RMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLVKRFA 553 (799)
T ss_pred CCCCCCCCCCCCCCCHHHCCCEEEEECC-----CCCHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHC
T ss_conf 5455898695338453543881774034-----451466776751653457999854899851478998746
No 108
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.73 E-value=1e-06 Score=68.78 Aligned_cols=148 Identities=19% Similarity=0.209 Sum_probs=108.3
Q ss_pred CCCCCCC-CCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 1244677-200001331016889999998630232124662147899999999863596687325764578999999997
Q gi|254780991|r 550 RPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 (805)
Q Consensus 550 rptg~id-p~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~ 628 (805)
+|..-.| |...-+......+-++++|.++-.+|.=+||+|.+-...|.|++.|...||....+...-...+-+-|-+.=
T Consensus 521 ~P~~R~D~~D~vy~t~~~K~~Aii~ei~~~~~~gqPVLVGT~SVe~SE~lS~~L~~~gI~h~VLNAk~h~~EA~IIa~AG 600 (983)
T PRK12900 521 RPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIEHNVLNAKQNEREAEIVAEAG 600 (983)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCC
T ss_conf 98400126550418999999999999999974799889983878999999999998599556516784788999999369
Q ss_pred HCCCCCEEEEHHHHHCCCCCC---CCCEEEEECCCCCCCCC--CHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHH
Q ss_conf 318986999845875357877---71179996288567444--60137766543127-998669998248988999999
Q gi|254780991|r 629 RLGKFDVLVGINLLREGLDIP---ECGLVAILDADKEGFLR--SKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAI 701 (805)
Q Consensus 629 ~~g~~diLvgt~~~akGlD~p---~v~lV~i~dAD~~~f~~--~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai 701 (805)
+.|. |-|+|||+.||-||- +|.=.|=|.. =|--| |-|-=-|-.||+|| |.+|...+|....++-|..+-
T Consensus 601 ~~Ga--VTIATNMAGRGTDIkLg~~V~elGGL~V--IgTErheSrRIDnQLrGRaGRQGDPG~S~F~lSLeDdLmr~Fg 675 (983)
T PRK12900 601 QKGA--VTIATNMAGRGTDIKLGEGVRELGGLFI--LGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFG 675 (983)
T ss_pred CCCC--EEEECCCCCCCCCCCCCCCHHHCCCEEE--EECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHC
T ss_conf 9997--7982436789858254834465388077--5114230256787860432457999853999964179999754
No 109
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.72 E-value=2.5e-06 Score=65.94 Aligned_cols=147 Identities=20% Similarity=0.219 Sum_probs=109.6
Q ss_pred CCCCCCC-CCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 1244677-200001331016889999998630232124662147899999999863596687325764578999999997
Q gi|254780991|r 550 RPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 (805)
Q Consensus 550 rptg~id-p~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~ 628 (805)
+|..-.| |...-+....+.+-+.++|.++-.+|.=+||+|.+-...|.|++.|...||...-+...-...+-+-|-+.=
T Consensus 405 ~P~~R~D~~D~vy~t~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIA~AG 484 (775)
T PRK12326 405 KPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTRDVAESEELAERLVRRGVPAVVLNAKNDAEEAAVIAEAG 484 (775)
T ss_pred CCCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHCC
T ss_conf 98410458881646999999999999999997599889970718989999999987699830236897276999999459
Q ss_pred HCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC------CCC-------CCCHHHHHHHHHHHCC-CCCCEEEEEECCCC
Q ss_conf 318986999845875357877711799962885------674-------4460137766543127-99866999824898
Q gi|254780991|r 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADK------EGF-------LRSKTSLIQTIGRAAR-NVNSKVILYADTIT 694 (805)
Q Consensus 629 ~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~------~~f-------~~~~~~~~q~~GRagR-~~~G~~il~ad~~t 694 (805)
+.|. |-|+|||+.||-||-- =|+-.+|. .|+ -.|.|-=-|-.||+|| |.+|...+|....+
T Consensus 485 ~~Ga--VTIATNMAGRGTDIkL---Gg~~e~~~~~V~elGGL~VIgterheSrRIDnQLrGRaGRQGDPGsS~FflSLED 559 (775)
T PRK12326 485 KYGA--VTVSTQMAGRGTDIRL---GGSDEADHDRVVELGGLHVVGTGRHRSQRLDNQLRGRAGRQGDPGSSVFFVSWED 559 (775)
T ss_pred CCCC--EEEECCCCCCCCCEEC---CCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECH
T ss_conf 9998--7982336789868414---8972232478986599078521433346778676223123799986158997033
Q ss_pred HHHHHHH
Q ss_conf 8999999
Q gi|254780991|r 695 KSIQLAI 701 (805)
Q Consensus 695 ~~~~~ai 701 (805)
+-|....
T Consensus 560 dL~~~~g 566 (775)
T PRK12326 560 DVVVANL 566 (775)
T ss_pred HHHHHHC
T ss_conf 8998536
No 110
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.72 E-value=6.7e-07 Score=70.23 Aligned_cols=143 Identities=20% Similarity=0.238 Sum_probs=106.3
Q ss_pred CCCCCCCCC-CEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 124467720-0001331016889999998630232124662147899999999863596687325764578999999997
Q gi|254780991|r 550 RPTGLVDPP-VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 (805)
Q Consensus 550 rptg~idp~-ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~ 628 (805)
+|..-.|-+ ..-+......+-++.+|.++-.+|.=+||+|.+-...|.|+..|...||...-+..--...+-+-|-+.=
T Consensus 599 ~P~~R~D~~D~iy~t~~~K~~Aii~ei~~~~~~GqPVLVGT~SVe~SE~lS~~L~~~gi~h~VLNAk~h~~EAeIIA~AG 678 (1111)
T PRK12901 599 RPIARKDKNDRVYKTKREKYNAVIEEIVELVEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAG 678 (1111)
T ss_pred CCCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCC
T ss_conf 98656628883866999999999999999996499789971718889999999987787387737787799999998468
Q ss_pred HCCCCCEEEEHHHHHCCCCCCCCCEEEEECCC---CCCC--CCCHH-----HHHHHHHHHCC-CCCCEEEEEECCCCHHH
Q ss_conf 31898699984587535787771179996288---5674--44601-----37766543127-99866999824898899
Q gi|254780991|r 629 RLGKFDVLVGINLLREGLDIPECGLVAILDAD---KEGF--LRSKT-----SLIQTIGRAAR-NVNSKVILYADTITKSI 697 (805)
Q Consensus 629 ~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD---~~~f--~~~~~-----~~~q~~GRagR-~~~G~~il~ad~~t~~~ 697 (805)
+.|. |-|+|||+.||-||-- ... ..|+ ...|+ -=-|--||+|| |.+|...+|....++-|
T Consensus 679 ~~Ga--VTIATNMAGRGTDIkL-------~~~v~~~GGL~VigTERheSrRIDnQLrGRsGRQGDPG~S~F~lSlEDdLm 749 (1111)
T PRK12901 679 QKGT--VTIATNMAGRGTDIKL-------SPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFFVSLEDDLM 749 (1111)
T ss_pred CCCC--EEEECCCCCCCCCCCC-------CHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHH
T ss_conf 9996--7972434578858253-------655786278277520323125677786043244689875426653117899
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780991|r 698 QLAI 701 (805)
Q Consensus 698 ~~ai 701 (805)
..+-
T Consensus 750 R~Fg 753 (1111)
T PRK12901 750 RLFG 753 (1111)
T ss_pred HHHC
T ss_conf 9864
No 111
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.70 E-value=2.7e-06 Score=65.64 Aligned_cols=138 Identities=18% Similarity=0.162 Sum_probs=102.3
Q ss_pred CEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 00013310168899999986302321246621478999999998635966873257645789999999973189869998
Q gi|254780991|r 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 (805)
Q Consensus 559 ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvg 638 (805)
..-+....+-+-++.+|.++-.+|.=+||+|.+-...|.|++.|...||....+..--...+-+-|-+.=+.|. |-|+
T Consensus 417 ~iy~t~~~K~~Ai~~ei~~~~~~gqPvLvGT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~EA~IIa~AG~~Ga--VTIA 494 (823)
T PRK12906 417 LLYPTLDSKFNAVVDDIKERHAKGQPVLVGTVSIESSERLSQLLDKAGIPHAVLNAKNHAKEAEIIAQAGQRGA--VTIA 494 (823)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCCCCCE--EEEE
T ss_conf 46479999999999999999867998899717589999999999976870353068775789999983489993--8970
Q ss_pred HHHHHCCCCCCCCCEEEEECCC----------------------------CCCC-----C--CCHHHHHHHHHHHCC-CC
Q ss_conf 4587535787771179996288----------------------------5674-----4--460137766543127-99
Q gi|254780991|r 639 INLLREGLDIPECGLVAILDAD----------------------------KEGF-----L--RSKTSLIQTIGRAAR-NV 682 (805)
Q Consensus 639 t~~~akGlD~p~v~lV~i~dAD----------------------------~~~f-----~--~~~~~~~q~~GRagR-~~ 682 (805)
|||+.||-||-- =++...+ ..|+ - -|.|-=-|-.||||| |.
T Consensus 495 TNMAGRGTDI~L---Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTErheSrRIDnQLrGRaGRQGD 571 (823)
T PRK12906 495 TNMAGRGTDIKL---GGNPFEDIEAYQEAWIRELPKMKQRCEERRDKVRELGGLAVIGTERHESRRIDNQLRGRSGRQGD 571 (823)
T ss_pred CCCCCCCCCEEE---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCC
T ss_conf 655689879630---89730213433222466788888877655689997389379850444025678787232134799
Q ss_pred CCEEEEEECCCCHHHHHHH
Q ss_conf 8669998248988999999
Q gi|254780991|r 683 NSKVILYADTITKSIQLAI 701 (805)
Q Consensus 683 ~G~~il~ad~~t~~~~~ai 701 (805)
+|...+|....++-|..+-
T Consensus 572 PGss~F~lSLEDdLmr~Fg 590 (823)
T PRK12906 572 PGSTRFYLSLEDDLMRRFG 590 (823)
T ss_pred CCCCEEEEECCHHHHHHHC
T ss_conf 9852376533469998747
No 112
>KOG0922 consensus
Probab=98.69 E-value=4.1e-06 Score=64.33 Aligned_cols=83 Identities=23% Similarity=0.218 Sum_probs=65.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEE--------EECCCC-----CCCCCCHHHHHHH
Q ss_conf 687325764578999999997318986999845875357877711799--------962885-----6744460137766
Q gi|254780991|r 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA--------ILDADK-----EGFLRSKTSLIQT 674 (805)
Q Consensus 608 ~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~--------i~dAD~-----~~f~~~~~~~~q~ 674 (805)
...-+||.+...+..++...--.|.=.|+++||++.--+-||+|..|+ +||+.. .-++-|-.+-.||
T Consensus 292 ~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QR 371 (674)
T KOG0922 292 LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQR 371 (674)
T ss_pred EEEEEECCCCHHHHHHHCCCCCCCCCEEEEECCEEEEEEEECCEEEEECCCCEEEEEECCCCCCCCEEEEECHHHHHHHH
T ss_conf 22221045887876200267999862489972312101773562899738736777635646744126772129877533
Q ss_pred HHHHCCCCCCEEE-EEE
Q ss_conf 5431279986699-982
Q gi|254780991|r 675 IGRAARNVNSKVI-LYA 690 (805)
Q Consensus 675 ~GRagR~~~G~~i-l~a 690 (805)
+|||||-.+|+++ ||+
T Consensus 372 aGRAGRt~pGkcyRLYt 388 (674)
T KOG0922 372 AGRAGRTGPGKCYRLYT 388 (674)
T ss_pred CCCCCCCCCCEEEEEEE
T ss_conf 24578988944888500
No 113
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.68 E-value=2.4e-06 Score=66.11 Aligned_cols=150 Identities=20% Similarity=0.228 Sum_probs=105.9
Q ss_pred CCCCCCCC-CCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 12446772-00001331016889999998630232124662147899999999863596687325764578999999997
Q gi|254780991|r 550 RPTGLVDP-PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 (805)
Q Consensus 550 rptg~idp-~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~ 628 (805)
+|..-.|- ...-+......+-++++|.++-.+|.=+||+|.+-...|.|+..|...||...-+..--...+-+-|-+.=
T Consensus 411 ~p~~R~d~~d~vy~t~~~K~~Av~~ei~~~~~~gqPVLvGT~sve~SE~ls~~L~~~gi~h~VLNAk~~~~EA~Iia~AG 490 (896)
T PRK13104 411 RSMIRKDEADLVYLTQADKFQAIIEDVRECGVRRQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAG 490 (896)
T ss_pred CCCEEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCC
T ss_conf 99612379986972899999999999999997599789934857989999999998699246526787478999998338
Q ss_pred HCCCCCEEEEHHHHHCCCCC---CCCCE-EEEECCCC----------------------CCC-----CC--CHHHHHHHH
Q ss_conf 31898699984587535787---77117-99962885----------------------674-----44--601377665
Q gi|254780991|r 629 RLGKFDVLVGINLLREGLDI---PECGL-VAILDADK----------------------EGF-----LR--SKTSLIQTI 675 (805)
Q Consensus 629 ~~g~~diLvgt~~~akGlD~---p~v~l-V~i~dAD~----------------------~~f-----~~--~~~~~~q~~ 675 (805)
+.|. |-|+|||+.||-|| +++.. +..+.+|. .|+ -| |-|-=-|--
T Consensus 491 ~~ga--VTIATNMAGRGTDI~LGg~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~v~~~GGL~VigterhesrRiD~QLr 568 (896)
T PRK13104 491 RPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLR 568 (896)
T ss_pred CCCC--EEECCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH
T ss_conf 9996--89716556888582178751244430565511667999999999853344205872898604331246777860
Q ss_pred HHHCC-CCCCEEEEEECCCCHHHHHHH
Q ss_conf 43127-998669998248988999999
Q gi|254780991|r 676 GRAAR-NVNSKVILYADTITKSIQLAI 701 (805)
Q Consensus 676 GRagR-~~~G~~il~ad~~t~~~~~ai 701 (805)
||+|| |.+|...+|....++-|..+-
T Consensus 569 GRaGRQGDPG~s~F~lSleDdLmr~Fg 595 (896)
T PRK13104 569 GRAGRQGDPGSSRFYLSLEDNLMRIFA 595 (896)
T ss_pred CCCCCCCCCCCCEEEEECCHHHHHHHC
T ss_conf 532456899863266533379998746
No 114
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.67 E-value=6.4e-06 Score=62.86 Aligned_cols=143 Identities=20% Similarity=0.178 Sum_probs=106.3
Q ss_pred CCCCCCC-CCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 2446772-000013310168899999986302321246621478999999998635966873257645789999999973
Q gi|254780991|r 551 PTGLVDP-PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629 (805)
Q Consensus 551 ptg~idp-~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~ 629 (805)
|....|- ...-+......+-++++|..+-.+|.=+||+|.+-...|.|+..|...||....+...-...+-+-|-+.=+
T Consensus 394 p~~R~d~~d~vy~t~~~k~~av~~ei~~~~~~gqPvLvgt~sve~Se~ls~~L~~~~i~h~vLNAk~~~~EA~Iia~AG~ 473 (885)
T PRK12903 394 PVIRKDEPDSIFGTKHAKWKAVVKEVKRVHEKGQPILIGTAQVEDSEQLHEYLLEANIPHTVLNAKQHAREAEIIAKAGQ 473 (885)
T ss_pred CCEEECCCCHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCC
T ss_conf 85214283231078999999999999999857998899568479999999999856877035546865889999995489
Q ss_pred CCCCCEEEEHHHHHCCCCCCC---CC-----EEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHH
Q ss_conf 189869998458753578777---11-----7999628856744460137766543127-99866999824898899999
Q gi|254780991|r 630 LGKFDVLVGINLLREGLDIPE---CG-----LVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLA 700 (805)
Q Consensus 630 ~g~~diLvgt~~~akGlD~p~---v~-----lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~a 700 (805)
.|. |-|+|||+.||-||-- |. +|+-.. ---|-|-=-|--||||| |.+|...+|....+.-|..+
T Consensus 474 ~g~--VTiATNMAGRGTDI~Lg~~v~~~GGL~Vigte-----rhesrRiD~QLrGR~gRQGDpG~s~f~~SleD~lmr~F 546 (885)
T PRK12903 474 KGA--ITIATNMAGRGTDIKLSKGVLELGGLYVLGTE-----KAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRF 546 (885)
T ss_pred CCC--EEEECCCCCCCCCCCCCHHHHHCCCEEEEECC-----CCCCHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHH
T ss_conf 991--89837667899685741658972985898426-----56204588886074346899973599997264899974
No 115
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.66 E-value=1.1e-06 Score=68.62 Aligned_cols=151 Identities=23% Similarity=0.198 Sum_probs=94.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH-HHHHC-------CCCEEEEECCHHHHHHHHHHHHHHCCC-
Q ss_conf 888438999999998873973379986337646999999-99971-------997899931634689999999986789-
Q gi|254780991|r 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK-VIEAM-------QRPAIVMAPNKILAAQLYSEFKNFFPH- 219 (805)
Q Consensus 149 P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~-lI~~~-------gr~aLvLvPei~La~QL~~rfk~~Fp~- 219 (805)
|+.=|.+||..+.+ | +..+...-||||||..|+= ++++. +-++|||+|..-||.|.++.|+.+-..
T Consensus 22 pt~IQ~~~ip~il~----g-~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Qi~~~~~~l~~~~ 96 (203)
T cd00268 22 PTPIQARAIPPLLS----G-RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCHHHHHHHHHHHC----C-CCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999977----9-988997579972228888699999861667689669999687999999999999850579
Q ss_pred -CEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCC----CCCHHHHHCCE
Q ss_conf -8389986213444421015554321022103588999999999999854998499827789616----89834772257
Q gi|254780991|r 220 -NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG----IGSVESYSQMI 294 (805)
Q Consensus 220 -n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfg----l~~P~~~lglI 294 (805)
-.+..+++..+ .+++ ...+ .....|||||...++- -...+.++.++
T Consensus 97 ~i~~~~~~gg~~--------------------~~~~--------~~~l-~~~~~IlI~TPgrl~~~l~~~~~~l~~l~~l 147 (203)
T cd00268 97 NLKVVVIYGGTS--------------------IDKQ--------IRKL-KRGPHIVVATPGRLLDLLERGKLDLSKVKYL 147 (203)
T ss_pred CEEEEEEECCCC--------------------HHHH--------HHHH-HCCCEEEEECCHHHHHHHHCCCCCCCCCCEE
T ss_conf 838999838988--------------------7999--------9998-5387599968189999998488651322489
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH-CCCCEEEECCCCCHH
Q ss_conf 99941981117875323431176563387754533-187247831788877
Q gi|254780991|r 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF-RVCGDSIEIFPSHLE 344 (805)
Q Consensus 295 IvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f-~~rg~ILdsatps~E 344 (805)
|+||.+.-.+ .+|.. ++...-..+ ..+-.++=|||-+-+
T Consensus 148 VlDEAD~ll~----------~gf~~-~i~~I~~~l~~~~Q~~lfSAT~~~~ 187 (203)
T cd00268 148 VLDEADRMLD----------MGFED-QIREILKLLPKDRQTLLFSATMPKE 187 (203)
T ss_pred EEECHHHHHH----------CCCHH-HHHHHHHHCCCCCEEEEEEECCCHH
T ss_conf 9985888874----------77699-9999998589677799998049988
No 116
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.65 E-value=1.3e-06 Score=68.07 Aligned_cols=139 Identities=19% Similarity=0.195 Sum_probs=104.1
Q ss_pred CCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 20000133101688999999863023212466214789999999986359668732576457899999999731898699
Q gi|254780991|r 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636 (805)
Q Consensus 557 p~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diL 636 (805)
|...-+......+-++++|.++-.+|.=+||+|.+-...|.|+..|...||...-+...-...+-+-|-+.=+.|. |-
T Consensus 543 ~D~vy~T~~~K~~Avi~eI~~~h~~GqPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIIA~AG~~Ga--VT 620 (969)
T PRK12899 543 NDEFYMTEREKYHAIVNEIASIHRSGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKLGA--VT 620 (969)
T ss_pred CCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCCC--EE
T ss_conf 8838528999999999999999957998899838579999999999986996454151117899999995599997--79
Q ss_pred EEHHHHHCCCCCCCCCEEEEECCCCCCC--CCCH-----HHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHH
Q ss_conf 9845875357877711799962885674--4460-----137766543127-998669998248988999999
Q gi|254780991|r 637 VGINLLREGLDIPECGLVAILDADKEGF--LRSK-----TSLIQTIGRAAR-NVNSKVILYADTITKSIQLAI 701 (805)
Q Consensus 637 vgt~~~akGlD~p~v~lV~i~dAD~~~f--~~~~-----~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai 701 (805)
|+|||+.||-||---.= +.+ ..|+ ...| |-=-|-.||+|| |.+|...+|....++-|..+-
T Consensus 621 IATNMAGRGTDIkL~~~--V~~--lGGLhVIGTERHESRRIDnQLRGRaGRQGDPGsS~F~lSLEDdLmR~Fg 689 (969)
T PRK12899 621 VATNMAGRGTDIKLDEE--AVA--VGGLHVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRLMRLFA 689 (969)
T ss_pred EECCCCCCCCCCCCCCC--HHH--CCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHC
T ss_conf 71326789858313813--343--3872785214340145776760331347899853267651268998743
No 117
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=98.65 E-value=1.8e-07 Score=74.58 Aligned_cols=58 Identities=40% Similarity=0.517 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHH
Q ss_conf 843899999999887397337998633764699999999971---997899931634689999999
Q gi|254780991|r 151 GDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 151 gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rf 213 (805)
..|.+|++++.. . +..++...||||||.+++.+|++. ++.+||+||.+.|..|+.++|
T Consensus 6 ~yQ~~a~~~~~~---~--~~~~i~~pTGsGKT~~~~~~i~~~~~~~~~~lvlvp~~~L~~Q~~~~~ 66 (103)
T pfam04851 6 PYQIEAIRNLLE---K--KRGLIVMATGSGKTLTAAKLIARLLKGKKKVLFLVPRKDLLEQALEEF 66 (103)
T ss_pred HHHHHHHHHHHH---C--CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
T ss_conf 999999999996---3--986999589998799999999999846992999908299999999965
No 118
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.63 E-value=1e-06 Score=68.86 Aligned_cols=147 Identities=20% Similarity=0.242 Sum_probs=104.8
Q ss_pred CCCCCCCCC-CEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 124467720-0001331016889999998630232124662147899999999863596687325764578999999997
Q gi|254780991|r 550 RPTGLVDPP-VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 (805)
Q Consensus 550 rptg~idp~-ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~ 628 (805)
+|..-.|-+ ..-+....+.+-++++|.++-.+|.=+||+|.+-...|.|+..|...||...-+...-...+-+-|-+.=
T Consensus 397 ~p~~R~d~~d~iy~t~~~K~~ai~~ei~~~~~~gqPvLvGT~sve~SE~ls~~L~~~~i~h~vLNAk~~~~EA~Iia~AG 476 (833)
T PRK12904 397 RPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTTSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQAG 476 (833)
T ss_pred CCCEEEECCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHCC
T ss_conf 98543608870207999999999999999997699789942747989999999987378277617736666889999559
Q ss_pred HCCCCCEEEEHHHHHCCCCCCCCCEEEEEC----------------------CC------CCCC-----CC--CHHHHHH
Q ss_conf 318986999845875357877711799962----------------------88------5674-----44--6013776
Q gi|254780991|r 629 RLGKFDVLVGINLLREGLDIPECGLVAILD----------------------AD------KEGF-----LR--SKTSLIQ 673 (805)
Q Consensus 629 ~~g~~diLvgt~~~akGlD~p~v~lV~i~d----------------------AD------~~~f-----~~--~~~~~~q 673 (805)
+.|. |-|+|||+.||-||--- |+.+ ++ ..|+ -| |-|-=-|
T Consensus 477 ~~ga--VTiATNMAGRGTDI~LG---Gn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL~VigterhesrRiD~Q 551 (833)
T PRK12904 477 RPGA--VTIATNMAGRGTDIKLG---GNPEMLAAGLEDETEEQIAKIKAEWQKEHEEVLEAGGLHVIGTERHESRRIDNQ 551 (833)
T ss_pred CCCC--EEEEECCCCCCCCEECC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
T ss_conf 9997--68740256788682168---863344443200146678888888765337788638927985143334667878
Q ss_pred HHHHHCC-CCCCEEEEEECCCCHHHHHHH
Q ss_conf 6543127-998669998248988999999
Q gi|254780991|r 674 TIGRAAR-NVNSKVILYADTITKSIQLAI 701 (805)
Q Consensus 674 ~~GRagR-~~~G~~il~ad~~t~~~~~ai 701 (805)
--||+|| |.+|...+|....++-|..+-
T Consensus 552 LrGR~GRQGDpG~s~f~lSleDdLmr~Fg 580 (833)
T PRK12904 552 LRGRSGRQGDPGSSRFYLSLEDDLMRIFG 580 (833)
T ss_pred HHCCCCCCCCCCCCEEEEECCHHHHHHHH
T ss_conf 61221456899853265412089999865
No 119
>KOG0924 consensus
Probab=98.61 E-value=7.4e-06 Score=62.39 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=68.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEE--------ECCCC-----CCCCCCHHHH
Q ss_conf 5966873257645789999999973189869998458753578777117999--------62885-----6744460137
Q gi|254780991|r 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI--------LDADK-----EGFLRSKTSL 671 (805)
Q Consensus 605 ~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i--------~dAD~-----~~f~~~~~~~ 671 (805)
.++.+.-+-|.+.+.-..+|.+.-..|.-.|+|+||++.--|-+|++..|+- |+.+. .-+|-|-..-
T Consensus 596 ~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA 675 (1042)
T KOG0924 596 TDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANA 675 (1042)
T ss_pred CCEEEEEEHHHCCHHHHHHHCCCCCCCCEEEEEECCCHHHCEEECCEEEEEECCCEEEEECCCCCCCCEEEEEECHHCCC
T ss_conf 86278840552866666433056888812699862211211332664899725724564105665642257875122131
Q ss_pred HHHHHHHCCCCCCEEE-EEEC
Q ss_conf 7665431279986699-9824
Q gi|254780991|r 672 IQTIGRAARNVNSKVI-LYAD 691 (805)
Q Consensus 672 ~q~~GRagR~~~G~~i-l~ad 691 (805)
-|++|||||-.+|.++ +|+.
T Consensus 676 ~QRaGRAGRt~pG~cYRlYTe 696 (1042)
T KOG0924 676 DQRAGRAGRTGPGTCYRLYTE 696 (1042)
T ss_pred HHHCCCCCCCCCCCEEEEHHH
T ss_conf 011244578899626530236
No 120
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.61 E-value=1.6e-06 Score=67.36 Aligned_cols=146 Identities=17% Similarity=0.163 Sum_probs=108.2
Q ss_pred CCCCCCC-CCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 1244677-200001331016889999998630232124662147899999999863596687325764578999999997
Q gi|254780991|r 550 RPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628 (805)
Q Consensus 550 rptg~id-p~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~ 628 (805)
+|..-.| |...-+....+.+-++++|.++..+|.=+||+|.+-...|.|+..|...||....+...-...+-+-|-+.=
T Consensus 455 rP~~R~D~~D~vy~t~~~K~~Aii~ei~~~~~~GqPVLVGT~SVe~SE~lS~~L~~~gi~h~VLNAk~~~~EA~IIA~AG 534 (673)
T PRK12898 455 RPSQRIVLPTEVFLTLAAKWAAVAARVRELHASGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAG 534 (673)
T ss_pred CCCCCEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCC
T ss_conf 97301237985856999999999999999986799889983758999999999998699756647866687999999439
Q ss_pred HCCCCCEEEEHHHHHCCCCCCC---CC-----EEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHH
Q ss_conf 3189869998458753578777---11-----7999628856744460137766543127-9986699982489889999
Q gi|254780991|r 629 RLGKFDVLVGINLLREGLDIPE---CG-----LVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQL 699 (805)
Q Consensus 629 ~~g~~diLvgt~~~akGlD~p~---v~-----lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ 699 (805)
+.|. |-|+|||+.||-||-- |. +|+... ---|-+-=-|-.||+|| |.+|...+|....++-|..
T Consensus 535 ~~Ga--VTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTe-----rheSrRIDnQLrGRsGRQGDPGss~f~lSleDdL~r~ 607 (673)
T PRK12898 535 QRGR--ITVATNMAGRGTDIKLEPEVAARGGLHVILTE-----RHESARIDRQLAGRCGRQGDPGSSEAILSLEDDLLQQ 607 (673)
T ss_pred CCCC--EEEECCCCCCCCCCCCCHHHHHCCCCEEEECC-----CCCHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHH
T ss_conf 9998--79702367898684767678862898898437-----5511245656423544689998514899814678987
Q ss_pred HHH
Q ss_conf 999
Q gi|254780991|r 700 AID 702 (805)
Q Consensus 700 ai~ 702 (805)
+..
T Consensus 608 f~~ 610 (673)
T PRK12898 608 FLP 610 (673)
T ss_pred HCC
T ss_conf 570
No 121
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.58 E-value=1.2e-05 Score=60.96 Aligned_cols=97 Identities=22% Similarity=0.263 Sum_probs=76.0
Q ss_pred CCCCCCC-CCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCC--HHHHHHHHH
Q ss_conf 1244677-2000013310168899999986302321246621478999999998635966873257645--789999999
Q gi|254780991|r 550 RPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK--TLERIEIIR 626 (805)
Q Consensus 550 rptg~id-p~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~--~~~r~~il~ 626 (805)
+|..-.| |...-+......+-++.+|.++-.+|.=+||+|.+-...|.|+..|...||...-+..--. ..+-+-|-+
T Consensus 391 ~p~~R~D~~d~vy~t~~~K~~Av~~ei~~~h~~GqPVLvGT~SVe~SE~ls~~L~~~gi~h~vLNAk~~n~~~EA~IiA~ 470 (891)
T CHL00122 391 RPMQRKDLPDLVYKTEYSKWKAIADECFDMHKIGRPILVGTTSVEKSELLSQLLEEYQLPHNLLNAKPENVKRESEIIAQ 470 (891)
T ss_pred CCCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHH
T ss_conf 98500308895778899999999999999996799989834655889999999997478622023884307899999995
Q ss_pred HHHCCCCCEEEEHHHHHCCCCC
Q ss_conf 9731898699984587535787
Q gi|254780991|r 627 DLRLGKFDVLVGINLLREGLDI 648 (805)
Q Consensus 627 ~~~~g~~diLvgt~~~akGlD~ 648 (805)
.=+.|. |-|+|||+.||-||
T Consensus 471 AG~~ga--VTIATNMAGRGTDI 490 (891)
T CHL00122 471 AGRKGA--ITIATNMAGRGTDI 490 (891)
T ss_pred CCCCCC--EEEECCCCCCCCCE
T ss_conf 699993--89715556898784
No 122
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.52 E-value=3.8e-06 Score=64.55 Aligned_cols=97 Identities=23% Similarity=0.272 Sum_probs=75.6
Q ss_pred CCCCCCC-CCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCC--HHHHHHHHH
Q ss_conf 1244677-2000013310168899999986302321246621478999999998635966873257645--789999999
Q gi|254780991|r 550 RPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK--TLERIEIIR 626 (805)
Q Consensus 550 rptg~id-p~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~--~~~r~~il~ 626 (805)
+|..-.| |...-+.....-+-++.+|.++-..|.=+||+|.+-...|.|+..|...||...-+..--. ..+-+-|-+
T Consensus 411 ~p~~R~D~~d~vy~t~~~K~~Av~~ei~~~~~~gqPVLVGT~SVe~SE~ls~lL~~~gi~h~VLNAk~~n~~~EAeIIA~ 490 (946)
T PRK12902 411 RPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLAEQGIPHNLLNAKPENVEREAEIVAQ 490 (946)
T ss_pred CCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHH
T ss_conf 98424627002017999999999999999975899889972757989999999985588620325786442789999994
Q ss_pred HHHCCCCCEEEEHHHHHCCCCC
Q ss_conf 9731898699984587535787
Q gi|254780991|r 627 DLRLGKFDVLVGINLLREGLDI 648 (805)
Q Consensus 627 ~~~~g~~diLvgt~~~akGlD~ 648 (805)
.=+.|. |-|+|||+.||-||
T Consensus 491 AG~~ga--VTIATNMAGRGTDI 510 (946)
T PRK12902 491 AGRKGA--VTIATNMAGRGTDI 510 (946)
T ss_pred CCCCCC--EEEECCCCCCCCCE
T ss_conf 699996--89745446898695
No 123
>KOG0390 consensus
Probab=98.46 E-value=0.00026 Score=50.80 Aligned_cols=426 Identities=17% Similarity=0.180 Sum_probs=201.8
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHC-----CCCEEEEEEECCCCHHHHHHHHHHHC-----C-----CCEEEEECCHHHHH
Q ss_conf 751888888438999999998873-----97337998633764699999999971-----9-----97899931634689
Q gi|254780991|r 143 MQTDYHPSGDQPAAIAQLLKGIHS-----REKVQLLLGVTGSGKTFTMAKVIEAM-----Q-----RPAIVMAPNKILAA 207 (805)
Q Consensus 143 l~~~~~P~gdQ~~Ai~~L~~~l~~-----g~~~qlL~GVTGSGKTevya~lI~~~-----g-----r~aLvLvPei~La~ 207 (805)
|..-..| +|.++++-|...+.. +..-+.+----|+|||+..+.+|.-. + ..+||++| .+|-.
T Consensus 235 l~~~LrP--HQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~ 311 (776)
T KOG0390 235 LKKILRP--HQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP-SSLVN 311 (776)
T ss_pred HHHHCCC--HHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC-HHHHH
T ss_conf 7641281--57877899786411311158887547207887640788899999999868675544466079845-88887
Q ss_pred HHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCC---CCEEEECCHHHH-C
Q ss_conf 999999986789-83899862134444210155543210221035889999999999998549---984998277896-1
Q gi|254780991|r 208 QLYSEFKNFFPH-NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCI-Y 282 (805)
Q Consensus 208 QL~~rfk~~Fp~-n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~---~~~IVVgsrSAI-f 282 (805)
-=+.+|..+.+. +...+ +.|. -+.+ .+ +....|..+.-. ..+.+++.-.+- +
T Consensus 312 nWkkEF~KWl~~~~i~~l-----~~~~------------~~~~----~w--~~~~sil~~~~~~~~~~vli~sye~~~~~ 368 (776)
T KOG0390 312 NWKKEFGKWLGNHRINPL-----DFYS------------TKKS----SW--IKLKSILFLGYKQFTTPVLIISYETASDY 368 (776)
T ss_pred HHHHHHHHHCCCCCCCEE-----EEEC------------CCCH----HH--HHHHHHHHHHHHHEEEEEEECCHHHHHHH
T ss_conf 899999874253555404-----5423------------4525----66--66678988622112578786369999999
Q ss_pred CCCCHHHHHCCEEEEECCCCCCHHH-HHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHH---HH-----HHCCC
Q ss_conf 6898347722579994198111787-532343117656338775453318724783178887788---87-----31044
Q gi|254780991|r 283 GIGSVESYSQMIVQLKIGDSVEQKE-LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV---AW-----RVSMF 353 (805)
Q Consensus 283 gl~~P~~~lglIIvdEehd~~~~~~-~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~---~~-----Rie~f 353 (805)
.--.=....|+.|.||=|..=+... +.+-|....- .-=||=+-||...++ .. |..+.
T Consensus 369 ~~~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t--------------~rRVLLSGTp~QNdl~EyFnlL~fvrP~~L 434 (776)
T KOG0390 369 CRKILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKT--------------PRRVLLTGTPIQNDLKEYFNLLDFVRPGFL 434 (776)
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCC--------------CCEEEEECCCCCCCHHHHHHHHHHCCHHHC
T ss_conf 999854789869977988856224589999974687--------------736996077533469999788851570112
Q ss_pred CCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42002221016664001110000100000000256367887545589989989988754433211001244447777533
Q gi|254780991|r 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433 (805)
Q Consensus 354 ~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l 433 (805)
+...+-.. ..+..+........+.+.... .+|+..-.+|.
T Consensus 435 gs~~sf~k------------~~~~~i~~~~~~~~s~e~~~~----------------------------~~rl~eL~~~t 474 (776)
T KOG0390 435 GSISSFKK------------KFEIPILRGRDADASEEDRER----------------------------EERLQELRELT 474 (776)
T ss_pred CCHHHHHH------------HHHCCCCCCCCCCCCHHHHHH----------------------------HHHHHHHHHHH
T ss_conf 55378887------------751344235677855354525----------------------------79999999999
Q ss_pred HHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCC--CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCC
Q ss_conf 2112014510113331144655562023302654--4213210123447544543245654133323576655---4443
Q gi|254780991|r 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE--DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL---PSCM 508 (805)
Q Consensus 434 ~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~--d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrl---p~~~ 508 (805)
+.+.+...-. -+..|+|. +..++|--++........-..+. .+ ..+..+.+.+ -+..
T Consensus 475 ~~fi~rrt~~----------------il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~-~~~~~~~l~~~~~L~k~ 536 (776)
T KOG0390 475 NKFILRRTGD----------------ILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KM-RTLKGYALELITKLKKL 536 (776)
T ss_pred HHHEEECCCC----------------HHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHH-HH-HHHHCCHHHHHHHHHHH
T ss_conf 7652211120----------------345538885469999578089999999998777-76-54313225588998987
Q ss_pred CCCCCCCC--CHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC-CEECCCCCH-HHHHHHHHHHHHHCCCC
Q ss_conf 22211101--001215554544468675420132200234320124467720-000133101-68899999986302321
Q gi|254780991|r 509 DNRPLRFE--EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-VEIRSARTQ-VEDVYDEINLAAQQGLR 584 (805)
Q Consensus 509 ~n~pl~f~--e~~~~~~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~-ieir~~~~q-vddl~~ei~~~~~~~~R 584 (805)
||+|.-.. +.++ +....+ -|..+++|. ....+.++. .-.++.-+.-.....++
T Consensus 537 cnhP~L~~~~~~~~------------------~e~~~~-----~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek 593 (776)
T KOG0390 537 CNHPSLLLLCEKTE------------------KEKAFK-----NPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREK 593 (776)
T ss_pred HCCHHHHCCCCCCC------------------CCCCCC-----CHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 36877631332234------------------441226-----8576503212466655511566899999999998652
Q ss_pred CCC-------CCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCC---EEEEHHHHHCCCCCCCCCEE
Q ss_conf 246-------62147899999999863596687325764578999999997318986---99984587535787771179
Q gi|254780991|r 585 ILL-------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD---VLVGINLLREGLDIPECGLV 654 (805)
Q Consensus 585 ~l~-------~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~d---iLvgt~~~akGlD~p~v~lV 654 (805)
+++ .+.|..+-+.+.++ +|.....|||++...+|+.++..|....-. .|.-+--=+.||.+=+-+-|
T Consensus 594 ~~~~~v~Isny~~tldl~e~~~~~---~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRl 670 (776)
T KOG0390 594 LLVKSVLISNYTQTLDLFEQLCRW---RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRL 670 (776)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHH---CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEECCCCEE
T ss_conf 231799962289999999999765---38448997387766888899873359988741899854455576320134038
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHH
Q ss_conf 99628856744460137766543127-99866999824898899
Q gi|254780991|r 655 AILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSI 697 (805)
Q Consensus 655 ~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~ 697 (805)
+++|.|- ++-.=-|.+.||=| |.+-.|..|-=-.++..
T Consensus 671 il~D~dW-----NPa~d~QAmaR~~RdGQKk~v~iYrLlatGti 709 (776)
T KOG0390 671 ILFDPDW-----NPAVDQQAMARAWRDGQKKPVYIYRLLATGTI 709 (776)
T ss_pred EEECCCC-----CCHHHHHHHHHHCCCCCCCEEEEEEEECCCCC
T ss_conf 9957999-----82367899997645787426899996327981
No 124
>KOG0923 consensus
Probab=98.45 E-value=9.6e-06 Score=61.57 Aligned_cols=79 Identities=28% Similarity=0.355 Sum_probs=64.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCC------------------CH
Q ss_conf 668732576457899999999731898699984587535787771179996288567444------------------60
Q gi|254780991|r 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR------------------SK 668 (805)
Q Consensus 607 i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~------------------~~ 668 (805)
+.+.-+++.+.+....+|.+---.|.=.|+++||++.--|-|++|.+|+ | |||-. |-
T Consensus 507 liv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yVi--D---pGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923 507 LIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVI--D---PGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCEEEEEEECCHHHCEEECCEEEEE--C---CCCCCCCCCCCCCCCEEEEEEEECH
T ss_conf 7984000469868887635889988504898611012105446758996--6---7621124768776850677763110
Q ss_pred HHHHHHHHHHCCCCCCEEE-EEE
Q ss_conf 1377665431279986699-982
Q gi|254780991|r 669 TSLIQTIGRAARNVNSKVI-LYA 690 (805)
Q Consensus 669 ~~~~q~~GRagR~~~G~~i-l~a 690 (805)
-|-.||+|||||-.+|++. ||+
T Consensus 582 AsA~QRaGRAGRtgPGKCfRLYt 604 (902)
T KOG0923 582 ASANQRAGRAGRTGPGKCFRLYT 604 (902)
T ss_pred HHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 00444423457889972578500
No 125
>KOG0926 consensus
Probab=98.38 E-value=6.6e-06 Score=62.78 Aligned_cols=87 Identities=28% Similarity=0.304 Sum_probs=66.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCC-------C---C---CCCHHHH
Q ss_conf 5966873257645789999999973189869998458753578777117999628856-------7---4---4460137
Q gi|254780991|r 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE-------G---F---LRSKTSL 671 (805)
Q Consensus 605 ~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~-------~---f---~~~~~~~ 671 (805)
..+.+.-+-|-+++.+..++...--.|.-=|+|+||++.--|-||+|..|+--.--++ | | +-|--|-
T Consensus 603 ~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASa 682 (1172)
T KOG0926 603 GPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASA 682 (1172)
T ss_pred CCEEEEEHHHHCCHHHHHHHCCCCCCCCEEEEEECCCHHCCCCCCCEEEEEECCCHHHHCCCCCCCCEEEEEEEEECCCC
T ss_conf 86288645653487876321157988736899961300103005872699746504433034446712689876402562
Q ss_pred HHHHHHHCCCCCCEEE-EEEC
Q ss_conf 7665431279986699-9824
Q gi|254780991|r 672 IQTIGRAARNVNSKVI-LYAD 691 (805)
Q Consensus 672 ~q~~GRagR~~~G~~i-l~ad 691 (805)
-||+|||||-..|+++ ||..
T Consensus 683 dQRAGRAGRtgpGHcYRLYSS 703 (1172)
T KOG0926 683 DQRAGRAGRTGPGHCYRLYSS 703 (1172)
T ss_pred CHHCCCCCCCCCCCEEEHHHH
T ss_conf 111344578888711101346
No 126
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.15 E-value=0.0012 Score=45.93 Aligned_cols=124 Identities=14% Similarity=0.057 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHC-CCEEEECCCCCC-HHHHHHHHHHHHCCCCCEEEEHHHH
Q ss_conf 016889999998630232-1246621478999999998635-966873257645-7899999999731898699984587
Q gi|254780991|r 566 TQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYER-NIRVRYMHSEVK-TLERIEIIRDLRLGKFDVLVGINLL 642 (805)
Q Consensus 566 ~qvddl~~ei~~~~~~~~-R~l~~~~tkr~~e~l~~~~~~~-~i~~~~~h~~~~-~~~r~~il~~~~~g~~diLvgt~~~ 642 (805)
..++++.++|...+.... |+||.-...++.+.+++.+... ......-+.+.. ..-+.+.++.|+.++--||.||+=+
T Consensus 453 ~~~~~l~~~l~~li~~~~Gr~LvLFTS~r~~~~~ae~l~~~l~~~~l~Qge~~~~~~l~~~~~~~f~~~~~svLfGT~Sf 532 (636)
T TIGR03117 453 TWLENVSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKNRLASAEQQFLALYANGIQPVLIAAGGA 532 (636)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 68999999999999870798899704099999999999722788658745764035689999998727899689867764
Q ss_pred HCCCCCC----------CCCEEEEECCCC---------------CCCCCCH--H---HHHHHHHHHCCC----CCCEEEE
Q ss_conf 5357877----------711799962885---------------6744460--1---377665431279----9866999
Q gi|254780991|r 643 REGLDIP----------ECGLVAILDADK---------------EGFLRSK--T---SLIQTIGRAARN----VNSKVIL 688 (805)
Q Consensus 643 akGlD~p----------~v~lV~i~dAD~---------------~~f~~~~--~---~~~q~~GRagR~----~~G~~il 688 (805)
-+|+|+| -+++|+|--..- .||+-.. + .|-|=+||-=|. .+|.|.+
T Consensus 533 WEGVDvpG~~~~~~~Gd~Ls~VII~rLPF~~p~~p~~~~r~~~~~g~~~~~vp~A~i~lkQG~GRLIRs~d~~D~G~vai 612 (636)
T TIGR03117 533 WTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHM 612 (636)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEE
T ss_conf 06625788666788777420665756998999878999999714998777799999999774573031477889658999
Q ss_pred E
Q ss_conf 8
Q gi|254780991|r 689 Y 689 (805)
Q Consensus 689 ~ 689 (805)
.
T Consensus 613 L 613 (636)
T TIGR03117 613 L 613 (636)
T ss_pred E
T ss_conf 6
No 127
>KOG0385 consensus
Probab=98.14 E-value=0.0012 Score=45.85 Aligned_cols=398 Identities=19% Similarity=0.217 Sum_probs=216.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH------HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 438999999998873973379986337646999999999------71997899931634689999999986789838998
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE------AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~------~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f 225 (805)
-|-+-++=|..-.++|-. ..|--=-|=|||.--+.++. ....|-||++|--+|. .-..+|+.|-|+-.|..|
T Consensus 171 YQveGlnWLi~l~engin-gILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~rf~P~l~~~~~ 248 (971)
T KOG0385 171 YQLEGLNWLISLYENGIN-GILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKRFTPSLNVVVY 248 (971)
T ss_pred HHHCCHHHHHHHHHCCCC-CEEEHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHH-HHHHHHHHHCCCCCEEEE
T ss_conf 320337999999865766-584231045338999999999998517999849981276678-999999976898634988
Q ss_pred EECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHH-CCCCEEEECCHHHHCCCCCHH--HHHCCEEEEECCCC
Q ss_conf 621344442101555432102210358899999999999985-499849982778961689834--77225799941981
Q gi|254780991|r 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-ERNDCIVVSSVSCIYGIGSVE--SYSQMIVQLKIGDS 302 (805)
Q Consensus 226 ~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~-~~~~~IVVgsrSAIfgl~~P~--~~lglIIvdEehd~ 302 (805)
|+- ..+|..-.+.+. .++-.|+|.|---+..--..+ -+-..+|+||-|--
T Consensus 249 ~Gd---------------------------k~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRi 301 (971)
T KOG0385 249 HGD---------------------------KEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRI 301 (971)
T ss_pred ECC---------------------------HHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEECHHHHH
T ss_conf 479---------------------------99999999985315787668640788986688986199349995236541
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHH--HH------HCCCCCCHHHHHCCCCCCCCHHHHC
Q ss_conf 117875323431176563387754533187247831788877888--73------1044420022210166640011100
Q gi|254780991|r 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA--WR------VSMFGNDIEEISEFYPLTGQKIRNV 374 (805)
Q Consensus 303 ~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~--~R------ie~f~deIe~I~~fDplT~~~~~~~ 374 (805)
-+...... ..--+|...--+|=..||-..... |. ...|++.-+--..||-.
T Consensus 302 KN~~s~L~-------------~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~-------- 360 (971)
T KOG0385 302 KNEKSKLS-------------KILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFT-------- 360 (971)
T ss_pred CCHHHHHH-------------HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCHHHCCCHHHHHHHHCCC--------
T ss_conf 46244899-------------999985665526752785436499999999762214205788999997113--------
Q ss_pred CCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCCCCCCHHHHHHC
Q ss_conf 00100000000256367887545589989989988754433211001244447777533----21120145101133311
Q gi|254780991|r 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML----ETTGSCQSIENYSRYLT 450 (805)
Q Consensus 375 ~~~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l----~e~G~~~gienyS~~L~ 450 (805)
..+. ..++..+ +. ..---++.+|+..++++. .+.....|...--.-+
T Consensus 361 -------------~~~~--------~~e~v~~---Lh----~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~- 411 (971)
T KOG0385 361 -------------NCEG--------DQELVSR---LH----KVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKW- 411 (971)
T ss_pred -------------CCCC--------CHHHHHH---HH----HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH-
T ss_conf -------------4335--------5899999---99----86638999998887874189753267860650889999-
Q ss_pred CCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 44655562023302654421321012344754454324565413332357665544432221110100121555454446
Q gi|254780991|r 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530 (805)
Q Consensus 451 ~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~sa 530 (805)
. ..++. ..++.+.+-..++..| |.+----| .-+||+|.-|+. +
T Consensus 412 --------------Y--~~iL~-----kdl~~~n~~~~~~k~k---L~NI~mQL-RKccnHPYLF~g------------~ 454 (971)
T KOG0385 412 --------------Y--KAILM-----KDLDALNGEGKGEKTK---LQNIMMQL-RKCCNHPYLFDG------------A 454 (971)
T ss_pred --------------H--HHHHH-----HCCHHHCCCCCCCHHH---HHHHHHHH-HHHCCCCCCCCC------------C
T ss_conf --------------9--99996-----1137542666320378---99999999-974699641488------------8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 86754201322002343201244677200001331016889999998630232124662147899999999863596687
Q gi|254780991|r 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610 (805)
Q Consensus 531 tPg~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~ 610 (805)
-||+.- ..|.. +-...|.+--|-.-+.+....|.|||+|.---+|-+-|-.|+.-+++.--
T Consensus 455 ePg~py-----------------ttdeh--Lv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~yc 515 (971)
T KOG0385 455 EPGPPY-----------------TTDEH--LVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYC 515 (971)
T ss_pred CCCCCC-----------------CCCCH--HHHCCCCEEHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 889998-----------------86217--87547611169988899984897699826988899999999875175268
Q ss_pred ECCCCCCHHHHHHHHHHHHCCC---CCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEE
Q ss_conf 3257645789999999973189---869998458753578777117999628856744460137766543127-998669
Q gi|254780991|r 611 YMHSEVKTLERIEIIRDLRLGK---FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKV 686 (805)
Q Consensus 611 ~~h~~~~~~~r~~il~~~~~g~---~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~ 686 (805)
-+||...-.+|...++.|..-. +=.|+.|---.=|+.+-....|++||-|- +++.=.|..-||-| |..-.|
T Consensus 516 RiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDW-----NPQ~DLQAmDRaHRIGQ~K~V 590 (971)
T KOG0385 516 RLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDW-----NPQVDLQAMDRAHRIGQKKPV 590 (971)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCC-----CCHHHHHHHHHHHHCCCCCCE
T ss_conf 723888707899999863899762589998504666630222364799966899-----821437889988860787715
Q ss_pred EEE
Q ss_conf 998
Q gi|254780991|r 687 ILY 689 (805)
Q Consensus 687 il~ 689 (805)
..|
T Consensus 591 ~V~ 593 (971)
T KOG0385 591 VVY 593 (971)
T ss_pred EEE
T ss_conf 999
No 128
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.13 E-value=3.3e-05 Score=57.50 Aligned_cols=140 Identities=17% Similarity=0.212 Sum_probs=100.1
Q ss_pred CEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 00013310168899999986302321246621478999999998635966873257645789999999973189869998
Q gi|254780991|r 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638 (805)
Q Consensus 559 ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvg 638 (805)
..-+.......-++.+|+.+-.+|.-+||+|..-...|.|++.|...||.-..+...-...+-+.|-..=+.|. |-|+
T Consensus 406 ~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~~ga--VTiA 483 (822)
T COG0653 406 LVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQPGA--VTIA 483 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEECCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCCCCC--CCCC
T ss_conf 00352798899999999999965998897673142252677899864997404404367999998761278886--6316
Q ss_pred HHHHHCCCCCCCCCEEE-EECCC---CCCCCCCHHHH--HHHHHHHCC-CCCCEEEEEECCCCHHHHHH
Q ss_conf 45875357877711799-96288---56744460137--766543127-99866999824898899999
Q gi|254780991|r 639 INLLREGLDIPECGLVA-ILDAD---KEGFLRSKTSL--IQTIGRAAR-NVNSKVILYADTITKSIQLA 700 (805)
Q Consensus 639 t~~~akGlD~p~v~lV~-i~dAD---~~~f~~~~~~~--~q~~GRagR-~~~G~~il~ad~~t~~~~~a 700 (805)
|||+.+|-||---.-+. |.++- .-|--+.|.-. -|.=||+|| |.+|..-+|....+.-|.+.
T Consensus 484 TNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~L~r~F 552 (822)
T COG0653 484 TNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDDLMRRF 552 (822)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 532467752036897789997078568732542156777775045556899643310232389999873
No 129
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.99 E-value=0.0023 Score=43.75 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHCCC-----CEEEEEEECCCCHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHHHCCCCE
Q ss_conf 43899999999887397-----337998633764699999999971-----99789993163468999999998678983
Q gi|254780991|r 152 DQPAAIAQLLKGIHSRE-----KVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~-----~~qlL~GVTGSGKTevya~lI~~~-----gr~aLvLvPei~La~QL~~rfk~~Fp~n~ 221 (805)
-|..|++..+..+.... +--+.|--||||||.+|+.+.... .-.++++|-=.-|-.|+.+.|.++-....
T Consensus 252 ~q~~a~~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTltm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~ 331 (962)
T COG0610 252 AQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF 331 (962)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999712678777238984069837899999999998365999699996728899999999999887632
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC-CCCEEEECCHHH----HCCC-CCHHH-HHCCE
Q ss_conf 89986213444421015554321022103588999999999999854-998499827789----6168-98347-72257
Q gi|254780991|r 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSC----IYGI-GSVES-YSQMI 294 (805)
Q Consensus 222 V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~-~~~~IVVgsrSA----Ifgl-~~P~~-~lglI 294 (805)
..- . + +-.+..+.+++ +...|||.|.-= +-.. ..... .-=.+
T Consensus 332 ~~~-~-------------------------~-----~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivv 380 (962)
T COG0610 332 NDP-K-------------------------A-----ESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVV 380 (962)
T ss_pred CCC-C-------------------------C-----CCHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCCCCCCCEEE
T ss_conf 044-4-------------------------4-----57999999986589848999710264333333200047876799
Q ss_pred EEEECCCCC
Q ss_conf 999419811
Q gi|254780991|r 295 VQLKIGDSV 303 (805)
Q Consensus 295 IvdEehd~~ 303 (805)
|+||.|=+-
T Consensus 381 I~DEaHRSQ 389 (962)
T COG0610 381 IIDEAHRSQ 389 (962)
T ss_pred EEECCCCCC
T ss_conf 986401035
No 130
>pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Probab=97.94 E-value=0.00048 Score=48.84 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH------CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 389999999988739733799863376469999999997------19978999316346899999999867898389986
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA------MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~------~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~ 226 (805)
|-.+++=+....+.| +-.+|-=-.|-|||...+.+|.. ..+++||++|. +|..|=..+++.++|+..+..++
T Consensus 2 Q~~gv~wl~~~~~~~-~ggiLaDeMGLGKTiq~ia~l~~~~~~~~~~~~~LIV~P~-sl~~~W~~Ei~~~~~~~~~~~~~ 79 (295)
T pfam00176 2 QLEGVNWLISLYNNG-LGGILADEMGLGKTLQTISLLAYLKELKPLAGPHLVVCPL-STLDNWLNEFEKWAPDLNIVVYY 79 (295)
T ss_pred HHHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 788999999987279-9989722787579999999999999838899988999757-88876788999867997079998
Q ss_pred ECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHH-HCCCCEEEECCHHHHCCCCCHHH--HHCCEEEEECCCC
Q ss_conf 2134444210155543210221035889999999999998-54998499827789616898347--7225799941981
Q gi|254780991|r 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL-LERNDCIVVSSVSCIYGIGSVES--YSQMIVQLKIGDS 302 (805)
Q Consensus 227 S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l-~~~~~~IVVgsrSAIfgl~~P~~--~lglIIvdEehd~ 302 (805)
.+.+ .|...++.. ......|||.+...+-....++. .-..+|+||.|--
T Consensus 80 ~~~~---------------------------~r~~~~~~~~~~~~~~ivitsY~~~~~~~~~l~~~~w~~vI~DEaH~i 131 (295)
T pfam00176 80 GDGD---------------------------SRSELLRNVLRTGKFDVLITSYEYIRRDKDELHKANWRYVILDEGHRI 131 (295)
T ss_pred ECHH---------------------------HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 4707---------------------------689998867741688599930999997599984087658998762012
No 131
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.85 E-value=7.5e-05 Score=54.85 Aligned_cols=110 Identities=22% Similarity=0.383 Sum_probs=90.0
Q ss_pred HHHHHHHCCCCCCCCCHH----HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHH-HHHCCCCC
Q ss_conf 999863023212466214----7899999999863596687325764578999999997318986999845-87535787
Q gi|254780991|r 574 EINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGLDI 648 (805)
Q Consensus 574 ei~~~~~~~~R~l~~~~t----kr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~-~~akGlD~ 648 (805)
.+...+..||.+..-+-| +.+++.+.+.|+..+|.+..|-|..++.+|.++++.+..|+++++|||. ++.+..||
T Consensus 348 a~l~~i~~GYQ~ALMAPTEiLA~QHy~~~~~~l~p~~~~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGTHALiqe~vef 427 (721)
T TIGR00643 348 AMLAAIESGYQVALMAPTEILAEQHYDSLRNLLAPLGIEVALLTGSLKGKQRKELLETIASGEIHLVVGTHALIQEKVEF 427 (721)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
T ss_conf 99999846980999177689999999999996235485788861566787899999998639520573313554521443
Q ss_pred CCCCEEEEECCCCCCCCCCHHH--------HHHHHHHHC--CCCCCEEE-EEECCC
Q ss_conf 7711799962885674446013--------776654312--79986699-982489
Q gi|254780991|r 649 PECGLVAILDADKEGFLRSKTS--------LIQTIGRAA--RNVNSKVI-LYADTI 693 (805)
Q Consensus 649 p~v~lV~i~dAD~~~f~~~~~~--------~~q~~GRag--R~~~G~~i-l~ad~~ 693 (805)
.+..||+| ||+- -.--=|..+ -|..=+++ |-|++|
T Consensus 428 ~~L~lVIi----------DEQHRFGV~QR~~L~~KG~~~~~~G~~PH~L~MtATPI 473 (721)
T TIGR00643 428 KRLGLVII----------DEQHRFGVEQRKKLREKGQEGSMIGFAPHVLVMTATPI 473 (721)
T ss_pred HCCCEEEE----------ECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
T ss_conf 14774899----------32335607899999986220688677777646637881
No 132
>KOG0391 consensus
Probab=97.83 E-value=0.002 Score=44.13 Aligned_cols=133 Identities=14% Similarity=0.207 Sum_probs=107.0
Q ss_pred HHHCCCCCCCCCCEECCCC-CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Q ss_conf 3201244677200001331-016889999998630232124662147899999999863596687325764578999999
Q gi|254780991|r 547 QIIRPTGLVDPPVEIRSAR-TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625 (805)
Q Consensus 547 qi~rptg~idp~ieir~~~-~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il 625 (805)
|+.-+.-+-||+...--++ |....|---.++....|.|+|+||--.+|-+-|-.+|.-.|+.-+-+|+..+-.+|..++
T Consensus 1240 q~~~~r~lqFPelrLiQyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLEqFLnyHgylY~RLDg~t~vEqRQaLm 1319 (1958)
T KOG0391 1240 QTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALM 1319 (1958)
T ss_pred HCCCHHHHCCCCHHEEECCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHH
T ss_conf 00222653385101000042059999999999985585488516889999999999854256899844875388999999
Q ss_pred HHHHCCC--CCEEEEHHHHHCCCCCCCCCEEEEECCC-CCCCCCCHHHHHHHHHHHC
Q ss_conf 9973189--8699984587535787771179996288-5674446013776654312
Q gi|254780991|r 626 RDLRLGK--FDVLVGINLLREGLDIPECGLVAILDAD-KEGFLRSKTSLIQTIGRAA 679 (805)
Q Consensus 626 ~~~~~g~--~diLvgt~~~akGlD~p~v~lV~i~dAD-~~~f~~~~~~~~q~~GRag 679 (805)
+.|.... +-.+..|--=.-|+.+-+-.-|+-||-| +|-.-+--..-.||||++-
T Consensus 1320 erFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQaQDrChRIGqtR 1376 (1958)
T KOG0391 1320 ERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTR 1376 (1958)
T ss_pred HHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 973678716999985267864201346745898458888013268898888745734
No 133
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=97.80 E-value=0.00072 Score=47.51 Aligned_cols=145 Identities=21% Similarity=0.234 Sum_probs=93.2
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCC--CEEEEECC-------HHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 9999988739733799863376469999999997199--78999316-------34689999999986789838998621
Q gi|254780991|r 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPN-------KILAAQLYSEFKNFFPHNAVEYFVSY 228 (805)
Q Consensus 158 ~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr--~aLvLvPe-------i~La~QL~~rfk~~Fp~n~V~~f~S~ 228 (805)
+.|.++|.++ +..++-|=||||||==.=++==|+|+ .=|| .|. -|.|.-++++++.=.|+ .|.|-|=-
T Consensus 75 edI~~AI~~n-QVviiAGETGSGKTTQLPKICLELGrG~~GlI-GHTQPRRlAAR~VA~R~AeELgtplGe-~VGYkVRF 151 (1320)
T TIGR01967 75 EDIAKAIAEN-QVVIIAGETGSGKTTQLPKICLELGRGSRGLI-GHTQPRRLAARSVAERVAEELGTPLGE-LVGYKVRF 151 (1320)
T ss_pred HHHHHHHHHC-CEEEEECCCCCCCCCCCHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCEEEE
T ss_conf 9999999848-98999724487620232167775427876541-247146889999999999983889886-13203663
Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH--HHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHH
Q ss_conf 344442101555432102210358899999999999--985499849982778961689834772257999419811178
Q gi|254780991|r 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR--SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306 (805)
Q Consensus 229 ~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~--~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~ 306 (805)
.|-..++++| -=+||++=++.+. +.+++ -.-||+||-||.|
T Consensus 152 ~D~v~~~t~V-------------KLmTDGiLLAE~Q~DRfL~~---------------------YDTIIIDEAHERS--- 194 (1320)
T TIGR01967 152 EDQVSSNTLV-------------KLMTDGILLAETQQDRFLER---------------------YDTIIIDEAHERS--- 194 (1320)
T ss_pred CCCCCCCCEE-------------EEHHHHHHHHHHHHHHHHHH---------------------CCCEEECCHHHHH---
T ss_conf 1426885436-------------30322358998520022210---------------------6733651123112---
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHCCCC---EEEECCCCCHHHHHHHHC
Q ss_conf 753234311765633877545331872---478317888778887310
Q gi|254780991|r 307 ELLSSLVKQQYKRQDIGIIRGTFRVCG---DSIEIFPSHLEDVAWRVS 351 (805)
Q Consensus 307 ~~~~~l~~~~Y~R~D~a~~RG~f~~rg---~ILdsatps~Es~~~Rie 351 (805)
..-.==+||=+. =...|| +|+-|||-..|-|.-..+
T Consensus 195 --LNIDFLLGYLK~-------lL~rRPDLKiIITSATID~ERFs~HFn 233 (1320)
T TIGR01967 195 --LNIDFLLGYLKQ-------LLPRRPDLKIIITSATIDPERFSRHFN 233 (1320)
T ss_pred --HHHHHHHHHHHH-------HCCCCCCCCEEEECCCCCHHHHHHHHC
T ss_conf --338899988876-------326688652574002357446878622
No 134
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.78 E-value=0.00032 Score=50.16 Aligned_cols=87 Identities=26% Similarity=0.393 Sum_probs=74.2
Q ss_pred HHHHHHHHHCCCCCCCCCHH----HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHH-HHHCCC
Q ss_conf 99999863023212466214----7899999999863596687325764578999999997318986999845-875357
Q gi|254780991|r 572 YDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646 (805)
Q Consensus 572 ~~ei~~~~~~~~R~l~~~~t----kr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~-~~akGl 646 (805)
+-.+-..+..|+.+.+-+-| +...+.+.++|+..++++.-+.|..++.+|.+++.++..|++||+|||. ++.+++
T Consensus 296 ~~a~~~~~~~g~q~a~maPTeiLa~Qh~~~~~~~~~~~~i~v~lltg~~~~~~~~~~~~~~~~g~~~i~iGTHal~~~~v 375 (677)
T PRK10917 296 ALAALAAIEAGYQAALMAPTEILAEQHYRNLKKWLEPLGIRVALLTGSLKGKERREILEALASGEADIVIGTHALIQDDV 375 (677)
T ss_pred HHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHCCC
T ss_conf 99999999819948998767999999999999877634988998407741778999999985799778973078773556
Q ss_pred CCCCCCEEEEEC
Q ss_conf 877711799962
Q gi|254780991|r 647 DIPECGLVAILD 658 (805)
Q Consensus 647 D~p~v~lV~i~d 658 (805)
.|.+..||+|=.
T Consensus 376 ~f~~LglvviDE 387 (677)
T PRK10917 376 EFHNLGLVIIDE 387 (677)
T ss_pred CCCCCCEEEECH
T ss_conf 446665699530
No 135
>KOG0950 consensus
Probab=97.67 E-value=0.00026 Score=50.87 Aligned_cols=94 Identities=26% Similarity=0.324 Sum_probs=71.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHH-HHHHHHHHHCC-CCC
Q ss_conf 9668732576457899999999731898699984587535787771179996288567444601-37766543127-998
Q gi|254780991|r 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT-SLIQTIGRAAR-NVN 683 (805)
Q Consensus 606 ~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~-~~~q~~GRagR-~~~ 683 (805)
-..+.|.|+..+..+|+.|=..||.|.+.|+++|..++-|...|-.... +-|-.-|-..-.+ .|-|++||||| |.+
T Consensus 522 ~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVI--iraP~~g~~~l~~~~YkQM~GRAGR~gid 599 (1008)
T KOG0950 522 PYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVI--IRAPYVGREFLTRLEYKQMVGRAGRTGID 599 (1008)
T ss_pred CCCCEECCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCEEE--EECCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 0353303444650068889999974676999943446406868751158--74775462300024677653020003346
Q ss_pred --CEEEEEECCCCHHHHHHH
Q ss_conf --669998248988999999
Q gi|254780991|r 684 --SKVILYADTITKSIQLAI 701 (805)
Q Consensus 684 --G~~il~ad~~t~~~~~ai 701 (805)
|..|+-...-...+.+.+
T Consensus 600 T~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950 600 TLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred CCCCEEEEEECCCHHHHHHH
T ss_conf 57655898503335677888
No 136
>KOG4150 consensus
Probab=97.67 E-value=0.00031 Score=50.20 Aligned_cols=114 Identities=26% Similarity=0.283 Sum_probs=83.1
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHH----HHHCC----CEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCC
Q ss_conf 98630232124662147899999999----86359----66873257645789999999973189869998458753578
Q gi|254780991|r 576 NLAAQQGLRILLTVLTKRMAEDLTEY----LYERN----IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647 (805)
Q Consensus 576 ~~~~~~~~R~l~~~~tkr~~e~l~~~----~~~~~----i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD 647 (805)
.+.+..+.|+..|+-..|..|-|-.. |.+.| -.++...|.-.+..|.+|-.++-.|+.--+|+||-+.-|+|
T Consensus 519 ~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGID 598 (1034)
T KOG4150 519 AEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGID 598 (1034)
T ss_pred HHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEEECCHHHHCCC
T ss_conf 99997187389963289899999999999998744789999986147753556777788851782689985360744424
Q ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCC--EEEEEECCCC
Q ss_conf 777117999628856744460137766543127-9986--6999824898
Q gi|254780991|r 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNS--KVILYADTIT 694 (805)
Q Consensus 648 ~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G--~~il~ad~~t 694 (805)
|....-|..+. ||-|..-|-|-+||||| |.+. .+|.+..+++
T Consensus 599 IG~LDAVl~~G-----FP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVD 643 (1034)
T KOG4150 599 IGHLDAVLHLG-----FPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVD 643 (1034)
T ss_pred CCCCCEEEECC-----CCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCH
T ss_conf 35643689826-----8506778998721101568984489997427612
No 137
>KOG0386 consensus
Probab=97.64 E-value=0.0077 Score=39.81 Aligned_cols=409 Identities=17% Similarity=0.190 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH------HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 38999999998873973379986337646999999999------719978999316346899999999867898389986
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE------AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~------~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~ 226 (805)
|-.-++=.+ ++-++.--..|--=+|=|||---+.+|. +...|-||+||.-+|..=. .+|--+-|. |.- +
T Consensus 399 Ql~GLqWmV-SLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~-~Ef~kWaPS--v~~-i 473 (1157)
T KOG0386 399 QLHGLQWMV-SLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWS-SEFPKWAPS--VQK-I 473 (1157)
T ss_pred HHHHHHHHH-HCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCH-HHCCCCCCC--EEE-E
T ss_conf 453157776-31589824332001044148899999999999705679838954354567712-202434665--135-6
Q ss_pred ECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHH-----CCEEEEECCC
Q ss_conf 21344442101555432102210358899999999999985499849982778961689834772-----2579994198
Q gi|254780991|r 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS-----QMIVQLKIGD 301 (805)
Q Consensus 227 S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~l-----glIIvdEehd 301 (805)
+|- + .-.+|..-...++.|+.-|++.++--|- -+-..| ..+|+||-|.
T Consensus 474 ~Yk---G---------------------tp~~R~~l~~qir~gKFnVLlTtyEyii---kdk~lLsKI~W~yMIIDEGHR 526 (1157)
T KOG0386 474 QYK---G---------------------TPQQRSGLTKQQRHGKFNVLLTTYEYII---KDKALLSKISWKYMIIDEGHR 526 (1157)
T ss_pred EEE---C---------------------CHHHHHHHHHHHHCCCCEEEEEEHHHHC---CCHHHHHCCCCCCEEECCCCC
T ss_conf 541---7---------------------8888866789886001103420087753---799998446986356322222
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHH--HHHCCCCCCHHHHHCCCCCCCCHHHHCCCC--
Q ss_conf 1117875323431176563387754533187247831788877888--731044420022210166640011100001--
Q gi|254780991|r 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA--WRVSMFGNDIEEISEFYPLTGQKIRNVETI-- 377 (805)
Q Consensus 302 ~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~--~Rie~f~deIe~I~~fDplT~~~~~~~~~~-- 377 (805)
-.+......+-..-+|+..-.-+.- .||.-...+ |.+- .=++.+| ..+...+..-
T Consensus 527 mKNa~~KLt~~L~t~y~~q~RLLLT------------GTPLQN~LpELWaLL--NFlLP~I-------FnS~~~FeqWFN 585 (1157)
T KOG0386 527 MKNAICKLTDTLNTHYRAQRRLLLT------------GTPLQNNLPELWALL--NFLLPNI-------FNSCKAFEQWFN 585 (1157)
T ss_pred CCCHHHHHHHHHHCCCCCHHHHHHC------------CCHHHHCCHHHHHHH--HHHCCCH-------HHHHHHHHHHHH
T ss_conf 4512557887750255212156532------------883222117789999--8763521-------104757989861
Q ss_pred CCHHHHH--CCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC
Q ss_conf 0000000--02563678875455899899899-88754433211001244447777533211201451011333114465
Q gi|254780991|r 378 KIYANSH--YVTPRPTLNTAMKYIKEELKMRL-IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454 (805)
Q Consensus 378 ~i~Pa~~--~v~~~e~l~~a~~~i~~el~~rl-~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ 454 (805)
..|.... .-+..+... .|...+..-+ -++....+...-+.|-.+++..+ .|..- .++.
T Consensus 586 ~PFantGek~eLteEEtl----LIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~vi-KC~mS-------alQq------- 646 (1157)
T KOG0386 586 QPFANTGEKVELTEEETL----LIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVI-KCDMS-------ALQQ------- 646 (1157)
T ss_pred HHHHHCCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HEEHH-------HHHH-------
T ss_conf 266643873125522789----9999988766478887656777664734554763-02020-------5667-------
Q ss_pred CCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 55620233026544213210123447544543245654133323576655444322211101001215554544468675
Q gi|254780991|r 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534 (805)
Q Consensus 455 ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~ 534 (805)
.++...-+...+++|..+-... | .+|.+.-+-| ..+||+|.-|.+....+.
T Consensus 647 -----~lY~~m~~~g~l~~d~~~g~~g-----~-------k~L~N~imqL-RKiCNHP~lf~~ve~~~~----------- 697 (1157)
T KOG0386 647 -----SLYKQMQNKGQLLKDTAKGKKG-----Y-------KPLFNTIMQL-RKLCNHPYLFANVENSYT----------- 697 (1157)
T ss_pred -----HHHHHHHHCCCCCCCCHHCCCC-----C-------HHHHHHHHHH-HHHCCCCHHHHHHCCCCC-----------
T ss_conf -----6318888479887672100346-----4-------1154576999-985477215444303422-----------
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 42013220023432012446772000013310168899999986302321246621478999999998635966873257
Q gi|254780991|r 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614 (805)
Q Consensus 535 ~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~ 614 (805)
++...+ .+-...|..+.|-.-.-+..+.|.|+|.|.--.++-..+-.||.-.+++-.-+|+
T Consensus 698 ----------------~~~~~~---dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG 758 (1157)
T KOG0386 698 ----------------LHYDIK---DLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDG 758 (1157)
T ss_pred ----------------CCCCHH---HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
T ss_conf ----------------002705---7877314799997660887732760115777888899999998662421244158
Q ss_pred CCCHHHHHHHHHHHHCCCCCE---EEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEE
Q ss_conf 645789999999973189869---998458753578777117999628856744460137766543127-998669
Q gi|254780991|r 615 EVKTLERIEIIRDLRLGKFDV---LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKV 686 (805)
Q Consensus 615 ~~~~~~r~~il~~~~~g~~di---Lvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~ 686 (805)
..+..+|...|+.|..-.-++ |.-|---.-||..--..-|+|+|-|- +..--.|.--||-| |..-.|
T Consensus 759 ~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdw-----np~~d~qaqdrahrigq~~ev 829 (1157)
T KOG0386 759 QTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDW-----NPHQDLQAQDRAHRIGQKKEV 829 (1157)
T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHCCEEEEECCCC-----CCHHHHHHHHHHHHHHCHHHE
T ss_conf 76614689999971599986256433210255540321135278865888-----831679999999975021230
No 138
>KOG4439 consensus
Probab=97.58 E-value=0.0093 Score=39.18 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=78.1
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHC--CCCCEE-EEHHHHHCCCC
Q ss_conf 999999863023212466214789999999986359668732576457899999999731--898699-98458753578
Q gi|254780991|r 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL--GKFDVL-VGINLLREGLD 647 (805)
Q Consensus 571 l~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~--g~~diL-vgt~~~akGlD 647 (805)
.+++| ...+++.+.+..-=-.+-.-+...+...|..-..+|+.+...+|++++++|.. |...|+ +----=+=||.
T Consensus 737 ~le~i--~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLN 814 (901)
T KOG4439 737 ILETI--LTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLN 814 (901)
T ss_pred HHHHH--HHCCCCEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEE
T ss_conf 99988--6136650564267788887888887507713662057404067899999988604880599999706741352
Q ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEE
Q ss_conf 777117999628856744460137766543127-998669998
Q gi|254780991|r 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILY 689 (805)
Q Consensus 648 ~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ 689 (805)
+-+-.+++.+|. -=+...=-|..-|-=| |..-.|++|
T Consensus 815 L~GaNHlilvDl-----HWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439 815 LIGANHLILVDL-----HWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred ECCCCEEEEEEC-----CCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 035633899854-----66878889998999984266725899
No 139
>KOG0953 consensus
Probab=97.50 E-value=0.00087 Score=46.91 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=64.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHC--CCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCH----HHHHHHHHHHCC-C
Q ss_conf 8732576457899999999731--89869998458753578777117999628856744460----137766543127-9
Q gi|254780991|r 609 VRYMHSEVKTLERIEIIRDLRL--GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK----TSLIQTIGRAAR-N 681 (805)
Q Consensus 609 ~~~~h~~~~~~~r~~il~~~~~--g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~----~~~~q~~GRagR-~ 681 (805)
+..+-|.+...-|.+--..|.+ +++||||+||-+..||.+ ++.-|+-++.-|+.=+.-+ -..-|++||||| +
T Consensus 384 ~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~ 462 (700)
T KOG0953 384 CAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFG 462 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC-CEEEEEEEECCCCCCCCCEECCHHHHHHHHHCCCCCC
T ss_conf 489955899730688898737988762568862321455444-3117987503567766210256899998851015445
Q ss_pred C---CCEEEEEECCCCHHHHHHHH
Q ss_conf 9---86699982489889999999
Q gi|254780991|r 682 V---NSKVILYADTITKSIQLAID 702 (805)
Q Consensus 682 ~---~G~~il~ad~~t~~~~~ai~ 702 (805)
. +|.|-.+....-..+.+++.
T Consensus 463 s~~~~G~vTtl~~eDL~~L~~~l~ 486 (700)
T KOG0953 463 SKYPQGEVTTLHSEDLKLLKRILK 486 (700)
T ss_pred CCCCCCEEEEEEHHHHHHHHHHHH
T ss_conf 677674577741866999999984
No 140
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=97.48 E-value=0.0003 Score=50.33 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=7.1
Q ss_pred HHHHHCCCH----HHHCCC
Q ss_conf 999873960----320574
Q gi|254780991|r 107 ARLIQSDNP----LLKNGK 121 (805)
Q Consensus 107 ~~~~~~~~~----~~~~~~ 121 (805)
++||.+-+| ++|++.
T Consensus 75 ~nLIK~~kP~yNilLkDdK 93 (519)
T PRK12306 75 NTLIKKHQPKYNIDLKDSK 93 (519)
T ss_pred HHHHHHHCCCCCEECCCCC
T ss_conf 9998674898624336799
No 141
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=97.44 E-value=0.00041 Score=49.38 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=9.7
Q ss_pred HHHHHCCCH----HHHCCCC
Q ss_conf 999873960----3205740
Q gi|254780991|r 107 ARLIQSDNP----LLKNGKI 122 (805)
Q Consensus 107 ~~~~~~~~~----~~~~~~~ 122 (805)
+.||.+-+| ++|++..
T Consensus 83 ~~LIK~~kP~YNilLkDDK~ 102 (609)
T PRK00558 83 NNLIKKYKPRYNILLRDDKS 102 (609)
T ss_pred HHHHHHHCCCCCCCCCCCCC
T ss_conf 99986758985101247899
No 142
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.35 E-value=0.00099 Score=46.47 Aligned_cols=85 Identities=28% Similarity=0.445 Sum_probs=72.2
Q ss_pred HHHHHHHCCCCCCCCCHH----HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHH-HHHCCCCC
Q ss_conf 999863023212466214----7899999999863596687325764578999999997318986999845-87535787
Q gi|254780991|r 574 EINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGLDI 648 (805)
Q Consensus 574 ei~~~~~~~~R~l~~~~t----kr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~-~~akGlD~ 648 (805)
.+...+.+|+.+..-+-| +...+.+.+.|+..||.+..+-|.++..+|.+++.++.+|++||+|||. ++-...+|
T Consensus 303 aml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F 382 (677)
T COG1200 303 AMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEF 382 (677)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCEEE
T ss_conf 99999872881688663799999999999987665197489864466506799999987479989799722122045044
Q ss_pred CCCCEEEEEC
Q ss_conf 7711799962
Q gi|254780991|r 649 PECGLVAILD 658 (805)
Q Consensus 649 p~v~lV~i~d 658 (805)
.+..||+|=.
T Consensus 383 ~~LgLVIiDE 392 (677)
T COG1200 383 HNLGLVIIDE 392 (677)
T ss_pred CCEEEEEEEC
T ss_conf 2023899725
No 143
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.31 E-value=0.0018 Score=44.46 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=60.2
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHH-H---H-----CCCCEEEEECCHHHHHHHHHHH
Q ss_conf 75188888843899999999887397337998633764699999999-9---7-----1997899931634689999999
Q gi|254780991|r 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI-E---A-----MQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 143 l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI-~---~-----~gr~aLvLvPei~La~QL~~rf 213 (805)
...||+|-..|.+.++.+.+++++| +..+|-.=||+|||..|+-.. + . .++.+++++..++...|.++++
T Consensus 3 ~~FPy~py~~Q~e~m~~v~~~l~~~-~~~llEaPTGtGKTlalL~~al~~~~~~~~~~~~~ki~~~t~t~~~~~~~~~el 81 (289)
T smart00489 3 FYFPYEPYPIQYEFMEELKRVLDRG-KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 2789999989999999999999749-979998999651899999999999996701024561687615378899999999
Q ss_pred HHHC
Q ss_conf 9867
Q gi|254780991|r 214 KNFF 217 (805)
Q Consensus 214 k~~F 217 (805)
+...
T Consensus 82 r~~~ 85 (289)
T smart00489 82 RKLM 85 (289)
T ss_pred HHHC
T ss_conf 8632
No 144
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.31 E-value=0.0018 Score=44.46 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=60.2
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHH-H---H-----CCCCEEEEECCHHHHHHHHHHH
Q ss_conf 75188888843899999999887397337998633764699999999-9---7-----1997899931634689999999
Q gi|254780991|r 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI-E---A-----MQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 143 l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI-~---~-----~gr~aLvLvPei~La~QL~~rf 213 (805)
...||+|-..|.+.++.+.+++++| +..+|-.=||+|||..|+-.. + . .++.+++++..++...|.++++
T Consensus 3 ~~FPy~py~~Q~e~m~~v~~~l~~~-~~~llEaPTGtGKTlalL~~al~~~~~~~~~~~~~ki~~~t~t~~~~~~~~~el 81 (289)
T smart00488 3 FYFPYEPYPIQYEFMEELKRVLDRG-KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 2789999989999999999999749-979998999651899999999999996701024561687615378899999999
Q ss_pred HHHC
Q ss_conf 9867
Q gi|254780991|r 214 KNFF 217 (805)
Q Consensus 214 k~~F 217 (805)
+...
T Consensus 82 r~~~ 85 (289)
T smart00488 82 RKLM 85 (289)
T ss_pred HHHC
T ss_conf 8632
No 145
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.27 E-value=0.012 Score=38.38 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=105.5
Q ss_pred CHHHHHHHHH-HHHHHCCC--CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCC-CCC-EEEEHH
Q ss_conf 0168899999-98630232--124662147899999999863596687325764578999999997318-986-999845
Q gi|254780991|r 566 TQVEDVYDEI-NLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG-KFD-VLVGIN 640 (805)
Q Consensus 566 ~qvddl~~ei-~~~~~~~~--R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g-~~d-iLvgt~ 640 (805)
+.+..+.+-+ ......+. |+++++....+.+-+..++...++....+||......|..++.+|..+ ... .|+-+.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~vflls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEHH
T ss_conf 05689999988899862777234888666059999999998558757987378752128899999864667757997530
Q ss_pred HHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 8753578777117999628856744460137766543127-99866999824898899999998788
Q gi|254780991|r 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTR 706 (805)
Q Consensus 641 ~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~r 706 (805)
-..-|+..-.-..|+++|.|- +.....|.+.||-| |....|-.|.-...+..+..|-+...
T Consensus 772 agg~glnLt~a~~vi~~d~~w-----Np~~e~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~ 833 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWW-----NPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQE 833 (866)
T ss_pred CCCCCCCCCCCCEEEECCCCC-----CHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHH
T ss_conf 057661214565246607763-----66799999987876078015999984113739999999998
No 146
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=97.25 E-value=0.00082 Score=47.09 Aligned_cols=45 Identities=38% Similarity=0.519 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 889999999999999999741489999999999999999733222359
Q gi|254780991|r 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805 (805)
Q Consensus 758 ~~~~~~i~~l~~~m~~aa~~l~fE~Aa~lRD~i~~l~~~~~~~~~~~~ 805 (805)
.+.+..|..|.+...+....-+||+||.+||+|+.||++ .+.||+
T Consensus 132 i~~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k---~~~dd~ 176 (176)
T COG3880 132 INPKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAK---NGGDDS 176 (176)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCC
T ss_conf 238899999999999999888889999999999998854---378999
No 147
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=97.23 E-value=0.00068 Score=47.70 Aligned_cols=70 Identities=21% Similarity=0.231 Sum_probs=44.2
Q ss_pred HHHHHHHHHCCCCCEEEEHHHHHCCCCC-CCCCEEEEECCCC-CCCCCCHHHHHHHHHHHCC---CC--CCEEEEEECC
Q ss_conf 9999999731898699984587535787-7711799962885-6744460137766543127---99--8669998248
Q gi|254780991|r 621 RIEIIRDLRLGKFDVLVGINLLREGLDI-PECGLVAILDADK-EGFLRSKTSLIQTIGRAAR---NV--NSKVILYADT 692 (805)
Q Consensus 621 r~~il~~~~~g~~diLvgt~~~akGlD~-p~v~lV~i~dAD~-~~f~~~~~~~~q~~GRagR---~~--~G~~il~ad~ 692 (805)
.++++.....-.-+.|..-+++.+|++= .+|++|. .-.. .-.-.|..+|+|-+|||-| |. .|-.|.+.|.
T Consensus 521 ydr~i~e~~~~~~~~L~~e~~~~~G~~~~~~~~~~~--~e~~~ylvvpD~~tYiQASGRTSRl~aGGlTkGlS~Vl~dd 597 (1843)
T TIGR01054 521 YDRIIEEVLKFLREALKREDVLEKGIKESEDLSLVA--KEGKLYLVVPDVKTYIQASGRTSRLYAGGLTKGLSVVLVDD 597 (1843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC--CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCEEEEECC
T ss_conf 568999888778887752025532654103447861--79725999668774424674156655423230534899654
No 148
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.00022 Score=51.36 Aligned_cols=75 Identities=16% Similarity=0.037 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10012444477775332112014510113331144655562023302654421321012344754454324565413332
Q gi|254780991|r 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497 (805)
Q Consensus 418 ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l 497 (805)
.+..|.+.+...++..++...+.++++||+.+.|+.|
T Consensus 405 lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~C------------------------------------------- 441 (730)
T COG1198 405 LSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDC------------------------------------------- 441 (730)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCC-------------------------------------------
T ss_conf 7999999999998429868999716776540042568-------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 35766554443222111010012155545444686754201
Q gi|254780991|r 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538 (805)
Q Consensus 498 ~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e 538 (805)
|+...|..|+.+|+||.......||.|.+..|-+..|.
T Consensus 442 ---g~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp 479 (730)
T COG1198 442 ---GYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCP 479 (730)
T ss_pred ---CCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCC
T ss_conf ---98024899995127864798067077999899887798
No 149
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0015 Score=45.14 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHH-HHHHHHHCCCCCEEEEHHHHHCCCC
Q ss_conf 687325764578999-9999973189869998458753578
Q gi|254780991|r 608 RVRYMHSEVKTLERI-EIIRDLRLGKFDVLVGINLLREGLD 647 (805)
Q Consensus 608 ~~~~~h~~~~~~~r~-~il~~~~~g~~diLvgt~~~akGlD 647 (805)
...-+||+..|.... ++|+.+.-.- .+|| +|||-+
T Consensus 446 dli~iDGGkgQl~~a~~vl~~l~~~~--~vig---laK~~~ 481 (581)
T COG0322 446 DLILIDGGKGQLNAAKEVLKELGLDI--PVIG---LAKGEE 481 (581)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCC--CEEE---EEECCC
T ss_conf 77999697889999999999759986--1799---971686
No 150
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=97.10 E-value=0.00056 Score=48.35 Aligned_cols=94 Identities=19% Similarity=0.295 Sum_probs=62.5
Q ss_pred CCEEEEECCCCCCCHHHHHHH----HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 754775188888843899999----999887397337-998633764699999999971997899931634689999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQ----LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~----L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
+.|....-|.|..+|....+. |++.+-+|+..+ +-||.||||||++|.--....+......-++.++.|....++
T Consensus 48 k~F~FD~vf~~~~~Q~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~l 127 (352)
T cd01364 48 KTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQL 127 (352)
T ss_pred EEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 03547868399999899999998999999977885599987788999349975676654444556777688499999999
Q ss_pred HHHCCCC--EEEEEEECCCCC
Q ss_conf 9867898--389986213444
Q gi|254780991|r 214 KNFFPHN--AVEYFVSYYDYY 232 (805)
Q Consensus 214 k~~Fp~n--~V~~f~S~~~~y 232 (805)
-...... ...+.+||+-.|
T Consensus 128 f~~~~~~~~~~~v~vS~~EIY 148 (352)
T cd01364 128 FEKLESQNTEYSVKVSYLELY 148 (352)
T ss_pred HHHHHHCCCCEEEEEEEEEEE
T ss_conf 999984598279999999986
No 151
>pfam02151 UVR UvrB/uvrC motif.
Probab=97.09 E-value=0.00085 Score=46.98 Aligned_cols=34 Identities=41% Similarity=0.647 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999974148999999999999999
Q gi|254780991|r 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795 (805)
Q Consensus 762 ~~i~~l~~~m~~aa~~l~fE~Aa~lRD~i~~l~~ 795 (805)
..|..++.+|.+|+++++||.||.+||+|..|++
T Consensus 2 ~~i~~l~~~m~~A~~~~dfE~Aa~lRD~i~~l~~ 35 (36)
T pfam02151 2 KLIKELEEEMEEAAEEEDFEKAAKLRDQIKALEK 35 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6889999999999997538999998999999752
No 152
>PRK09401 reverse gyrase; Reviewed
Probab=97.02 E-value=0.0024 Score=43.61 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=54.0
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCC-----HHHHHHHHHHHCCCCEEEEECC---HHHHHHHHHHHHHHCC
Q ss_conf 8888843899999999887397337998633764-----6999999999719978999316---3468999999998678
Q gi|254780991|r 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG-----KTFTMAKVIEAMQRPAIVMAPN---KILAAQLYSEFKNFFP 218 (805)
Q Consensus 147 ~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSG-----KTevya~lI~~~gr~aLvLvPe---i~La~QL~~rfk~~Fp 218 (805)
-.|.|.-+....+|. |++-|.....|--|+-+= .-+..+.+++++|.-.||.||. +-.+-.++..+++. |
T Consensus 277 ~~prg~r~~lfreLl-gFevg~~~~~lRni~D~y~~~~~~~~~~~e~v~~lG~GgLifv~~~~g~e~~~~~~~~l~~~-g 354 (1176)
T PRK09401 277 GRPRGIRIKLFRELL-GFEVGRPRFYLRNIVDVYIEPEDLVEKLVELVKRLGDGGLVFVPTDYGKEYAEELKEYLESH-G 354 (1176)
T ss_pred CCCCCCHHHHHHHHH-CCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHC-C
T ss_conf 788885389999982-98678864230212577605766889999999984895499976765889999999999976-9
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHH
Q ss_conf 9838998621344442101555432102210358899999999999985499849982778
Q gi|254780991|r 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 (805)
Q Consensus 219 ~n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrS 279 (805)
- .++.+++. +-.......+|+..+.||.-|
T Consensus 355 ~-~a~~~~~~------------------------------~~~~le~f~~Ge~dvLvG~as 384 (1176)
T PRK09401 355 I-KAEAYSGR------------------------------KKEFLEKFEEGEIDVLIGVAS 384 (1176)
T ss_pred C-EEEEEECC------------------------------CHHHHHHHHCCCCCEEEEECC
T ss_conf 6-69996058------------------------------866888975788648999701
No 153
>KOG0392 consensus
Probab=96.98 E-value=0.039 Score=34.55 Aligned_cols=412 Identities=19% Similarity=0.189 Sum_probs=196.4
Q ss_pred EEEEEE----CCCCHHHHHHHHHH-----H-------CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf 799863----37646999999999-----7-------1997899931634689999999986789838998621344442
Q gi|254780991|r 171 QLLLGV----TGSGKTFTMAKVIE-----A-------MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 (805)
Q Consensus 171 qlL~GV----TGSGKTevya~lI~-----~-------~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqp 234 (805)
.=|||+ -|=|||.--+-+++ + ...|.||+.|- +||..-..++..|||--.|..||. |
T Consensus 993 y~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~pfL~v~~yvg------~ 1065 (1549)
T KOG0392 993 YKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFFPFLKVLQYVG------P 1065 (1549)
T ss_pred HCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCC-HHHHHHHHHHHHHCCHHHHHHHCC------C
T ss_conf 333545421346327899999997888750246601135875898870-011489999987563012343137------7
Q ss_pred CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCC--CHHHHHCCEEEEECCCCCCHHHHHHHH
Q ss_conf 101555432102210358899999999999985499849982778961689--834772257999419811178753234
Q gi|254780991|r 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG--SVESYSQMIVQLKIGDSVEQKELLSSL 312 (805)
Q Consensus 235 Eay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~--~P~~~lglIIvdEehd~~~~~~~~~~l 312 (805)
++ .|...-. .-.+.-|+|.|.--+-.=. .-...-..+|.||=|---+.+. .+
T Consensus 1066 p~---------------------~r~~lR~--q~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~kt---kl 1119 (1549)
T KOG0392 1066 PA---------------------ERRELRD--QYKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKT---KL 1119 (1549)
T ss_pred HH---------------------HHHHHHH--HCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCCEECCHHH---HH
T ss_conf 58---------------------7777775--4366656996589988789999855222699407604211388---99
Q ss_pred HHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCC------CHHHHCCCCCCHHHHHCC
Q ss_conf 31176563387754533187247831788877888731044420022210166640------011100001000000002
Q gi|254780991|r 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG------QKIRNVETIKIYANSHYV 386 (805)
Q Consensus 313 ~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~------~~~~~~~~~~i~Pa~~~v 386 (805)
|.+ +-.-|+..+ ++=|.||--. +..|....||-+-. +.-...-.-.|.+.+.--
T Consensus 1120 ----~ka--vkqL~a~hR----LILSGTPIQN----------nvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K 1179 (1549)
T KOG0392 1120 ----TKA--VKQLRANHR----LILSGTPIQN----------NVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPK 1179 (1549)
T ss_pred ----HHH--HHHHHHCCE----EEEECCCCCC----------CHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf ----999--999764023----7740887666----------79999999998466656718889887555045423865
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCC
Q ss_conf 56367887545589989989988754433211001244447777533211201451011333114465556202330265
Q gi|254780991|r 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466 (805)
Q Consensus 387 ~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p 466 (805)
.+....+.+...++..-.+-+-+.....|.....-|-.++.+|. | |-|..-. --||..|-
T Consensus 1180 ~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDy-------y--------CeLs~lQ-----~kLY~df~ 1239 (1549)
T KOG0392 1180 SSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDY-------Y--------CELSPLQ-----KKLYRDFV 1239 (1549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHE-------E--------ECCCHHH-----HHHHHHHH
T ss_conf 56667876488999999988899999988888764885653310-------3--------4067899-----99999998
Q ss_pred CCC----EEEECCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCC-----HHHH-CCCCCCCCCCCC
Q ss_conf 442----132101234475445432456541333---235766554443222111010-----0121-555454446867
Q gi|254780991|r 467 EDS----LLFVDESHVTIPQISGMYRGDFHRKAT---LAEYGFRLPSCMDNRPLRFEE-----WNCL-RPTTIVVSATPG 533 (805)
Q Consensus 467 ~d~----ll~idesh~~~pqi~~~~~~d~~RK~~---l~~~gfrlp~~~~n~pl~f~e-----~~~~-~~~~~~~satPg 533 (805)
+.. -..+|++..+... + |.+ ..+|. .-+||+|.--.. +-.. -++....++.
T Consensus 1240 ~~~k~~~~~~~d~~~~S~gt-------~---~~HvFqaLqYl----rKLcnHpaLvlt~~hp~la~i~~~l~~~~~~L-- 1303 (1549)
T KOG0392 1240 KKAKQCVSSQIDGGEESLGT-------D---KTHVFQALQYL----RKLCNHPALVLTPVHPDLAAIVSHLAHFNSSL-- 1303 (1549)
T ss_pred HHHCCCCCCCCCCCHHCCCC-------C---HHHHHHHHHHH----HHHCCCCCEEECCCCCHHHHHHHHHHHHHHHH--
T ss_conf 87503520034643210575-------1---48899999999----98548964442777502999987887740147--
Q ss_pred CCCCHHHHH-HHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC---CCEE
Q ss_conf 542013220-023432012446772000013310168899999986302321246621478999999998635---9668
Q gi|254780991|r 534 SWELEQCQG-IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER---NIRV 609 (805)
Q Consensus 534 ~~e~e~~~~-~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~---~i~~ 609 (805)
..+.+++. ..-+|+...-|.-...+.-. ++-+ ...+.|+|+|+--|-|.+-+-+-|-.. .+.-
T Consensus 1304 -Hdi~hspKl~AL~qLL~eCGig~~~~~~~---g~~s---------~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVty 1370 (1549)
T KOG0392 1304 -HDIQHSPKLSALKQLLSECGIGNNSDSEV---GTPS---------DVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTY 1370 (1549)
T ss_pred -HHHHHCHHHHHHHHHHHHHCCCCCCCCCC---CCCC---------HHCCCEEEEEEEHHHHHHHHHHHHHHHHCCCEEE
T ss_conf -77653526789999999817898875333---6710---------2115516876407779999999986511475169
Q ss_pred EECCCCCCHHHHHHHHHHHHCC-CCCEEE-EHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEE
Q ss_conf 7325764578999999997318-986999-8458753578777117999628856744460137766543127-998669
Q gi|254780991|r 610 RYMHSEVKTLERIEIIRDLRLG-KFDVLV-GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKV 686 (805)
Q Consensus 610 ~~~h~~~~~~~r~~il~~~~~g-~~diLv-gt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~ 686 (805)
+-+||.+...+|.+|.++|..+ .||||+ .|++=.=||.+-+-.-|+-++-|=--++ + .|.+-||-| |.+-.|
T Consensus 1371 mRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMr-D----LQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392 1371 MRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR-D----LQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCHH-H----HHHHHHHHHHCCCEEE
T ss_conf 9734888907779999971689851389996200453224678755899726888324-5----7887788862673156
Q ss_pred EEE
Q ss_conf 998
Q gi|254780991|r 687 ILY 689 (805)
Q Consensus 687 il~ 689 (805)
=.|
T Consensus 1446 NVy 1448 (1549)
T KOG0392 1446 NVY 1448 (1549)
T ss_pred EEE
T ss_conf 666
No 154
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.95 E-value=0.0038 Score=42.07 Aligned_cols=66 Identities=27% Similarity=0.271 Sum_probs=45.9
Q ss_pred CHHHHHHHHHH------HHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC---CCCCEEE
Q ss_conf 57899999999------73189869998458753578777117999628856744460137766543127---9986699
Q gi|254780991|r 617 KTLERIEIIRD------LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVNSKVI 687 (805)
Q Consensus 617 ~~~~r~~il~~------~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR---~~~G~~i 687 (805)
...+-..||++ |... -.-+-.---|++|-|=|||=-.+-|. =-.|+.|=.|-+||-=| |.+|.-+
T Consensus 463 ~~~~i~~ILkdKEKLLSFd~p-lRFIFS~waLrEGWDNPNVFtIckL~-----~S~SeiSK~QeVGRGLRLaVNe~G~RV 536 (985)
T COG3587 463 IEDEIDLILKDKEKLLSFDEP-LRFIFSKWALREGWDNPNVFTICKLR-----SSGSEISKLQEVGRGLRLAVNENGERV 536 (985)
T ss_pred HHHHHHHHHHHHHHHCCCCCC-CEEEEEHHHHHHCCCCCCEEEEEEEC-----CCCCCHHHHHHHCCCEEEEECCCCCEE
T ss_conf 788999998557874356885-00122265776137899836899864-----887604788886345153234566600
Q ss_pred E
Q ss_conf 9
Q gi|254780991|r 688 L 688 (805)
Q Consensus 688 l 688 (805)
.
T Consensus 537 ~ 537 (985)
T COG3587 537 T 537 (985)
T ss_pred C
T ss_conf 1
No 155
>KOG1000 consensus
Probab=96.95 E-value=0.041 Score=34.38 Aligned_cols=120 Identities=14% Similarity=0.197 Sum_probs=94.8
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCC-CC-EEEEHHHHHCCCCCCCCCEEE
Q ss_conf 6302321246621478999999998635966873257645789999999973189-86-999845875357877711799
Q gi|254780991|r 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK-FD-VLVGINLLREGLDIPECGLVA 655 (805)
Q Consensus 578 ~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~-~d-iLvgt~~~akGlD~p~v~lV~ 655 (805)
....+.+.+||+--+.+-+-++.++.+.++.-.-+||......|.-..+.|...+ +. -++++.-..-||+|.--++|.
T Consensus 488 ~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VV 567 (689)
T KOG1000 488 PDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVV 567 (689)
T ss_pred CCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEECCCEEE
T ss_conf 56887359999414879999999998747975885698984347899987314631479999986314441465132589
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEE---EEE-CCCCHHHHHHHH
Q ss_conf 9628856744460137766543127-9986699---982-489889999999
Q gi|254780991|r 656 ILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVI---LYA-DTITKSIQLAID 702 (805)
Q Consensus 656 i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~i---l~a-d~~t~~~~~ai~ 702 (805)
-.. ++-+.-.|+|.--|+-| |...-|- +-| +.++.+|...+.
T Consensus 568 FaE-----L~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~ 614 (689)
T KOG1000 568 FAE-----LHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQ 614 (689)
T ss_pred EEE-----ECCCCCEEEECHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHH
T ss_conf 998-----23787547751465664056651138999954845777789999
No 156
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=96.90 E-value=0.0041 Score=41.89 Aligned_cols=83 Identities=23% Similarity=0.300 Sum_probs=59.1
Q ss_pred CCEEEEECCCCCCCHHHHHHHH----HHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 7547751888888438999999----99887397337-998633764699999999971997899931634689999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQL----LKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~L----~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
+.|....-|.|..+|.+-.+.+ ++.+-+|+..+ +-||-||||||++|.-- ..+.+|.|....++
T Consensus 55 ~~f~FD~vf~~~~tQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~-----------~~~~Giipr~~~~l 123 (345)
T cd01368 55 TKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGS-----------PGDGGILPRSLDVI 123 (345)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC-----------CCCCCHHHHHHHHH
T ss_conf 0657785639999989999998788999984887247999547889875242678-----------33332479999999
Q ss_pred HHHCCCCEEEEEEECCCCCCC
Q ss_conf 986789838998621344442
Q gi|254780991|r 214 KNFFPHNAVEYFVSYYDYYQP 234 (805)
Q Consensus 214 k~~Fp~n~V~~f~S~~~~yqp 234 (805)
-...++ ..+++||+-.|.-
T Consensus 124 f~~~~~--~~v~vS~~EIYne 142 (345)
T cd01368 124 FNSIGG--YSVFVSYVEIYNN 142 (345)
T ss_pred HHHHCC--EEEEEEEEEEECC
T ss_conf 875127--2899999985478
No 157
>PRK07883 hypothetical protein; Validated
Probab=96.83 E-value=0.0035 Score=42.35 Aligned_cols=37 Identities=35% Similarity=0.471 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999997414899999999999999997
Q gi|254780991|r 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797 (805)
Q Consensus 761 ~~~i~~l~~~m~~aa~~l~fE~Aa~lRD~i~~l~~~~ 797 (805)
...+..++.+|..+|.+++||+||++||+|..+....
T Consensus 412 ~~vl~~L~~rM~~aA~~~rFE~AA~lRDrl~Al~~~~ 448 (575)
T PRK07883 412 GAVLAALRRRIARLAAARRYEEAARLRDRLAALVRAL 448 (575)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999987465999999999999999999
No 158
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=96.82 E-value=0.0049 Score=41.24 Aligned_cols=90 Identities=22% Similarity=0.311 Sum_probs=59.7
Q ss_pred CCEEEEECCCCCCCHHHHHHH----HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 754775188888843899999----999887397337-998633764699999999971997899931634689999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQ----LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~----L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
+.|....=|.|...|.+..+. |++.+-+|+..+ +-||.||||||++|.--.. ...-.++.+|.|....++
T Consensus 40 ~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~~~-----~~~~~~~~Giipr~~~~l 114 (341)
T cd01372 40 KSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFT-----ASEDEEEVGIIPRAIQHI 114 (341)
T ss_pred CEEECCEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC-----CCCCCCCCCHHHHHHHHH
T ss_conf 268769775999998999999989999998677751699971478898644136778-----887755478789999999
Q ss_pred HHHCC---C-CEEEEEEECCCCCC
Q ss_conf 98678---9-83899862134444
Q gi|254780991|r 214 KNFFP---H-NAVEYFVSYYDYYQ 233 (805)
Q Consensus 214 k~~Fp---~-n~V~~f~S~~~~yq 233 (805)
-.... + ....+.+||+-.|.
T Consensus 115 f~~i~~~~~~~~~~v~~S~~EIYn 138 (341)
T cd01372 115 FKKIDEKKDEPDFQLKVSFLELYN 138 (341)
T ss_pred HHHHHHCCCCCEEEEEEEEEEEEC
T ss_conf 999972667835999999999989
No 159
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=96.82 E-value=0.0057 Score=40.76 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=44.2
Q ss_pred CEEEEEEECCCCHHHHHHHHHHH-----CCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 33799863376469999999997-----19978999316346899999999867898
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEA-----MQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~-----~gr~aLvLvPei~La~QL~~rfk~~Fp~n 220 (805)
+..++.|+-|||||.+-+++..+ .+.++.+|++|-.|..-++..+....+..
T Consensus 2 ~v~~V~G~pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~~~l~~~l~~~~~~~ 58 (348)
T pfam09848 2 AVFLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLVLVLYEALAGDLKVR 58 (348)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCHH
T ss_conf 799997779938999999999998644026820899578669999999986041200
No 160
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=96.81 E-value=0.014 Score=37.86 Aligned_cols=66 Identities=24% Similarity=0.285 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHC-CCCE--EEEEEECCCCHHHHHHHHHHHC-----CCCEE-EEECC-----HHHHHHHHHHHHHHC
Q ss_conf 438999999998873-9733--7998633764699999999971-----99789-99316-----346899999999867
Q gi|254780991|r 152 DQPAAIAQLLKGIHS-REKV--QLLLGVTGSGKTFTMAKVIEAM-----QRPAI-VMAPN-----KILAAQLYSEFKNFF 217 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~-g~~~--qlL~GVTGSGKTevya~lI~~~-----gr~aL-vLvPe-----i~La~QL~~rfk~~F 217 (805)
||=+.+......+-. |..+ .+|+|=||+|||-|--.+.+++ .+-.- |-+.. ..=--|++.++-.-|
T Consensus 24 eqI~~l~~~L~~~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~~~~~L~~~l 103 (383)
T TIGR02928 24 EQIEELAKALRPILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQVLVELANQL 103 (383)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 89999999988750674898725887888987889999999999998622699715899977854684699999999985
No 161
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=96.81 E-value=0.0028 Score=43.15 Aligned_cols=97 Identities=25% Similarity=0.333 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCC---------C
Q ss_conf 7899999999863-59668732576457899999999731898699984587535787771179996288---------5
Q gi|254780991|r 592 KRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD---------K 661 (805)
Q Consensus 592 kr~~e~l~~~~~~-~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD---------~ 661 (805)
.|+.+.|++.|.. -.|.--=+||.++..+..+.|.-=-+|.=.|+.+||++.==|-|++|-+|+ |+= +
T Consensus 231 ~Rv~~~L~e~L~~rs~v~lcPLYG~L~~~aQ~~AI~P~a~GrRKVVLATNiAEtSLTIeGvRvVi--DsGl~R~arFDP~ 308 (858)
T TIGR01970 231 RRVQEQLAERLDARSEVLLCPLYGELELAAQDRAIKPAAAGRRKVVLATNIAETSLTIEGVRVVI--DSGLARVARFDPK 308 (858)
T ss_pred HHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEEHHHHHHHEEECCEEEEE--ECCCCCCCCCCCC
T ss_conf 99999999975178710005767888978999870877466734342000122210017635887--1565567634788
Q ss_pred CCCCCCH------HHHHHHHHHHCCCCCCEEE-EEE
Q ss_conf 6744460------1377665431279986699-982
Q gi|254780991|r 662 EGFLRSK------TSLIQTIGRAARNVNSKVI-LYA 690 (805)
Q Consensus 662 ~~f~~~~------~~~~q~~GRagR~~~G~~i-l~a 690 (805)
.||-|=+ -|-.||+|||||=..|.+| ||.
T Consensus 309 sG~TRL~~~RisqASA~QRAGRAGRlepGvc~RLw~ 344 (858)
T TIGR01970 309 SGITRLETQRISQASATQRAGRAGRLEPGVCYRLWS 344 (858)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCC
T ss_conf 874024457889733765126332211141112278
No 162
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.80 E-value=0.00072 Score=47.50 Aligned_cols=77 Identities=16% Similarity=0.026 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11001244447777533211201451011333114465556202330265442132101234475445432456541333
Q gi|254780991|r 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496 (805)
Q Consensus 417 ~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~ 496 (805)
.....|.+.+...++..++...+.++++|++++.|+.|
T Consensus 373 ~ls~~l~~~i~~~L~~g~qvll~lnRrGya~~~~C~~C------------------------------------------ 410 (699)
T PRK05580 373 GLSPPLLEAIREALERGEQVLLFLNRRGYAPFLLCRDC------------------------------------------ 410 (699)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHC------------------------------------------
T ss_conf 54699999999999738847999547752251474531------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf 2357665544432221110100121555454446867542013
Q gi|254780991|r 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539 (805)
Q Consensus 497 l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~ 539 (805)
|+...|..|+.+|+||.......|+.|++..+.++.|..
T Consensus 411 ----g~~~~C~~C~~~L~~h~~~~~l~Ch~Cg~~~~~~~~Cp~ 449 (699)
T PRK05580 411 ----GWVARCPHCDGPLTLHRAGRRLRCHHCGYQEPIPRACPE 449 (699)
T ss_pred ----CCEEECCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCC
T ss_conf ----994565678986342068983322646883657554656
No 163
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.80 E-value=0.023 Score=36.19 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=59.7
Q ss_pred HHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC--CEEEEEEECCCCHHH
Q ss_conf 999987396032057402666788874215887754775188888843899999999887397--337998633764699
Q gi|254780991|r 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTF 183 (805)
Q Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTe 183 (805)
+.++.....++|+|.++..|.--|. .-.+.. +|-++|.......-.|. ...+++|.||+|||.
T Consensus 6 ~~~~~~~~~~if~~~~~L~~~yvP~---~l~~Re------------~Ei~~l~~~l~~~l~g~~~~n~~I~G~pGTGKT~ 70 (394)
T PRK00411 6 FEDLLMWDETIFKNEEVLEPDYVPE---NLPHRE------------EQIEELAFALRPALRGSRPSNVLILGPPGTGKTT 70 (394)
T ss_pred HHHHHCCCCCEECCHHHCCCCCCCC---CCCCHH------------HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHH
T ss_conf 9998647886156763379988899---898859------------9999999999999759999847998899998999
Q ss_pred HHHHHHHHCCCC------EEEEECCHHHHHHHHHHHHHHC
Q ss_conf 999999971997------8999316346899999999867
Q gi|254780991|r 184 TMAKVIEAMQRP------AIVMAPNKILAAQLYSEFKNFF 217 (805)
Q Consensus 184 vya~lI~~~gr~------aLvLvPei~La~QL~~rfk~~F 217 (805)
+.-.+.+++... +-|=.-+..-..|++.++-.-+
T Consensus 71 ~vk~v~~~l~~~~~~~~~vyINc~~~~t~~~i~~~i~~~L 110 (394)
T PRK00411 71 TVKKVFEELEEAALKVVYVYINCQIDRTRYAILSEIARSL 110 (394)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999999999746896599996966898999999999995
No 164
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=96.79 E-value=0.003 Score=42.86 Aligned_cols=84 Identities=21% Similarity=0.298 Sum_probs=55.9
Q ss_pred CCEEEEECCCCCCCHHHHHH---HHHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 75477518888884389999---9999887397337-9986337646999999999719978999316346899999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIA---QLLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~---~L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk 214 (805)
+.|....-|.|.-.|.+..+ .+++.+-+|+..+ +-||.||||||++|.-- ..+.++.|....++-
T Consensus 45 ~~f~FD~Vf~~~~tQ~~vy~~v~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~-----------~~~~Giipr~~~~lf 113 (329)
T cd01366 45 KSFSFDRVFDPDASQEDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGP-----------PENPGIIPRALEQLF 113 (329)
T ss_pred EEEECCEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCC-----------CCCCCCHHHHHHHHH
T ss_conf 077768673999998999999999999986777248996478999985472667-----------887780899999999
Q ss_pred HHC---CCC--EEEEEEECCCCCC
Q ss_conf 867---898--3899862134444
Q gi|254780991|r 215 NFF---PHN--AVEYFVSYYDYYQ 233 (805)
Q Consensus 215 ~~F---p~n--~V~~f~S~~~~yq 233 (805)
... .+. ...+.+||+-.|.
T Consensus 114 ~~i~~~~~~~~~~~v~vS~~EIYn 137 (329)
T cd01366 114 NTAEELKEKGWSYTITASMLEIYN 137 (329)
T ss_pred HHHHHHHCCCCEEEEEEEEEEEEC
T ss_conf 999851136832899999998508
No 165
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=96.78 E-value=0.004 Score=41.97 Aligned_cols=84 Identities=19% Similarity=0.291 Sum_probs=58.0
Q ss_pred CCEEEEECCCCCCCHHHHHHH----HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 754775188888843899999----999887397337-998633764699999999971997899931634689999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQ----LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~----L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
+.|....-|.|...|.+..+. |++.+-+|+..+ +-+|.||||||++|.--- -+.+|.|....++
T Consensus 54 ~~f~FD~vf~~~~tQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~~-----------~~~Giipr~~~~l 122 (338)
T cd01370 54 LKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTD-----------SDPGLMVLTMKDL 122 (338)
T ss_pred EEEECCCEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCC-----------CCCCHHHHHHHHH
T ss_conf 17764635099999899999998999999858875589994899999897857887-----------6675268999999
Q ss_pred ----HHHCCCCEEEEEEECCCCCC
Q ss_conf ----98678983899862134444
Q gi|254780991|r 214 ----KNFFPHNAVEYFVSYYDYYQ 233 (805)
Q Consensus 214 ----k~~Fp~n~V~~f~S~~~~yq 233 (805)
...-.+....+.+||+..|.
T Consensus 123 f~~i~~~~~~~~~~v~~S~~EIyn 146 (338)
T cd01370 123 FDKIEERKDDKEFEVSLSYLEIYN 146 (338)
T ss_pred HHHHHHCCCCCEEEEEEEEEEEEC
T ss_conf 999874155856999999973016
No 166
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=96.76 E-value=0.039 Score=34.50 Aligned_cols=513 Identities=14% Similarity=0.136 Sum_probs=226.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCC-CEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHH----HHHHC
Q ss_conf 8888843899999999887397-33799863376469999999997----199789993163468999999----99867
Q gi|254780991|r 147 YHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSE----FKNFF 217 (805)
Q Consensus 147 ~~P~gdQ~~Ai~~L~~~l~~g~-~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~r----fk~~F 217 (805)
|.=-..|..=-+.+...+..|. ...+.---||+|||.=|+=.+.- .+||++|=++-|-|=.||+++ ++.-|
T Consensus 259 y~~R~~Q~~la~~v~~~l~~Gt~~~~lIEA~tG~GKtlgYLLPal~~~~~~~~~vviST~Tk~LQ~QL~E~d~P~l~~~~ 338 (944)
T TIGR01407 259 YEYREEQLKLAELVEDELTHGTEEKSLIEAPTGTGKTLGYLLPALYLAKEEEKPVVISTATKVLQSQLLEKDIPLLNKIL 338 (944)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 53138899999999998415766113302376643258999999973137888569983636656565688889888651
Q ss_pred CCC-EEEEEEECCCCCCCCCC---------CCCCCCCHHHHC-----------------------------------CCC
Q ss_conf 898-38998621344442101---------555432102210-----------------------------------358
Q gi|254780991|r 218 PHN-AVEYFVSYYDYYQPEAY---------VPRTDTYIEKES-----------------------------------SIN 252 (805)
Q Consensus 218 p~n-~V~~f~S~~~~yqpEay---------~p~~d~~i~k~~-----------------------------------s~n 252 (805)
+.. .+....|+-+|-.=..+ -+..+.-+.|.. ..|
T Consensus 339 ~fk~~~~~iKg~~~YlsL~~F~~~L~~~Cet~~~~~~~~KM~~LvWLTETetGDldEl~l~~~~~~f~~~~~~dG~~~l~ 418 (944)
T TIGR01407 339 NFKLNVALIKGKKNYLSLQKFSQLLKENCETDNKEFELFKMQVLVWLTETETGDLDELNLLTGNKSFFAEVRHDGLGFLS 418 (944)
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHEEEECCCCCCHHHHCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 89712788507655436789999960478882489999987543210037987567520246750357788560564456
Q ss_pred HHHHHHHHHHHHHHHCC--CCEEEEC------CHHHHCCCCCH-HHHHCCEEEEECCCC-----------CCHHHHHHHH
Q ss_conf 89999999999998549--9849982------77896168983-477225799941981-----------1178753234
Q gi|254780991|r 253 EQIDRMRHSATRSLLER--NDCIVVS------SVSCIYGIGSV-ESYSQMIVQLKIGDS-----------VEQKELLSSL 312 (805)
Q Consensus 253 ~~i~~~R~~a~~~l~~~--~~~IVVg------srSAIfgl~~P-~~~lglIIvdEehd~-----------~~~~~~~~~l 312 (805)
..-.=---+=|+++.+. ...|.|. +++.=. ++ +.--...|+||.|.= .+..+.+.+.
T Consensus 419 ~~~~~~~~dF~~~~~~~A~~~~~~itNHA~L~~~~~~~---~~~~~~~~~liiDEAh~l~~~a~n~~~~~~~~~~~~~~i 495 (944)
T TIGR01407 419 KKDLFYEVDFYKRAQKKAEQAEILITNHAYLITRLVDK---PELLPEFRLLIIDEAHHLPDIASNLLQEELDYADLKYQI 495 (944)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHC---CCCCCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 65521128899999988833634565017887777644---777766773252226537999998611200488899999
Q ss_pred HHCCCCCCHHHHHHHHHCCCCEE---EECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCH
Q ss_conf 31176563387754533187247---831788877888731044420022210166640011100001000000002563
Q gi|254780991|r 313 VKQQYKRQDIGIIRGTFRVCGDS---IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389 (805)
Q Consensus 313 ~~~~Y~R~D~a~~RG~f~~rg~I---Ldsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~ 389 (805)
...++.-++....|=.-..+--. +++.+ .....--....+-|++-.+-..=..|.+....-+-....-..++.--.
T Consensus 496 ~~~~~~E~e~L~~r~~q~~~~~~~~~~~~~~-~~~~~L~~~~~e~deLfe~l~~~~~t~~~~s~~~~~~~~yr~~~~R~~ 574 (944)
T TIGR01407 496 DKLGKGEKEQLLKRLQQLLKQELLELLEVKE-IDKTLLKASDEELDELFELLFSYVLTQKRDSDSDLLLLKYRIDILREQ 574 (944)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8741387357999999999988898765667-877788888889999999999998763146534553344444554221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCHHHHHHCCCCCCC-CCHHHHHCCC
Q ss_conf 6788754558998998998875443321100124444777753321--120145101133311446555-6202330265
Q gi|254780991|r 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET--TGSCQSIENYSRYLTGRNPGE-PPPTLFEYIP 466 (805)
Q Consensus 390 e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e--~G~~~gienyS~~L~~r~~ge-~P~tL~dY~p 466 (805)
..+-.++..+......-+ ......+.....|..+....|..--. .+-+.++.. .-..+| .-+|+.=|..
T Consensus 575 ~~l~~~~~~~~K~~~~~~--~~L~k~l~~~~~l~~~~~~~L~~~~~~~~~~f~~~~q------~l~e~E~~~~~l~~~~D 646 (944)
T TIGR01407 575 NVLTEEIKDSGKKLHEIL--DELNKLLQIFSELEHKVLDQLEKFDLALKDDFKRVIQ------SLKEEERILYELLLELD 646 (944)
T ss_pred CHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHEEEEEEEC
T ss_conf 138999986202589999--8537899998773045888999998867889999999------88676412101345535
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHH------
Q ss_conf 44213210123447544543245654133323576655444322211101001215554544468675420132------
Q gi|254780991|r 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC------ 540 (805)
Q Consensus 467 ~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~~------ 540 (805)
++..-|+........+-...|- ...+---..+..|-+...+.+++|||=.-..--.+
T Consensus 647 ~~~~~wi~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~p~~~~~~~~SaTL~~~~~~~~~~~lLG 709 (944)
T TIGR01407 647 DNRVSWIEIELLQAKSKKLLYI-----------------KDLEVGEVLLKRLLPKKKSVILTSATLKISKSKESLPDLLG 709 (944)
T ss_pred CCCCEEEEEECCCCCCHHHEEE-----------------EHHHHCCCHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHCC
T ss_conf 8851268862154200021143-----------------20110200245542001407898667755587026887338
Q ss_pred -HHHHHHHHHCCCC------------CCCCCCEECCC---CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf -2002343201244------------67720000133---1016889999998630232124662147899999999863
Q gi|254780991|r 541 -QGIIVEQIIRPTG------------LVDPPVEIRSA---RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604 (805)
Q Consensus 541 -~~~~~eqi~rptg------------~idp~ieir~~---~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~ 604 (805)
..+.+..+..||- .-.|-|.-.+. ...|-+.+.++...... |+||.=+.+.|-.-+.+++.+
T Consensus 710 l~d~~F~t~evptp~~~a~n~~v~~p~D~p~i~~~S~~eYa~~~a~~I~e~~~~~~~--~~LVLFTS~~mL~~V~~~l~~ 787 (944)
T TIGR01407 710 LTDVKFKTIEVPTPLNYAENARVLVPTDAPAIKNVSLEEYAQEVASKIVELAALESP--KILVLFTSKEMLKAVYDLLKE 787 (944)
T ss_pred CCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHCCC--CEEEEHHHHHHHHHHHHHHHH
T ss_conf 964227898735876542111562000102230157889999999999999720689--627516489999999998530
Q ss_pred CCC--EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCC------------------CC
Q ss_conf 596--6873257645789999999973189869998458753578777117999628856------------------74
Q gi|254780991|r 605 RNI--RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE------------------GF 664 (805)
Q Consensus 605 ~~i--~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~------------------~f 664 (805)
+-. ...-+-=+++.+++.+|+++|.+|+-.||.||.=-=+|.|||.-.+++.+=+=.| -|
T Consensus 788 l~~~~~~~~LaQ~~nsGs~~ki~K~F~~ge~~ILLG~~SFWEGvDf~~~~~~~lvi~RLPF~nP~~pL~kk~~~~~~~EG 867 (944)
T TIGR01407 788 LSEEEGLEVLAQGINSGSRAKIKKRFEKGEKAILLGASSFWEGVDFPGNELVILVIPRLPFANPKEPLTKKKLQKLEEEG 867 (944)
T ss_pred CCHHCCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 20025806674126778578999986147875661155400240117997179998528677885389999998854311
Q ss_pred CCCH---------HHHHHHHHHHCCCCC--CEEEEEE
Q ss_conf 4460---------137766543127998--6699982
Q gi|254780991|r 665 LRSK---------TSLIQTIGRAARNVN--SKVILYA 690 (805)
Q Consensus 665 ~~~~---------~~~~q~~GRagR~~~--G~~il~a 690 (805)
-..+ --|=|-.||--|+.+ |-++.+=
T Consensus 868 ~npF~~~~lP~A~~RlrQalGRliR~e~drg~~~~LD 904 (944)
T TIGR01407 868 KNPFYDYALPMAILRLRQALGRLIRRENDRGSILVLD 904 (944)
T ss_pred CCCCHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 4641110130799998775100025523554689971
No 167
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=96.74 E-value=0.0018 Score=44.61 Aligned_cols=87 Identities=21% Similarity=0.291 Sum_probs=58.3
Q ss_pred CCEEEEECCCCCCCHHHHHHH----HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 754775188888843899999----999887397337-998633764699999999971997899931634689999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQ----LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~----L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
+.|....-|.|...|.+-.+. |++.+-+|+..+ +-+|.||||||++|.--.. -+ .+.+|.|....++
T Consensus 43 ~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~~~---~~-----~~~Giipr~~~~l 114 (325)
T cd01369 43 KTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPG---DP-----ELKGIIPRIVHDI 114 (325)
T ss_pred CEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEECCCCC---CC-----CCCCHHHHHHHHH
T ss_conf 245568571999998999999889999999677864699745789998625127889---84-----5578379999999
Q ss_pred HHHC---CC-CEEEEEEECCCCCC
Q ss_conf 9867---89-83899862134444
Q gi|254780991|r 214 KNFF---PH-NAVEYFVSYYDYYQ 233 (805)
Q Consensus 214 k~~F---p~-n~V~~f~S~~~~yq 233 (805)
-... .. ....+++||+-.|.
T Consensus 115 f~~i~~~~~~~~~~v~~S~~EIYn 138 (325)
T cd01369 115 FEHISSMDENLEFHVKVSYLEIYM 138 (325)
T ss_pred HHHHHHCCCCCEEEEEEEHHHHHC
T ss_conf 999971776745999999344231
No 168
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.74 E-value=0.012 Score=38.34 Aligned_cols=73 Identities=26% Similarity=0.339 Sum_probs=56.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC--CCEEEEECCHHHHH-HHHHHHHHHCCC
Q ss_conf 88888438999999998873973379986337646999999999719--97899931634689-999999986789
Q gi|254780991|r 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ--RPAIVMAPNKILAA-QLYSEFKNFFPH 219 (805)
Q Consensus 147 ~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~g--r~aLvLvPei~La~-QL~~rfk~~Fp~ 219 (805)
|-++.+..+|+..|.-++..+....+|.|-.|||||.+.-.++++.. +...+++++-.+++ .++.-+-.-||.
T Consensus 22 ~y~s~~h~~al~~L~~~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~lg~ 97 (269)
T TIGR03015 22 FYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGL 97 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 1478669999999999996489659997299898899999999845934548999769999999999999998598
No 169
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.70 E-value=0.011 Score=38.57 Aligned_cols=94 Identities=29% Similarity=0.429 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEE-EEECCHHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 884389999999988739733799863376469999999997199789-9931634689999999986789838998621
Q gi|254780991|r 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI-VMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 (805)
Q Consensus 150 ~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aL-vLvPei~La~QL~~rfk~~Fp~n~V~~f~S~ 228 (805)
-|-.+...+.+...+.....-.|+.|=||||||-++-.++.+.+.+.- |++= ++-|||-.+.
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti-----------------EDPVE~~~~g 302 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITI-----------------EDPVEYQLPG 302 (500)
T ss_pred HCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE-----------------ECCEEEECCC
T ss_conf 38998899999999728970899968999988999999999862788508984-----------------0780451598
Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC-CCCEEEECC
Q ss_conf 3444421015554321022103588999999999999854-998499827
Q gi|254780991|r 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSS 277 (805)
Q Consensus 229 ~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~-~~~~IVVgs 277 (805)
.. | ..+|+.+.--=-.+.+++++ ..|+|+||-
T Consensus 303 I~--Q---------------~qVN~k~gltfa~~LRa~LRqDPDvImVGE 335 (500)
T COG2804 303 IN--Q---------------VQVNPKIGLTFARALRAILRQDPDVIMVGE 335 (500)
T ss_pred CC--E---------------EECCCCCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf 51--5---------------631403599789999998665998599835
No 170
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=96.62 E-value=0.0044 Score=41.59 Aligned_cols=84 Identities=19% Similarity=0.297 Sum_probs=56.9
Q ss_pred CCEEEEECCCCCCCHHHHHHH----HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 754775188888843899999----999887397337-998633764699999999971997899931634689999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQ----LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~----L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
..|....-|.|...|.+-.+. |++.+-+|+..+ +-||.||||||++|.. .. .+.++.|+...++
T Consensus 51 ~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G------~~-----~~~Giipr~~~~l 119 (322)
T cd01367 51 HTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLG------DE-----NQEGLYALAARDI 119 (322)
T ss_pred CEEECCEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECC------CC-----CCCCCHHHHHHHH
T ss_conf 456577564999998999999989999998689874899942688887268426------87-----6787154699999
Q ss_pred HHHCCC--CEEEEEEECCCCCC
Q ss_conf 986789--83899862134444
Q gi|254780991|r 214 KNFFPH--NAVEYFVSYYDYYQ 233 (805)
Q Consensus 214 k~~Fp~--n~V~~f~S~~~~yq 233 (805)
-..... ....+.+||+-.|+
T Consensus 120 f~~~~~~~~~~~v~~S~~EIYn 141 (322)
T cd01367 120 FRLLAQPNDDLGVTVSFFEIYG 141 (322)
T ss_pred HHHHHCCCCCEEEEEEEEEEEC
T ss_conf 9987425565699999878618
No 171
>KOG0925 consensus
Probab=96.61 E-value=0.07 Score=32.61 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHH----HCCCCEEEE
Q ss_conf 389999999988739733799863376469999999997----199789993163468999999998----678983899
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKN----FFPHNAVEY 224 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~----~Fp~n~V~~ 224 (805)
|..-.-++.. + .+..+|.|-||||||--.-+-..+ ..+.+..--|-..-|-|+..|... -.|+ .|.|
T Consensus 51 ~k~~F~~~l~---~-nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~-EVGy 125 (699)
T KOG0925 51 QKEEFLKLLL---N-NQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGE-EVGY 125 (699)
T ss_pred HHHHHHHHHH---C-CCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCCCH-HCCC
T ss_conf 7999999986---4-826999934888864547499999987633661324715788999999888874431020-1153
Q ss_pred EEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHH-HHHCCEEEEECCCCC
Q ss_conf 8621344442101555432102210358899999999999985499849982778961689834-772257999419811
Q gi|254780991|r 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE-SYSQMIVQLKIGDSV 303 (805)
Q Consensus 225 f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~-~~lglIIvdEehd~~ 303 (805)
-+ .+.+.+.+.-+ .|+ .|-.++-++ |.- .|+ ..-|.||.||.||.+
T Consensus 126 sI------------------rfEdC~~~~T~--Lky-~tDgmLlrE---------ams---~p~l~~y~viiLDeahERt 172 (699)
T KOG0925 126 SI------------------RFEDCTSPNTL--LKY-CTDGMLLRE---------AMS---DPLLGRYGVIILDEAHERT 172 (699)
T ss_pred CC------------------CCCCCCCHHHH--HHH-HCCHHHHHH---------HHC---CCCCCCCCEEEECHHHHHH
T ss_conf 21------------------21236871589--999-533289998---------750---8554530079953166666
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf 1787532343117656338775453318724783178887788
Q gi|254780991|r 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 (805)
Q Consensus 304 ~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~ 346 (805)
--.+. -+|--. +++..| ..-.+|+-|+|...+.+
T Consensus 173 lATDi-----LmGllk-~v~~~r---pdLk~vvmSatl~a~Kf 206 (699)
T KOG0925 173 LATDI-----LMGLLK-EVVRNR---PDLKLVVMSATLDAEKF 206 (699)
T ss_pred HHHHH-----HHHHHH-HHHHHC---CCCEEEEEECCCCHHHH
T ss_conf 78999-----999999-998619---88169994060125999
No 172
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.52 E-value=0.044 Score=34.13 Aligned_cols=65 Identities=17% Similarity=0.331 Sum_probs=51.3
Q ss_pred CCHHHHHHH---HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 843899999---99988739733799863376469999999997---19978999316346899999999867898
Q gi|254780991|r 151 GDQPAAIAQ---LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 (805)
Q Consensus 151 gdQ~~Ai~~---L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp~n 220 (805)
.+|..|++. .++++..|+...+++|=.|+|||+.-+.+..+ .|++|++.+ ++.|..++++-|.++
T Consensus 76 ~~q~~al~~a~~y~enf~~~~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t-----~~dLl~~lr~t~~~~ 146 (242)
T PRK07952 76 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-----VADIMSAMKDTFRNS 146 (242)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-----HHHHHHHHHHHHHCC
T ss_conf 77899999999999865438871799789999789999999999998799499977-----999999999998068
No 173
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=96.51 E-value=0.0077 Score=39.80 Aligned_cols=86 Identities=20% Similarity=0.330 Sum_probs=59.2
Q ss_pred CCEEEEECCCCCCCHHHHHHHH----HHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 7547751888888438999999----99887397337-998633764699999999971997899931634689999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQL----LKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~L----~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
+-|....=|.|..+|.+..+.+ ++.+-+|+..+ +-||.||||||++|..- -.+.+|.|....++
T Consensus 45 ~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~-----------~~~~Giipr~~~~l 113 (328)
T cd00106 45 KSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGS-----------PKDPGIIPRALEDL 113 (328)
T ss_pred CEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCC-----------CCCCCHHHHHHHHH
T ss_conf 1776586779899989999998899999996888669999689999854074578-----------87665578999999
Q ss_pred HHHCC-----CCEEEEEEECCCCCCCC
Q ss_conf 98678-----98389986213444421
Q gi|254780991|r 214 KNFFP-----HNAVEYFVSYYDYYQPE 235 (805)
Q Consensus 214 k~~Fp-----~n~V~~f~S~~~~yqpE 235 (805)
-.... +..+.+.+|++-.|.-.
T Consensus 114 f~~~~~~~~~~~~~~v~~S~~EIyne~ 140 (328)
T cd00106 114 FNLIDERKEKNKSFSVSVSYLEIYNEK 140 (328)
T ss_pred HHHHHHHHCCCCEEEEEEEEEEEECCE
T ss_conf 999974123595289999999963898
No 174
>pfam00225 Kinesin Kinesin motor domain.
Probab=96.50 E-value=0.014 Score=37.95 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=57.3
Q ss_pred CCEEEEECCCCCCCHHHHHHH----HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 754775188888843899999----999887397337-998633764699999999971997899931634689999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQ----LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~----L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
+.|....=|.|--+|.+..+. |++.+-+|+... +-+|.||||||++|.-- ..+-+|.|.+...+
T Consensus 40 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~-----------~~~~Giipr~~~~L 108 (321)
T pfam00225 40 KTFTFDRVFDPEATQEFVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGS-----------EGEPGIIPRALEDL 108 (321)
T ss_pred EEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCC-----------CCCCCHHHHHHHHH
T ss_conf 0876685779899989999999899999996887379999799999841652689-----------98761899999999
Q ss_pred H----HHCCCCEEEEEEECCCCCC
Q ss_conf 9----8678983899862134444
Q gi|254780991|r 214 K----NFFPHNAVEYFVSYYDYYQ 233 (805)
Q Consensus 214 k----~~Fp~n~V~~f~S~~~~yq 233 (805)
- ..-.+....+++|++-.|.
T Consensus 109 f~~~~~~~~~~~~~v~~S~~EIyn 132 (321)
T pfam00225 109 FERIEERKDKYEFSVRVSYLEIYN 132 (321)
T ss_pred HHHHHHCCCCCEEEEEEEEEEEEC
T ss_conf 999983556743999999977867
No 175
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.48 E-value=0.024 Score=36.13 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHC-CCCCEEEEHHHHHCCCCCCCC--CEEEEECCCC-----------------C----CC-----CC
Q ss_conf 457899999999731-898699984587535787771--1799962885-----------------6----74-----44
Q gi|254780991|r 616 VKTLERIEIIRDLRL-GKFDVLVGINLLREGLDIPEC--GLVAILDADK-----------------E----GF-----LR 666 (805)
Q Consensus 616 ~~~~~r~~il~~~~~-g~~diLvgt~~~akGlD~p~v--~lV~i~dAD~-----------------~----~f-----~~ 666 (805)
.+..+..++|++|+. ++--||+|+.=+++|+|||+= ..|+|.-..- . +| +.
T Consensus 31 ~~~~~~~~~l~~f~~~~~~avL~~vg~~sEGIDf~~d~~r~vii~glPfp~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~ 110 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPD 110 (141)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99224999999999836880999703433442059845569999447889999899999999999856998424665899
Q ss_pred CHHHHHHHHHHHCCCCC--CEEEEE
Q ss_conf 60137766543127998--669998
Q gi|254780991|r 667 SKTSLIQTIGRAARNVN--SKVILY 689 (805)
Q Consensus 667 ~~~~~~q~~GRagR~~~--G~~il~ 689 (805)
.-+.+.|-+||.=|+.+ |.+|+.
T Consensus 111 A~r~v~Qa~GR~IR~~~D~G~iil~ 135 (141)
T smart00492 111 AMRTLAQCVGRLIRGANDYGVVVIA 135 (141)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 9999999868754578876999998
No 176
>KOG0384 consensus
Probab=96.47 E-value=0.085 Score=31.98 Aligned_cols=444 Identities=16% Similarity=0.168 Sum_probs=228.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH---HHHHHHH---CC
Q ss_conf 74026667888742158877547751888888438999999998873973379986337646999---9999997---19
Q gi|254780991|r 120 GKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFT---MAKVIEA---MQ 193 (805)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTev---ya~lI~~---~g 193 (805)
+..|.|.|| +..+......|.- . .+--.=|-+-++=|+-.--++ ..+.|--=-|=|||.- +++-+-. ..
T Consensus 346 ~~~~~~~rp--~f~Kle~qP~y~~-g-~~LRDYQLeGlNWLl~~W~k~-~n~ILADEMGLGKTvQtI~FLs~l~~~~~~~ 420 (1373)
T KOG0384 346 GCKYRPQRP--RFRKLEKQPEYKG-G-NELRDYQLEGLNWLLYSWYKR-NNCILADEMGLGKTVQTITFLSYLFHSLQIH 420 (1373)
T ss_pred CCCCCCCCH--HHHHHHCCCCCCC-C-CCHHHHHHCCHHHHHHHHHCC-CCEEEECCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 543367874--5767640943126-7-614465631328999988646-8647540025774013459999999845447
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCC--CC
Q ss_conf 9789993163468999999998678983899862134444210155543210221035889999999999998549--98
Q gi|254780991|r 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER--ND 271 (805)
Q Consensus 194 r~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~--~~ 271 (805)
-|.||+||=-|+|+ -..+|..+-.=|.|.|+-+-. ++++.-+-+...+ -.++ +-
T Consensus 421 GPfLvVvPLSTi~~-W~ref~~WtdmN~ivY~G~~~----------SR~~I~qYE~~~~-------------~~~~~~KF 476 (1373)
T KOG0384 421 GPFLVVVPLSTITA-WEREFETWTDMNVIVYHGNLE----------SRQLIRQYEFYHS-------------SNTKKLKF 476 (1373)
T ss_pred CCEEEEEECCCCHH-HHHHHHHHHHCCEEEEECCHH----------HHHHHHHHHEEEC-------------CCCCEEEE
T ss_conf 88699986400078-999999875146588826656----------7899987650454-------------77751788
Q ss_pred EEEECCHHHHCCCCCHHHHHC-----CEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf 499827789616898347722-----579994198111787532343117656338775453318724783178887788
Q gi|254780991|r 272 CIVVSSVSCIYGIGSVESYSQ-----MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 (805)
Q Consensus 272 ~IVVgsrSAIfgl~~P~~~lg-----lIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~ 346 (805)
-+++.|---|. .-...|+ ..++||.|-- +... ..-|. .--+|...--+|=..||-..+.
T Consensus 477 n~LlTTyE~vL---kDk~~L~~i~W~~~~vDEAHRL------KN~~-s~Ly~------~L~~f~~~hrlLiTGTPLQNsi 540 (1373)
T KOG0384 477 NALLTTYEIVL---KDKAELSKIPWRYLLVDEAHRL------KNDE-SKLYE------SLNQFKMNHRLLITGTPLQNSL 540 (1373)
T ss_pred EEEEHHHHHHH---CCHHHHCCCCEEEEEECHHHHH------CCCH-HHHHH------HHHHHHHCCEEEEECCCCCCCH
T ss_conf 76400189897---2688864575278974166550------6504-48999------9998643075775478540319
Q ss_pred HHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87310444200222101666400111000010000000025636788754558998998998875443321100124444
Q gi|254780991|r 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426 (805)
Q Consensus 347 ~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~ 426 (805)
-+ +-++-. .+.|..... .+...... ..+-...+..+....+ -++++|.
T Consensus 541 ---~E-----L~sLL~---------------Fl~P~kF~~--~~ef~~e~---~~~~e~~v~~Lq~~L~----P~~LRRl 588 (1373)
T KOG0384 541 ---KE-----LWSLLH---------------FLMPGKFDS--WDEFLEEF---DEETEEQVRKLQQILK----PFLLRRL 588 (1373)
T ss_pred ---HH-----HHHHHH---------------HHCCCCCCC--HHHHHHHH---CCHHHHHHHHHHHHHH----HHHHHHH
T ss_conf ---99-----999987---------------737555786--78998873---3023889999999876----8999998
Q ss_pred HHHHHHH----H-----------HCCCCC--CCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 7777533----2-----------112014--5101133311446555620233026544213210123447544543245
Q gi|254780991|r 427 TYDLEML----E-----------TTGSCQ--SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489 (805)
Q Consensus 427 ~~dle~l----~-----------e~G~~~--gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~ 489 (805)
..|+|.- . |.-|.. --.||+. |+-..-|..|.+ +. .. -
T Consensus 589 KkDVEKSLp~K~E~IlrVels~lQk~yYk~ILtkN~~~-LtkG~~g~~~~l-lN-----im---m--------------- 643 (1373)
T KOG0384 589 KKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSA-LTKGAKGSTPSL-LN-----IM---M--------------- 643 (1373)
T ss_pred HHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCHH-HH-----HH---H---------------
T ss_conf 88775227863122565405678999999999853999-836678898029-99-----99---9---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHH
Q ss_conf 65413332357665544432221110100121555454446867542013220023432012446772000013310168
Q gi|254780991|r 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569 (805)
Q Consensus 490 d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvd 569 (805)
.|. -+||+|.-|..-++..-.-.-. +........+|+..|.+= -+|
T Consensus 644 -------------ELk-KccNHpyLi~gaee~~~~~~~~----------~~~d~~l~~lI~sSGKlV----------LLD 689 (1373)
T KOG0384 644 -------------ELK-KCCNHPYLIKGAEEKILGDFRD----------KMRDEALQALIQSSGKLV----------LLD 689 (1373)
T ss_pred -------------HHH-HHCCCCCCCCCHHHHHHHHHHH----------CCHHHHHHHHHHHCCCEE----------EHH
T ss_conf -------------999-8647800048588888876530----------146799999997168588----------698
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEEHHHHHCCC
Q ss_conf 899999986302321246621478999999998635966873257645789999999973189---86999845875357
Q gi|254780991|r 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK---FDVLVGINLLREGL 646 (805)
Q Consensus 570 dl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~---~diLvgt~~~akGl 646 (805)
.|+. +....|.|||+|.---||-+-|++||.-+|+.---+||.+...-|...|..|..-. +-.|..|--=.=|+
T Consensus 690 KLL~---rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AiDhFnap~SddFvFLLSTRAGGLGI 766 (1373)
T KOG0384 690 KLLP---RLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGI 766 (1373)
T ss_pred HHHH---HHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
T ss_conf 7789---9861894599719999999999999997388611146876168899888743699988649998315676640
Q ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCC-HHHHHHHHHHHHHH
Q ss_conf 8777117999628856744460137766543127-99866999824898-89999999878888
Q gi|254780991|r 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTIT-KSIQLAIDETTRRR 708 (805)
Q Consensus 647 D~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t-~~~~~ai~e~~rrr 708 (805)
.+---.-|+|+|-|= +++.=.|..-||-| |..-.|-.| ..|| +++++-|-|-.++.
T Consensus 767 NLatADTVIIFDSDW-----NPQNDLQAqARaHRIGQkk~VnVY-RLVTk~TvEeEilERAk~K 824 (1373)
T KOG0384 767 NLATADTVIIFDSDW-----NPQNDLQAQARAHRIGQKKHVNVY-RLVTKNTVEEEILERAKLK 824 (1373)
T ss_pred CCCCCCEEEEECCCC-----CCCHHHHHHHHHHHHCCCCEEEEE-EEECCCCHHHHHHHHHHHH
T ss_conf 224466699968999-----950578999988660664547899-9745784489999999887
No 177
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.42 E-value=0.062 Score=33.03 Aligned_cols=86 Identities=26% Similarity=0.198 Sum_probs=46.2
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 33799863376469999999997199789993163468999999998678983899862134444210155543210221
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~~i~k~ 248 (805)
+...|.|=||+|||=+.|.+.++ |.-+.+...|.+. ..|||
T Consensus 211 ~vvalVGPTGVGKTTTiAKLAA~---------------------~~l~~~~~kV~lI--------------T~Dty---- 251 (412)
T PRK05703 211 GVVALVGPTGVGKTTTLAKLAAR---------------------YALEEGKDKVALI--------------TLDTY---- 251 (412)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH---------------------HHHHCCCCEEEEE--------------EECCC----
T ss_conf 36999888887567699999999---------------------9997299817999--------------83767----
Q ss_pred CCCCHHHHHHHHHHHHHHHC-----CCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCC
Q ss_conf 03588999999999999854-----99849982778961689834772257999419811
Q gi|254780991|r 249 SSINEQIDRMRHSATRSLLE-----RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303 (805)
Q Consensus 249 ~s~n~~i~~~R~~a~~~l~~-----~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~ 303 (805)
|..|+..|.. |=++-||-+.+.+-.+..=+.+..+|++|-.|-+.
T Consensus 252 ----------RigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~~dlILIDTaG~s~ 301 (412)
T PRK05703 252 ----------RIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLANCDLILIDTAGRSQ 301 (412)
T ss_pred ----------CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf ----------77799999999997197379847999999999871589979996898897
No 178
>TIGR00963 secA preprotein translocase, SecA subunit; InterPro: IPR000185 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . SecA is a cytoplasmic protein of 800 to 960 amino acid residues. Homologs of secA are also encoded in the chloroplast genome of some algae as well as in the nuclear genome of plants . It could be involved in the intraorganellar protein transport into thylakoids.; GO: 0005524 ATP binding, 0006605 protein targeting, 0006886 intracellular protein transport.
Probab=96.41 E-value=0.0077 Score=39.79 Aligned_cols=98 Identities=26% Similarity=0.303 Sum_probs=73.9
Q ss_pred CCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH--HHHHHHCCCC
Q ss_conf 72000013310168899999986302321246621478999999998635966873257645789999--9999731898
Q gi|254780991|r 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE--IIRDLRLGKF 633 (805)
Q Consensus 556 dp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~--il~~~~~g~~ 633 (805)
.|.+.-.....+-+=+..||.+.-.+|.=+||||.+-...|-|+..|.+.||+=.-|-.--..-+|+. |=+.=++|.
T Consensus 409 ~~DlvY~te~~Kw~Av~~e~~~~h~~GqPvLvGT~svE~SE~LS~lL~~~~I~H~VLNAKPENh~rEAeIia~AG~kGA- 487 (904)
T TIGR00963 409 LPDLVYKTEEEKWKAVVDEIKEIHAKGQPVLVGTTSVEKSELLSKLLKERGIPHNVLNAKPENHEREAEIIAQAGRKGA- 487 (904)
T ss_pred CCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-
T ss_conf 7773464768899999999999874689877752217778999999985789812247874467789999996088864-
Q ss_pred CEEEEHHHHHCCCCCCCCCEEEEEC
Q ss_conf 6999845875357877711799962
Q gi|254780991|r 634 DVLVGINLLREGLDIPECGLVAILD 658 (805)
Q Consensus 634 diLvgt~~~akGlD~p~v~lV~i~d 658 (805)
|=|+|||+.||=|| -|=||.|
T Consensus 488 -VTIATNMAGRGTDI---~LGGN~~ 508 (904)
T TIGR00963 488 -VTIATNMAGRGTDI---KLGGNPD 508 (904)
T ss_pred -EEEEECCCCCCCCE---EECCCHH
T ss_conf -16762478776450---3178788
No 179
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=96.39 E-value=0.0087 Score=39.42 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=56.1
Q ss_pred CCEEEEECCCCCCCHHHHHHH----HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 754775188888843899999----999887397337-998633764699999999971997899931634689999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQ----LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~----L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
+.|....-|.|...|.+..+. +++.+-+|+..+ +-+|-||||||++|.--- .+.+|.|..+.++
T Consensus 47 ~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~~-----------~~~Giipr~~~~l 115 (319)
T cd01376 47 KKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDP-----------NEPGLIPRTLSDL 115 (319)
T ss_pred EEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCC-----------CCCCHHHHHHHHH
T ss_conf 46664867189999899998865999999868985599996789998746853787-----------6564258999999
Q ss_pred HHHCC--CCEEEEEEECCCCCC
Q ss_conf 98678--983899862134444
Q gi|254780991|r 214 KNFFP--HNAVEYFVSYYDYYQ 233 (805)
Q Consensus 214 k~~Fp--~n~V~~f~S~~~~yq 233 (805)
-..-. +....+.+||+..|.
T Consensus 116 f~~~~~~~~~~~v~vS~~EIYn 137 (319)
T cd01376 116 LRMGRKQAWTGAFSMSYYEIYN 137 (319)
T ss_pred HHHHHCCCCCEEEEEEEEEEEC
T ss_conf 9976433772589999999887
No 180
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.35 E-value=0.017 Score=37.23 Aligned_cols=23 Identities=48% Similarity=0.570 Sum_probs=17.0
Q ss_pred CEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 33799863376469999999997
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~ 191 (805)
+...|.|=||+|||=+.|.+.++
T Consensus 195 ~vi~lvGPTGVGKTTTiAKLAa~ 217 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 27999778887578899999999
No 181
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=96.35 E-value=0.0066 Score=40.31 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=57.9
Q ss_pred CCEEEEECCCCCCCHHHHHHHHH----HHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 75477518888884389999999----9887397337-998633764699999999971997899931634689999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQLL----KGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~L~----~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
+.|....-|.|...|.+-.+.++ +.+-+|+..+ +-+|.||||||++|..- ..+-+|.|.+..++
T Consensus 46 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~ti~aYGqTGSGKTyTm~G~-----------~~~~Giipr~~~~l 114 (335)
T smart00129 46 KKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGT-----------PDSPGIIPRALKDL 114 (335)
T ss_pred EEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEECCC-----------CCCCCHHHHHHHHH
T ss_conf 0656786879899989999998899999997897579999799999976475689-----------88763679999999
Q ss_pred H----HHCCCCEEEEEEECCCCCCC
Q ss_conf 9----86789838998621344442
Q gi|254780991|r 214 K----NFFPHNAVEYFVSYYDYYQP 234 (805)
Q Consensus 214 k----~~Fp~n~V~~f~S~~~~yqp 234 (805)
- ..=++....+.+||+-.|+-
T Consensus 115 f~~~~~~~~~~~~~v~vS~~EIyne 139 (335)
T smart00129 115 FEKIDKLEEGWQFQVKVSYLEIYNE 139 (335)
T ss_pred HHHHHHCCCCCEEEEEEEEEEEECC
T ss_conf 9999713789549999998510166
No 182
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=96.34 E-value=0.008 Score=39.69 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=55.5
Q ss_pred CCEEEEECCCCCCCHHHHHHH----HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 754775188888843899999----999887397337-998633764699999999971997899931634689999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQ----LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~----L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
+.|....-|.|...|.+..+. |++.+-+|+..+ +-+|.||||||++|..-- -+.++.|.....+
T Consensus 40 ~~f~Fd~vf~~~~tQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~~-----------~~~Giipr~~~~l 108 (321)
T cd01374 40 QSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDE-----------QEPGIIPLAVRDI 108 (321)
T ss_pred CEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCCC-----------CCCCHHHHHHHHH
T ss_conf 45664857498999899999988999999858973479962688999835747998-----------8764688999999
Q ss_pred HHH---CCCCEEEEEEECCCCCC
Q ss_conf 986---78983899862134444
Q gi|254780991|r 214 KNF---FPHNAVEYFVSYYDYYQ 233 (805)
Q Consensus 214 k~~---Fp~n~V~~f~S~~~~yq 233 (805)
-.. .++....+.+|++..|.
T Consensus 109 f~~i~~~~~~~~~v~~S~~EIYn 131 (321)
T cd01374 109 FQRIQDTPDREFLLRVSYLEIYN 131 (321)
T ss_pred HHHHHHCCCCCEEEEEEEHHHHC
T ss_conf 99997385876799999816629
No 183
>PRK10436 hypothetical protein; Provisional
Probab=96.34 E-value=0.037 Score=34.68 Aligned_cols=89 Identities=27% Similarity=0.386 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 3899999999887397337998633764699999999971---9978999316346899999999867898389986213
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~ 229 (805)
-+..++.+..-+.....-.|..|=||||||-++-.++++. ++..+-+ ++-|||...+.
T Consensus 200 ~~~~~~~~~~~~~~p~GliLvtGPTGSGKTTTLya~L~~l~~~~~~I~Ti-------------------EDPVE~~l~gi 260 (461)
T PRK10436 200 TPAQLAQFRQALQQPQGLVLVTGPTGSGKTVTLYSALQTLNTAQINICSV-------------------EDPVEIPLAGI 260 (461)
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE-------------------ECCCCCCCCCC
T ss_conf 99999999999838997799978999956999999997434677169996-------------------07743554675
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC-CCCEEEECC
Q ss_conf 444421015554321022103588999999999999854-998499827
Q gi|254780991|r 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSS 277 (805)
Q Consensus 230 ~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~-~~~~IVVgs 277 (805)
. | ..+|+....---++.+++++ ..|+|+||-
T Consensus 261 ~--Q---------------~~vn~~~g~tfa~~lrs~LRqDPDVImvGE 292 (461)
T PRK10436 261 N--Q---------------TQIHPRAGLTFQRVLRALLRQDPDVIMVGE 292 (461)
T ss_pred C--C---------------CEECCCCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf 4--5---------------231322131399999998746999998657
No 184
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=96.25 E-value=0.014 Score=37.93 Aligned_cols=72 Identities=28% Similarity=0.354 Sum_probs=47.1
Q ss_pred CCHHHHHHH----HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC---CC--
Q ss_conf 843899999----999887397337-99863376469999999997199789993163468999999998678---98--
Q gi|254780991|r 151 GDQPAAIAQ----LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP---HN-- 220 (805)
Q Consensus 151 gdQ~~Ai~~----L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp---~n-- 220 (805)
..|.+..+. |++.+-+|+..+ +-||.||||||++|.- - -.+-+|.|....++=.... +.
T Consensus 67 atQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G------~-----~~~~Giipr~~~~lF~~i~~~~~~~~ 135 (356)
T cd01365 67 ASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMG------Y-----KEEKGIIPRLCEELFQRIESKKEQNL 135 (356)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECC------C-----CCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 889999999989999999789857999878899983768626------9-----87650999999999999973436781
Q ss_pred EEEEEEECCCCCC
Q ss_conf 3899862134444
Q gi|254780991|r 221 AVEYFVSYYDYYQ 233 (805)
Q Consensus 221 ~V~~f~S~~~~yq 233 (805)
...+.+||+-.|.
T Consensus 136 ~~~v~~S~~EIYn 148 (356)
T cd01365 136 SYEVEVSYMEIYN 148 (356)
T ss_pred EEEEEEEEEEEEC
T ss_conf 5999999999967
No 185
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=96.11 E-value=0.0045 Score=41.55 Aligned_cols=129 Identities=15% Similarity=0.150 Sum_probs=72.3
Q ss_pred EEEEEEECCCCHH-HHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf 3799863376469-9999999971---99789993163468999999998678983899862134444210155543210
Q gi|254780991|r 170 VQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245 (805)
Q Consensus 170 ~qlL~GVTGSGKT-evya~lI~~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~~i 245 (805)
-.+|.=--||||| -+.-+++++. +..+|||+|--..+..+++-++. -.|-|.-+.+.
T Consensus 4 ~t~ld~HPGaGKTr~vLP~~v~~~i~~~lRtlVLaPTRVV~~Em~eAL~g----~~vr~~t~a~~--------------- 64 (146)
T pfam07652 4 LTVLDLHPGAGKTRKVLPELVRECIDRRLRTLVLAPTRVVLAEMEEALRG----LPIRYHTPAVS--------------- 64 (146)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCC----CCCEEECHHHH---------------
T ss_conf 27985389999702248999999997286189977279999999999758----99467523431---------------
Q ss_pred HHHCCCCHHHHHHHHHHHHH-HHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHH
Q ss_conf 22103588999999999999-85499849982778961689834772257999419811178753234311765633877
Q gi|254780991|r 246 EKESSINEQIDRMRHSATRS-LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 (805)
Q Consensus 246 ~k~~s~n~~i~~~R~~a~~~-l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a~ 324 (805)
. +..-++.+|.+.|++... +++ +.+..|-.+||.||.|=.= ....... -...
T Consensus 65 ~-~~~~~~ivdvmCHAT~t~r~l~----------------~~~~~ny~viIMDE~H~~D-----P~SIAar-----G~~~ 117 (146)
T pfam07652 65 S-EHTGREIVDVMCHATFTQRLLS----------------PVRVPNYEVIIMDEAHFTD-----PASIAAR-----GYIS 117 (146)
T ss_pred C-CCCCCCEEEEECHHHHHHHHHC----------------CCCCCCEEEEEEECCCCCC-----HHHHHHH-----HHHH
T ss_conf 3-6688841889715988889736----------------8885644799985122389-----8999988-----9999
Q ss_pred HHHHHCCCCEEEECCCCCHH
Q ss_conf 54533187247831788877
Q gi|254780991|r 325 IRGTFRVCGDSIEIFPSHLE 344 (805)
Q Consensus 325 ~RG~f~~rg~ILdsatps~E 344 (805)
.+..+..+..|.=+|||-..
T Consensus 118 ~~~~~g~~a~i~mTATPPG~ 137 (146)
T pfam07652 118 TLVELGEAAAIFMTATPPGT 137 (146)
T ss_pred HHHHCCCEEEEEEECCCCCC
T ss_conf 88543865799995689998
No 186
>KOG1002 consensus
Probab=96.05 E-value=0.14 Score=30.44 Aligned_cols=137 Identities=17% Similarity=0.161 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCE---EE
Q ss_conf 33101688999999863023--21246621478999999998635966873257645789999999973189869---99
Q gi|254780991|r 563 SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV---LV 637 (805)
Q Consensus 563 ~~~~qvddl~~ei~~~~~~~--~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~di---Lv 637 (805)
.....++-|.+|+.....+. .+.+||.--.-|-+-+.=.|...|+.+.-+.|.++..+|...++.|.+. +|+ ||
T Consensus 617 qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd-~~c~vfLv 695 (791)
T KOG1002 617 QSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKND-IDCRVFLV 695 (791)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCC-CCEEEEEE
T ss_conf 00157999999999999715525420498778899999988612673389963677867789999974128-88179999
Q ss_pred EHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 8458753578777117999628856744460137766543127998669998248988999999987
Q gi|254780991|r 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704 (805)
Q Consensus 638 gt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~~~G~~il~ad~~t~~~~~ai~e~ 704 (805)
.-+--.-.|.+-+.+.|.++|.=- -|+-+..-.-+|-|-|--++=+|+-|. +.++++.-|-+.
T Consensus 696 SLkAGGVALNLteASqVFmmDPWW--NpaVe~Qa~DRiHRIGQ~rPvkvvrf~--iEnsiE~kIieL 758 (791)
T KOG1002 696 SLKAGGVALNLTEASQVFMMDPWW--NPAVEWQAQDRIHRIGQYRPVKVVRFC--IENSIEEKIIEL 758 (791)
T ss_pred EECCCCEEEEECHHCEEEEECCCC--CHHHHHHHHHHHHHHCCCCCEEEEEEE--HHCCHHHHHHHH
T ss_conf 860584686310000257626643--677775544467760475652688863--012289999999
No 187
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.04 E-value=0.088 Score=31.88 Aligned_cols=133 Identities=23% Similarity=0.218 Sum_probs=86.4
Q ss_pred CCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH----HHHCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 7200001331016889999998630232124662147899999999----863596687325764578999999997318
Q gi|254780991|r 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY----LYERNIRVRYMHSEVKTLERIEIIRDLRLG 631 (805)
Q Consensus 556 dp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~----~~~~~i~~~~~h~~~~~~~r~~il~~~~~g 631 (805)
|-.|-.-...|..+-+++-|......|.|+.+-+.---+.-||+.. |.+.+|..+|-+| + ..||
T Consensus 118 ~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S--~--------~~fr-- 185 (441)
T COG4098 118 DTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDS--D--------SYFR-- 185 (441)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC--C--------HHCC--
T ss_conf 689997427985101699999999659869984686101177789999762149866672587--1--------3133--
Q ss_pred CCCEEEEH--HHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 98699984--5875357877711799962885674446013776654312799866999824898899999998788
Q gi|254780991|r 632 KFDVLVGI--NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706 (805)
Q Consensus 632 ~~diLvgt--~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~~~G~~il~ad~~t~~~~~ai~e~~r 706 (805)
..++|+| |+++=--.| .+++|=..|. ||-+..-..|.+-+-+|..+|.-|..+...+.-.++.+..-+.
T Consensus 186 -~plvVaTtHQLlrFk~aF---D~liIDEVDA--FP~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g~~ 256 (441)
T COG4098 186 -APLVVATTHQLLRFKQAF---DLLIIDEVDA--FPFSDDQSLQYAVKKARKKEGATIYLTATPTKKLERKILKGNL 256 (441)
T ss_pred -CCEEEEEHHHHHHHHHHC---CEEEEECCCC--CCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCE
T ss_conf -447997668888888643---3899830245--6566788899999975123673699964880788887540775
No 188
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.02 E-value=0.048 Score=33.87 Aligned_cols=167 Identities=18% Similarity=0.272 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 999999998873973379986337646999999999719--978999316346899999999867898389986213444
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ--RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~g--r~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~y 232 (805)
.-+.++.+. -..=.|..|=||||||=|+|.+|-..| ++.=||+= ++-+||.|-
T Consensus 117 ~v~~~~a~~---~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTI-----------------EDPIEyvh~----- 171 (350)
T TIGR01420 117 PVLRELAER---PRGLILVTGPTGSGKSTTLASMIDYINKNKAGHIITI-----------------EDPIEYVHK----- 171 (350)
T ss_pred HHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEE-----------------ECCEEEEEC-----
T ss_conf 899999836---6993898768898678999999978740388882563-----------------177314104-----
Q ss_pred CCCCCCCCCCCCHHHHCCCCHH-----HHHHHHHHH-HHHHCCCCEEEECC-------HHHHCCCCCHHHHHCCEEEEEC
Q ss_conf 4210155543210221035889-----999999999-99854998499827-------7896168983477225799941
Q gi|254780991|r 233 QPEAYVPRTDTYIEKESSINEQ-----IDRMRHSAT-RSLLERNDCIVVSS-------VSCIYGIGSVESYSQMIVQLKI 299 (805)
Q Consensus 233 qpEay~p~~d~~i~k~~s~n~~-----i~~~R~~a~-~~l~~~~~~IVVgs-------rSAIfgl~~P~~~lglIIvdEe 299 (805)
.|.|-||+. +..+- .|+ .+|++..|+|+||= .-||- +-+ .|.
T Consensus 172 -------------~~~sli~QREvG~DT~sF~-~ALraALReDPDvILiGE~RD~ET~~~AL~---AAE--TGH------ 226 (350)
T TIGR01420 172 -------------NKRSLINQREVGLDTLSFA-NALRAALREDPDVILIGEMRDLETVELALT---AAE--TGH------ 226 (350)
T ss_pred -------------CCEEEEECCCCCCCHHHHH-HHHHHHHCCCCCEEEEECCCCHHHHHHHHH---HHH--HCC------
T ss_conf -------------7702454362467545799-997684102898899825562789999998---742--131------
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCC
Q ss_conf 98111787532343117656338775453318724783178887788873104442002221016664001110000100
Q gi|254780991|r 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 (805)
Q Consensus 300 hd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i 379 (805)
||--=-|-|+.+ .-..=|+|+||+.-- -.+|..+-...+ ...+|+-+.+.+..--
T Consensus 227 ------------LV~gTLHTnsA~------~ti~RIid~FP~~~~-~qiR~~La~~L~------Av~sQrL~p~~~G~GR 281 (350)
T TIGR01420 227 ------------LVFGTLHTNSAA------KTIERIIDVFPAEEQ-EQIRTQLAESLV------AVISQRLLPKKNGGGR 281 (350)
T ss_pred ------------HHHHHHHHHHHH------HHHHHHHCCCCHHHH-HHHHHHHHHHHH------HHHCCCCEEECCCCCE
T ss_conf ------------567666642388------876777425977566-899999987678------7700054223389625
Q ss_pred HHHHHCCCCHHHHHHHH
Q ss_conf 00000025636788754
Q gi|254780991|r 380 YANSHYVTPRPTLNTAM 396 (805)
Q Consensus 380 ~Pa~~~v~~~e~l~~a~ 396 (805)
-++.++...-|.+..-+
T Consensus 282 v~~~Eil~~Tpav~~lI 298 (350)
T TIGR01420 282 VLAVEILINTPAVRNLI 298 (350)
T ss_pred EEEEEEECCCHHHHHHH
T ss_conf 88887521587899960
No 189
>KOG0242 consensus
Probab=96.02 E-value=0.015 Score=37.57 Aligned_cols=85 Identities=24% Similarity=0.387 Sum_probs=55.3
Q ss_pred CCEEEEECCCCCCCHHHHHHH----HHHHHHCCCCE-EEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHH-HHHHHH
Q ss_conf 754775188888843899999----99988739733-799863376469999999997199789993163468-999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQ----LLKGIHSREKV-QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA-AQLYSE 212 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~----L~~~l~~g~~~-qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La-~QL~~r 212 (805)
..|..-.-|-|.-.|.+..+. |+.++-.|+.. ..=||.||||||++|.-.-.+ |-++ .|| ..|++.
T Consensus 53 ~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~---PGii-----~la~~dif~~ 124 (675)
T KOG0242 53 EKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDD---PGII-----PLAMKDIFEK 124 (675)
T ss_pred CCEEEEEECCCCCCHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCEEEECCCCC---CCEE-----EHHHHHHHHH
T ss_conf 4125200448998878898740078899974686652564237889875477515788---9733-----4589999999
Q ss_pred HHHHCCCCEEEEEEECCCCC
Q ss_conf 99867898389986213444
Q gi|254780991|r 213 FKNFFPHNAVEYFVSYYDYY 232 (805)
Q Consensus 213 fk~~Fp~n~V~~f~S~~~~y 232 (805)
... .++....+-+||+-.|
T Consensus 125 I~~-~~~r~f~v~vSYlEIY 143 (675)
T KOG0242 125 IDK-SGEREFSVRVSYLEIY 143 (675)
T ss_pred HHH-CCCCEEEEEEEEEEEE
T ss_conf 873-6774068887888885
No 190
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.99 E-value=0.061 Score=33.09 Aligned_cols=63 Identities=22% Similarity=0.297 Sum_probs=46.3
Q ss_pred HHHHHHHHHH---HHHCCC--CEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 3899999999---887397--33799863376469999999997---19978999316346899999999867898
Q gi|254780991|r 153 QPAAIAQLLK---GIHSRE--KVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 (805)
Q Consensus 153 Q~~Ai~~L~~---~l~~g~--~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp~n 220 (805)
-..|+.++.+ ....|. +-..|+|--|+|||++++.+.-+ .|.+++++. .|.+..++|+-|.++
T Consensus 137 R~~a~~~a~~F~~~y~~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~-----~p~~~~~lK~s~~d~ 207 (306)
T PRK08939 137 RLDALMAALDFLEAYKPGEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVH-----FPEFIRELKNAISDG 207 (306)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-----HHHHHHHHHHHHCCC
T ss_conf 99999999999997376988877889899999899999999999998699299987-----599999999986489
No 191
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.99 E-value=0.028 Score=35.64 Aligned_cols=65 Identities=22% Similarity=0.404 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH---------CCCCEEEEECCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 4389999999988739733799863376469999999997---------1997899931634689999999986789838
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA---------MQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~---------~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V 222 (805)
+|.++|. .+++ ...+..|+.|||||-+-++=.+= .++|+|||.||..+..-+-.=+-+ +|.+-|
T Consensus 216 EQneIIR-----~ek~-~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPe-LGe~~V 288 (747)
T COG3973 216 EQNEIIR-----FEKN-KILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPE-LGEEGV 288 (747)
T ss_pred HHHHHHH-----CCCC-CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHCHH-HCCCCE
T ss_conf 6777875-----5578-74899558888713588999999985356624668659982838999999875544-166863
Q ss_pred E
Q ss_conf 9
Q gi|254780991|r 223 E 223 (805)
Q Consensus 223 ~ 223 (805)
.
T Consensus 289 ~ 289 (747)
T COG3973 289 V 289 (747)
T ss_pred E
T ss_conf 6
No 192
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.98 E-value=0.04 Score=34.43 Aligned_cols=39 Identities=28% Similarity=0.442 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 438999999998873973379986337646999999999719
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~g 193 (805)
+|-+.|+++.. ....-.++-|-||||||=++..++.+..
T Consensus 67 ~~~~~l~~~~~---~~~GlilitGptGSGKtTtl~a~l~~~~ 105 (264)
T cd01129 67 ENLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHHHHHHHHH---CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99999999970---8998899978999977999999998643
No 193
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.02 Score=36.72 Aligned_cols=61 Identities=38% Similarity=0.629 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEH----HHHHCCCCCCCCCEEEEE
Q ss_conf 789999999986359668732576457899999999731898699984----587535787771179996
Q gi|254780991|r 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI----NLLREGLDIPECGLVAIL 657 (805)
Q Consensus 592 kr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt----~~~akGlD~p~v~lV~i~ 657 (805)
+..+++|++||.+.|+++...|+.. .+.+++|..|++|+|||+ ..+.+|||.|...--+|+
T Consensus 348 ~e~aeel~e~Lr~~Gi~a~~~~a~~-----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF 412 (1187)
T COG1110 348 REKAEELAEYLRSHGINAELIHAEK-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVF 412 (1187)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC-----HHHHHHHCCCCEEEEEEECCCCCCEEECCCCHHHEEEEEE
T ss_conf 8999999999986696079862320-----2245665067601799850213430224774345457899
No 194
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family; InterPro: IPR004473 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements , , as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities , . The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognize asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the R subunit (HsdR) of type I restriction endonucleases such as EcoRI (3.1.21.3 from EC), which recognises the DNA sequence 5'-GAATTC; the R protein (HsdR) is required for both nuclease and ATPase activity , , , .; GO: 0003677 DNA binding, 0005524 ATP binding, 0009035 Type I site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system.
Probab=95.96 E-value=0.058 Score=33.21 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHCCCHH--HHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC---C--CC-E
Q ss_conf 558999999998739603--20574026667888742158877547751888888438999999998873---9--73-3
Q gi|254780991|r 99 MTPSVQALARLIQSDNPL--LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS---R--EK-V 170 (805)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~---g--~~-~ 170 (805)
......++.||.++-+.| .++..++ +. ....+ ++...-|.=-|-.|++++++.+.. + .+ -
T Consensus 258 ~~~~~~~~~GllkkE~lLd~i~~f~~f---~~---~~~~g------~~~k~~~~y~qy~av~ki~~~~~~~~~~k~~~n~ 325 (813)
T TIGR00348 258 LKEFDILLNGLLKKERLLDFIRNFIIF---DK---EESVG------LVTKVIARYMQYRAVKKIVESILRKEKGKDKRNK 325 (813)
T ss_pred CHHHHHHHHCCCCCHHHHHHHCCEEEE---EC---CCCCC------HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 367898740667703687633121366---14---51100------1101003889999999999999853137886367
Q ss_pred EEEEEECCCCHHHHHHHHHHHC-------CCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 7998633764699999999971-------9978999316346899999999867
Q gi|254780991|r 171 QLLLGVTGSGKTFTMAKVIEAM-------QRPAIVMAPNKILAAQLYSEFKNFF 217 (805)
Q Consensus 171 qlL~GVTGSGKTevya~lI~~~-------gr~aLvLvPei~La~QL~~rfk~~F 217 (805)
=+.|=-||||||.+|+-+...+ .=.++|+|-=.-|=.||+.+|.++.
T Consensus 326 G~iWHtQGSGKtlTm~f~A~k~~~~~~~~~p~v~fvvDR~eLd~Ql~~~~~~~~ 379 (813)
T TIGR00348 326 GLIWHTQGSGKTLTMLFLARKLRKQKELKNPKVFFVVDRRELDEQLYKEFSSLK 379 (813)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHH
T ss_conf 448985076378899999999987465269849999727277889999998764
No 195
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=95.80 E-value=0.014 Score=37.97 Aligned_cols=86 Identities=21% Similarity=0.293 Sum_probs=55.4
Q ss_pred CEEEEECCCCCCCHHHHHHHH----HHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 547751888888438999999----99887397337-9986337646999999999719978999316346899999999
Q gi|254780991|r 140 FFQMQTDYHPSGDQPAAIAQL----LKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 (805)
Q Consensus 140 ~f~l~~~~~P~gdQ~~Ai~~L----~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk 214 (805)
-|....=|.|+ .|.+..+.+ ++.+-+|+..+ +-||.||||||++|..--.. ..+.++.|+....+-
T Consensus 49 ~F~Fd~Vf~~~-tQ~evy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~~~~--------~~~~Giipr~~~~lF 119 (334)
T cd01375 49 SFKFDGVFHNA-SQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTES--------YKDRGLIPRALEQVF 119 (334)
T ss_pred EEECCEECCCC-CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCCC--------CCCCCHHHHHHHHHH
T ss_conf 77778677999-989999999899999985887257997135689975881378876--------244662678999999
Q ss_pred HHC---CCCEEEEEEECCCCCCC
Q ss_conf 867---89838998621344442
Q gi|254780991|r 215 NFF---PHNAVEYFVSYYDYYQP 234 (805)
Q Consensus 215 ~~F---p~n~V~~f~S~~~~yqp 234 (805)
... ++....+.+||+-.|.-
T Consensus 120 ~~i~~~~~~~~~v~~S~~EIYnE 142 (334)
T cd01375 120 REVAMRATKTYTVHVSYLEIYNE 142 (334)
T ss_pred HHHHHCCCCEEEEEEEEEEEECC
T ss_conf 99862868539999999997578
No 196
>PRK08116 hypothetical protein; Validated
Probab=95.79 E-value=0.051 Score=33.65 Aligned_cols=68 Identities=19% Similarity=0.294 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHH---HHHHHHC-CC--CEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 8888843899999---9998873-97--33799863376469999999997---19978999316346899999999867
Q gi|254780991|r 147 YHPSGDQPAAIAQ---LLKGIHS-RE--KVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFF 217 (805)
Q Consensus 147 ~~P~gdQ~~Ai~~---L~~~l~~-g~--~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~F 217 (805)
|.+...+++|++. -++.+.. +. ..-+|+|=+|+|||.+...+..+ .|.+|++. -++.|..++++-|
T Consensus 81 ~~~~~~~~~a~~~a~~Y~~~f~~~~~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~-----~~~~ll~~lk~~~ 155 (262)
T PRK08116 81 WLFRKGSEKAYKVAVKYVKKFEEMKKESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFV-----NVPELLNRIKSTY 155 (262)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE-----EHHHHHHHHHHHH
T ss_conf 56895259999999999998987364686189989899989999999999999879939998-----8999999999998
Q ss_pred CC
Q ss_conf 89
Q gi|254780991|r 218 PH 219 (805)
Q Consensus 218 p~ 219 (805)
.+
T Consensus 156 ~~ 157 (262)
T PRK08116 156 NS 157 (262)
T ss_pred HC
T ss_conf 63
No 197
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.78 E-value=0.17 Score=29.71 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999988739733799863376469999999997----1997899931634689999999986789
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
..++.+..|+..| .-.+|-|=+|.|||-..++++.. .|+||++..-|.+ ..|+..|+-+...+
T Consensus 182 ~~LD~~~~Gl~~g-~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLEMs-~eql~~R~la~~s~ 248 (421)
T TIGR03600 182 PKLDRLTNGLVKG-DLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS-AEQLGERLLASKSG 248 (421)
T ss_pred HHHHHHHCCCCCC-CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHHHHHHCC
T ss_conf 7899983699988-6899985467874599999999999866983899925799-99999999998548
No 198
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=95.78 E-value=0.039 Score=34.56 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----C---CCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 4389999999988739733799863376469999999997----1---9978999316346899999999867898
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----M---QRPAIVMAPNKILAAQLYSEFKNFFPHN 220 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~---gr~aLvLvPei~La~QL~~rfk~~Fp~n 220 (805)
+|.+||.. ...+.++.+.-|||||.|+.+-|.. . ....|+|+-...-|..|-+|+...++..
T Consensus 4 ~Q~~av~~-------~~~~llV~AgAGSGKT~~L~~Ri~~li~~~~~~p~~IL~lTFT~kAA~Em~~Ri~~~l~~~ 72 (494)
T pfam00580 4 EQRKAVTH-------LGGPLLVLAGAGTGKTRVLTERIAYLILEGGIDPEEILAVTFTNKAAREMKERILKLLGKA 72 (494)
T ss_pred HHHHHHCC-------CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECHHHHHHHHHHHHHHHCCCC
T ss_conf 89999809-------9999799971870689999999999998189997478767028999999999999873834
No 199
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=95.77 E-value=0.18 Score=29.59 Aligned_cols=112 Identities=19% Similarity=0.346 Sum_probs=75.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH----HCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEH-----HHHHCC-CCCCCC
Q ss_conf 3212466214789999999986----359668732576457899999999731898699984-----587535-787771
Q gi|254780991|r 582 GLRILLTVLTKRMAEDLTEYLY----ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI-----NLLREG-LDIPEC 651 (805)
Q Consensus 582 ~~R~l~~~~tkr~~e~l~~~~~----~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt-----~~~akG-lD~p~v 651 (805)
+-++++.+-|+..+....+.+. ..++++..+.|+.+.....+.+ +. .+|||||| +|+.+| +++.+|
T Consensus 69 ~~~alil~PTrELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlI~TPgrl~~~l~~~~~~l~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---KR-GPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH---HC-CCEEEEECCHHHHHHHHCCCCCCCCC
T ss_conf 966999968799999999999985057983899983898879999998---53-87599968189999998488651322
Q ss_pred CEEEEECCCC---CCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 1799962885---67444601377665431279986699982489889999999
Q gi|254780991|r 652 GLVAILDADK---EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702 (805)
Q Consensus 652 ~lV~i~dAD~---~~f~~~~~~~~q~~GRagR~~~G~~il~ad~~t~~~~~ai~ 702 (805)
.++++=.||. .||...-+...... +.+-+.++|.-..+..+.+..+
T Consensus 145 ~~lVlDEAD~ll~~gf~~~i~~I~~~l-----~~~~Q~~lfSAT~~~~v~~l~~ 193 (203)
T cd00268 145 KYLVLDEADRMLDMGFEDQIREILKLL-----PKDRQTLLFSATMPKEVRDLAR 193 (203)
T ss_pred CEEEEECHHHHHHCCCHHHHHHHHHHC-----CCCCEEEEEEECCCHHHHHHHH
T ss_conf 489998588887477699999999858-----9677799998049988999999
No 200
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.73 E-value=0.039 Score=34.53 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=48.6
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 999999988739733799863376469999999997----1997899931634689999999986789
Q gi|254780991|r 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 156 Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
.++++..|+..| .-.++-|-||+|||.+.++++.. .|++++++..|.+ ..++..|+-+....
T Consensus 8 ~lD~~~gGl~~G-~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~-~~~~~~R~~a~~~~ 73 (186)
T pfam03796 8 DLDQLTGGLQKG-DLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEMS-AEQLAERLLSSESR 73 (186)
T ss_pred HHHHHHCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHHHHHC
T ss_conf 788642698888-1799996799987999999999999970996687547552-99999999998626
No 201
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.69 E-value=0.042 Score=34.26 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=34.7
Q ss_pred HHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHHHCCC---------CEEEEECCHHHHHHHHH
Q ss_conf 9999999-88739733799863376469999999997199---------78999316346899999
Q gi|254780991|r 156 AIAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR---------PAIVMAPNKILAAQLYS 211 (805)
Q Consensus 156 Ai~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr---------~aLvLvPei~La~QL~~ 211 (805)
+|+.+.. |+..| +-.-++|-.|||||.+-++++..+.+ .++++--|-++.++-..
T Consensus 7 ~lD~~LgGGip~G-~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~ 71 (226)
T cd01393 7 ALDELLGGGIPTG-RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred HHHHHHCCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHH
T ss_conf 8998857998888-3999999999989999999999985422116999619999557753199999
No 202
>KOG1803 consensus
Probab=95.67 E-value=0.021 Score=36.47 Aligned_cols=58 Identities=22% Similarity=0.488 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHH
Q ss_conf 3899999999887397337998633764699999999971---9978999316346899999999
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFK 214 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rfk 214 (805)
|.+|+..... .. ....+||--|+|||+|...+|.++ ++++||++|-=.--.-+.+|+-
T Consensus 190 Qk~Av~~~~~---~k-~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803 190 QKAAVSFAIN---NK-DLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred HHHHHHHHHC---CC-CCEEEECCCCCCCEEEHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHC
T ss_conf 9999999735---68-8357557998884043999999999728859997673678999998750
No 203
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.67 E-value=0.027 Score=35.75 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC-------CCCEEEEECCHHHHHHHHHHHHHHCCCC----
Q ss_conf 43899999999887397337998633764699999999971-------9978999316346899999999867898----
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM-------QRPAIVMAPNKILAAQLYSEFKNFFPHN---- 220 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~-------gr~aLvLvPei~La~QL~~rfk~~Fp~n---- 220 (805)
.|.+|+. ....+.++...-|||||.|+.+-|+.+ ....|+|+=.-.-|..|-+|+...+|..
T Consensus 6 ~Q~~AV~-------~~~gp~lVlAGaGSGKT~tLt~Ria~Li~~~~v~P~~ILalTFT~kAA~Emk~Rl~~~lg~~~~~~ 78 (672)
T PRK10919 6 GQQQAVE-------FVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARG 78 (672)
T ss_pred HHHHHHC-------CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999983-------999998999738558799999999999866898933385442179999999999997718321378
Q ss_pred -EEEEEEEC
Q ss_conf -38998621
Q gi|254780991|r 221 -AVEYFVSY 228 (805)
Q Consensus 221 -~V~~f~S~ 228 (805)
.|.-|||.
T Consensus 79 ~~i~TFHS~ 87 (672)
T PRK10919 79 LMISTFHTL 87 (672)
T ss_pred CEEECHHHH
T ss_conf 678848999
No 204
>KOG0243 consensus
Probab=95.66 E-value=0.0071 Score=40.04 Aligned_cols=94 Identities=20% Similarity=0.341 Sum_probs=63.8
Q ss_pred CCEEEEECCCCCCCHH----HHHHHHHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 7547751888888438----99999999887397337-998633764699999999971997899931634689999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQP----AAIAQLLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~----~Ai~~L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
+.|..---|-|..+|. +|+..++..+-.|+.+. .-||-||+|||+||-.=....+ ..+-|+.++.|--+..+
T Consensus 95 k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~---g~l~~~aGIIPRal~~I 171 (1041)
T KOG0243 95 KTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKN---GELPSEAGIIPRALRQI 171 (1041)
T ss_pred CEEECCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCCC---CCCCCCCCCCHHHHHHH
T ss_conf 000011222752658999999988999998624772599864788885246236754345---88996578342999999
Q ss_pred HHHCCCCEEEEE--EECCCCCCCC
Q ss_conf 986789838998--6213444421
Q gi|254780991|r 214 KNFFPHNAVEYF--VSYYDYYQPE 235 (805)
Q Consensus 214 k~~Fp~n~V~~f--~S~~~~yqpE 235 (805)
=.-+-..-.+|+ |||+-+|--|
T Consensus 172 Fd~Le~~~~EYsvKVSfLELYNEE 195 (1041)
T KOG0243 172 FDTLEAQGAEYSVKVSFLELYNEE 195 (1041)
T ss_pred HHHHHHCCCEEEEEEEEHHHHHHH
T ss_conf 999984488179998742654178
No 205
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.65 E-value=0.16 Score=29.86 Aligned_cols=51 Identities=22% Similarity=0.394 Sum_probs=37.3
Q ss_pred HHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHH-CC
Q ss_conf 88739733799863376469999999997---1997899931634689999999986-78
Q gi|254780991|r 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNF-FP 218 (805)
Q Consensus 163 ~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~-Fp 218 (805)
.+.....--+++|-||+|||+.-..+..+ .|.+|++++ +++|.+.+++. |.
T Consensus 178 ~F~~~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~t-----a~~L~~~l~~~~~~ 232 (330)
T PRK06835 178 NFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRT-----SDELIENLREIRFN 232 (330)
T ss_pred HCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-----HHHHHHHHHHHHCC
T ss_conf 24788886698899999889999999999998799499962-----99999999997545
No 206
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=95.64 E-value=0.2 Score=29.25 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=43.8
Q ss_pred HHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 9999999-8873973379986337646999999999----71997899931634689999999986
Q gi|254780991|r 156 AIAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKILAAQLYSEFKNF 216 (805)
Q Consensus 156 Ai~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~----~~gr~aLvLvPei~La~QL~~rfk~~ 216 (805)
.++++.. |+..| ...|+.|-+|||||-.-++.+. +.|.++|+++-|-+ ..|+..+++++
T Consensus 7 ~LD~~l~GGi~~g-s~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~-~~~l~~~~~~~ 70 (231)
T pfam06745 7 GLDEILKGGIPEG-RVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEP-PEDLRENAKSF 70 (231)
T ss_pred HHHHHCCCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHHHC
T ss_conf 6886316998299-6999985897259999999999999865896899981379-99999999982
No 207
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=95.61 E-value=0.0097 Score=39.06 Aligned_cols=87 Identities=23% Similarity=0.350 Sum_probs=55.4
Q ss_pred CCEEEEECCCCCCCHHHHHHH----HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 754775188888843899999----999887397337-998633764699999999971997899931634689999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQ----LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~----L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
+-|....-|.|.-+|.+..+. |+..+-+|+..+ +-+|.||||||++|.-.-. - ..+.+|.|....++
T Consensus 48 ~~f~FD~vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~~~---~-----~~~~Glipr~~~~l 119 (333)
T cd01371 48 KVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVRE---P-----PELRGIIPNSFAHI 119 (333)
T ss_pred CEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCC---C-----HHHCCHHHHHHHHH
T ss_conf 266646686999998999999989999998488744899743689987177468899---8-----47567348999999
Q ss_pred HHHC---CCCEEEEEEECCCCCC
Q ss_conf 9867---8983899862134444
Q gi|254780991|r 214 KNFF---PHNAVEYFVSYYDYYQ 233 (805)
Q Consensus 214 k~~F---p~n~V~~f~S~~~~yq 233 (805)
=... ++....+.+||+-.|.
T Consensus 120 F~~~~~~~~~~~~v~~S~~EIYn 142 (333)
T cd01371 120 FGHIAKAENVQFLVRVSYLEIYN 142 (333)
T ss_pred HHHHHCCCCCCEEEEEEEEECCC
T ss_conf 99874167860899999860116
No 208
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.59 E-value=0.09 Score=31.79 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=36.3
Q ss_pred HHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHH
Q ss_conf 9999999-88739733799863376469999999997---199789993163468999
Q gi|254780991|r 156 AIAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQL 209 (805)
Q Consensus 156 Ai~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL 209 (805)
.++.+.. |+..| ...++.|--|+|||-+.+++..+ .|..++++.-|-+...++
T Consensus 7 ~lD~vLgGGi~~G-~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE~~~~er~ 63 (218)
T cd01394 7 GLDELLGGGVERG-TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERF 63 (218)
T ss_pred HHHHHHCCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf 8999856998788-79999899998499999999999863698699996655676999
No 209
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=95.57 E-value=0.14 Score=30.25 Aligned_cols=45 Identities=29% Similarity=0.373 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 884389999999988739733799863376469999999997199
Q gi|254780991|r 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 (805)
Q Consensus 150 ~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr 194 (805)
.|...+.+..+....-.+..-.+.-|=||||||-++-.+.....+
T Consensus 121 ~g~~~~~~~~~L~~~v~~~~~ilIsG~TGSGKTT~l~all~~i~~ 165 (283)
T pfam00437 121 TGAFDADIAEFLRQAVQARGNILVSGGTGSGKTTLLYALLNEINT 165 (283)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 977859999999999981975999889999889999999984087
No 210
>PRK09354 recA recombinase A; Provisional
Probab=95.56 E-value=0.07 Score=32.61 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=65.0
Q ss_pred HHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 9887397337998633764699999999971---9978999316346899999999867898389986213444421015
Q gi|254780991|r 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238 (805)
Q Consensus 162 ~~l~~g~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~ 238 (805)
-|+..| +..-++|-.+||||.+-+++|+++ |..+.++=.|-++.++.+..+ |-|.=.+++ +||+.
T Consensus 55 GG~P~G-RivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald~~~a~~l----GVd~d~llv-----~qpd~-- 122 (350)
T PRK09354 55 GGLPKG-RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKL----GVDIDNLLV-----SQPDT-- 122 (350)
T ss_pred CCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHC----CCCHHHEEE-----ECCCH--
T ss_conf 996787-089998898777999999999999975994799960002798899984----977157178-----56867--
Q ss_pred CCCCCCHHHHCCCCHHHHHHHHHHHHHHH-CC-CCEEEECCHHHHC
Q ss_conf 55432102210358899999999999985-49-9849982778961
Q gi|254780991|r 239 PRTDTYIEKESSINEQIDRMRHSATRSLL-ER-NDCIVVSSVSCIY 282 (805)
Q Consensus 239 p~~d~~i~k~~s~n~~i~~~R~~a~~~l~-~~-~~~IVVgsrSAIf 282 (805)
--+-++....|. ++ -+.|||-|++|+-
T Consensus 123 -----------------~Eqal~i~e~Lvrsg~vd~IVvDSVaAL~ 151 (350)
T PRK09354 123 -----------------GEQALEIADALVRSGAVDLIVVDSVAALV 151 (350)
T ss_pred -----------------HHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf -----------------99999999999854884189982533457
No 211
>KOG0247 consensus
Probab=95.47 E-value=0.012 Score=38.35 Aligned_cols=54 Identities=31% Similarity=0.446 Sum_probs=40.2
Q ss_pred CCEEEEECCCCCCCHHHHHHHH----HHHHHCCCCEEEE--EEECCCCHHHHHHHHHHHCC
Q ss_conf 7547751888888438999999----9988739733799--86337646999999999719
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQL----LKGIHSREKVQLL--LGVTGSGKTFTMAKVIEAMQ 193 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~L----~~~l~~g~~~qlL--~GVTGSGKTevya~lI~~~g 193 (805)
..|-...=|.|+--|..-.+.. +..+..|.. .|| +||||||||.+|..-..+.|
T Consensus 81 ~~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgqn-~LlFTyGVTgSGKTYTm~G~~~~~G 140 (809)
T KOG0247 81 KKFSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQN-SLLFTYGVTGSGKTYTMTGTPDRPG 140 (809)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC-EEEEEEECCCCCCEEEEECCCCCCC
T ss_conf 67632453598732799999876788999871643-2699850147874377506988777
No 212
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=95.47 E-value=0.0095 Score=39.13 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=56.2
Q ss_pred CEEEEECCCCCCCHHHHHHHH----HHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 547751888888438999999----99887397337-9986337646999999999719978999316346899999999
Q gi|254780991|r 140 FFQMQTDYHPSGDQPAAIAQL----LKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 (805)
Q Consensus 140 ~f~l~~~~~P~gdQ~~Ai~~L----~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk 214 (805)
.|....-|.|.-+|.+-.+.+ ++.+-+|+..+ +-||.||||||++|.--...... ..-.+.++.|..++.+-
T Consensus 42 ~f~FD~Vf~~~~tQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~---~~~~~~Giipr~~~~lf 118 (337)
T cd01373 42 MFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDE---SPHGLQGVIPRIFEYLF 118 (337)
T ss_pred EEECCEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCCCCC---CCCCCCCHHHHHHHHHH
T ss_conf 766981549999989999998698999985888448997447888861798536654445---67543781799999999
Q ss_pred HHC--------CCCEEEEEEECCCCCC
Q ss_conf 867--------8983899862134444
Q gi|254780991|r 215 NFF--------PHNAVEYFVSYYDYYQ 233 (805)
Q Consensus 215 ~~F--------p~n~V~~f~S~~~~yq 233 (805)
... .+....+.+||+-.|.
T Consensus 119 ~~i~~~~~~~~~~~~~~v~~S~~EIYn 145 (337)
T cd01373 119 SLIQREEEKRGDGLKFLCKCSFLEIYN 145 (337)
T ss_pred HHHHHHHHHCCCCCEEEEEEEEEEEEC
T ss_conf 999888862256724999999999987
No 213
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.34 E-value=0.1 Score=31.47 Aligned_cols=84 Identities=24% Similarity=0.184 Sum_probs=47.8
Q ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHC
Q ss_conf 37998633764699999999971997899931634689999999986789838998621344442101555432102210
Q gi|254780991|r 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249 (805)
Q Consensus 170 ~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~~i~k~~ 249 (805)
...|.|=||+|||=|.|++.+ +|.-+.|...|.+- ..|||
T Consensus 178 V~alVGPTGVGKTTTiAKLAA---------------------r~~l~~g~~kVaLI--------------T~DTY----- 217 (404)
T PRK06995 178 VFALVGPTGVGKTTTTAKLAA---------------------RCVMRHGASKVALL--------------TTDSY----- 217 (404)
T ss_pred EEEEECCCCCCHHHHHHHHHH---------------------HHHHHHCCCCEEEE--------------ECCCC-----
T ss_conf 589866888763758999999---------------------99998389837999--------------76875-----
Q ss_pred CCCHHHHHHHHHHHHHHHC-----CCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCC
Q ss_conf 3588999999999999854-----9984998277896168983477225799941981
Q gi|254780991|r 250 SINEQIDRMRHSATRSLLE-----RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302 (805)
Q Consensus 250 s~n~~i~~~R~~a~~~l~~-----~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~ 302 (805)
|..|+..|.. |=++-||-+...+-..+.-+.+..+|++|-.|-+
T Consensus 218 ---------RIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~~dlILIDTaGrs 266 (404)
T PRK06995 218 ---------RIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRNKHIVLIDTVGMS 266 (404)
T ss_pred ---------CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf ---------4789999999998759559995999999999997089999998099989
No 214
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=95.34 E-value=0.083 Score=32.06 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=44.2
Q ss_pred HHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHH
Q ss_conf 9887397337998633764699999999971---997899931634689999999
Q gi|254780991|r 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 162 ~~l~~g~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rf 213 (805)
-|+..| +...++|-.+||||++.+++|+++ |..++++=.|-++.++....+
T Consensus 47 GGlP~G-Ri~ei~G~essGKTtlal~~ia~aQk~gg~~~~iD~E~a~d~~~a~~l 100 (322)
T pfam00154 47 GGLPKG-RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKL 100 (322)
T ss_pred CCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHCCHHHHHHC
T ss_conf 997787-089998898777899999999999734993899853660598899980
No 215
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.026 Score=35.85 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=25.3
Q ss_pred CEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECC
Q ss_conf 33799863376469999999997---19978999316
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPN 202 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPe 202 (805)
+..+|.||||||||=+.+.+... .|+.+++.+-.
T Consensus 207 ~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaD 243 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 0899989998978999999999999779917999706
No 216
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.28 E-value=0.12 Score=30.82 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=44.3
Q ss_pred HHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHH
Q ss_conf 9887397337998633764699999999971---997899931634689999999
Q gi|254780991|r 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 162 ~~l~~g~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rf 213 (805)
-|+..| +..-++|-.+||||.+.+++|+++ |..++++=.|-++.+.....+
T Consensus 50 GGiP~G-Rivei~G~essGKTtlal~~ia~aQk~gg~~~~iDaE~a~d~~~a~~l 103 (325)
T cd00983 50 GGYPKG-RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKL 103 (325)
T ss_pred CCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHCCCHHHHHHC
T ss_conf 996688-089998898777999999999998735983999962542598999980
No 217
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.25 E-value=0.018 Score=36.95 Aligned_cols=104 Identities=18% Similarity=0.186 Sum_probs=62.2
Q ss_pred CHHHHH-HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC--CCCC
Q ss_conf 214789-9999999863596687325764578999999997318986999845875357877711799962885--6744
Q gi|254780991|r 589 VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK--EGFL 665 (805)
Q Consensus 589 ~~tkr~-~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~--~~f~ 665 (805)
.+|.|. --+|..-|...||...-.|++.+... .|+..- .|-+.+=-=|||..+| +|.++.|+. .|+.
T Consensus 484 p~t~Rgy~~~li~SL~s~giq~hl~gvd~s~e~------~f~~dg-kvtis~IyrAKGnEap---fVy~lga~~~s~gLa 553 (660)
T COG3972 484 PGTMRGYIYELIHSLKSKGIQQHLWGVDISHET------KFKQDG-KVTISRIYRAKGNEAP---FVYALGAAYLSTGLA 553 (660)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC------CCCCCC-EEEEEEEECCCCCCCC---EEEEEHHHHCCHHHH
T ss_conf 742100699999999873454404666765566------411366-3899863315677575---899961344274567
Q ss_pred CCHHH-HHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 46013-776654312799866999824898899999998788888
Q gi|254780991|r 666 RSKTS-LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709 (805)
Q Consensus 666 ~~~~~-~~q~~GRagR~~~G~~il~ad~~t~~~~~ai~e~~rrr~ 709 (805)
..|- |--..-|+ -.--+|+. ..++|.+.+.|.++.+.
T Consensus 554 -~~RN~LFTamTRS--kawvrV~g----~gpsm~~li~efn~l~q 591 (660)
T COG3972 554 -DWRNILFTAMTRS--KAWVRVVG----LGPQMQRLITEFNILRQ 591 (660)
T ss_pred -HHHHHHHHHHHHH--HHHHEEEC----CCCHHHHHHHHHHHHHH
T ss_conf -7776899999874--35413421----48017899999989875
No 218
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.25 E-value=0.21 Score=29.01 Aligned_cols=93 Identities=19% Similarity=0.248 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 24556542267743211147558999999998739603205740266678887421588775477518888884389999
Q gi|254780991|r 79 QSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158 (805)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~ 158 (805)
.......+..+..+++.+..|...+ -+.++++= +.. +.+ +. + + .++.++
T Consensus 7 ~e~~i~~~l~ei~~aLleaDV~~~v--v~~~~~~i----k~k--~~~---------~~------~-----~---~~~vi~ 55 (270)
T PRK06731 7 KQESVPFIIQKVIRMLEQNDVEQYF--IHAYAEKL----KVK--FEN---------AT------M-----I---TEEVIE 55 (270)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHH----HHH--HCC---------CC------C-----H---HHHHHH
T ss_conf 2650999999999999976998899--99999999----988--504---------55------3-----2---999999
Q ss_pred HHHHHHHC---------C-CCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECC
Q ss_conf 99998873---------9-733799863376469999999997---19978999316
Q gi|254780991|r 159 QLLKGIHS---------R-EKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPN 202 (805)
Q Consensus 159 ~L~~~l~~---------g-~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPe 202 (805)
.|.+.+.. + -...+|-|+||||||=+.+.+... .++.+++++-.
T Consensus 56 ~l~~~l~~~~~~~~~~~~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~D 112 (270)
T PRK06731 56 YILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 112 (270)
T ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 999999875076654679981899988898988999999999998679908999838
No 219
>KOG0388 consensus
Probab=95.21 E-value=0.27 Score=28.26 Aligned_cols=119 Identities=20% Similarity=0.295 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCE-EEEHHHHHC
Q ss_conf 0168899999986302321246621478999999998635966873257645789999999973189869-998458753
Q gi|254780991|r 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV-LVGINLLRE 644 (805)
Q Consensus 566 ~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~di-Lvgt~~~ak 644 (805)
+..--|-+-..+..+.|.|+|.+.--.+|-+-+-+||.-.|+.-.-+||..+...|..++++|...++=| |+.|---.=
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred CCEEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 54363998989864178258821579899999999987604606985575404678888863357755899974046766
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEE
Q ss_conf 578777117999628856744460137766543127-998669998
Q gi|254780991|r 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILY 689 (805)
Q Consensus 645 GlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ 689 (805)
|+.+--..-|+-||.|- +.+.=.|...||-| |..-.|-.|
T Consensus 1108 GINLTAADTViFYdSDW-----NPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388 1108 GINLTAADTVIFYDSDW-----NPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred CCCCCCCCEEEEECCCC-----CCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 20111242489944889-----963216778888750675430456
No 220
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=95.16 E-value=0.28 Score=28.14 Aligned_cols=96 Identities=19% Similarity=0.189 Sum_probs=52.2
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHC-----CCCEEEEECCHH-------HHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
Q ss_conf 7337998633764699999999971-----997899931634-------6899999999867898389986213444421
Q gi|254780991|r 168 EKVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKI-------LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 (805)
Q Consensus 168 ~~~qlL~GVTGSGKTevya~lI~~~-----gr~aLvLvPei~-------La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpE 235 (805)
+.+..|||-+|||||-..-.+..+. +..+++|..+.. +......+|+..+.+-.+... |
T Consensus 34 ~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~~~l~~~~~~~f~~~l~~~d~l~i----D----- 104 (219)
T pfam00308 34 YNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFVDALRDNKIEAFKKSYRNVDLLLI----D----- 104 (219)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHH----C-----
T ss_conf 7826998899998889999999999984999828884399999988999981888899999763233652----2-----
Q ss_pred CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHH
Q ss_conf 0155543210221035889999999999998549984998277896
Q gi|254780991|r 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281 (805)
Q Consensus 236 ay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAI 281 (805)
| |+ ..+-.+.++.+=+...+++.+....||+++..+.
T Consensus 105 ------D--i~-~l~~~~~~ee~lf~l~N~~~~~~~~lllts~~~p 141 (219)
T pfam00308 105 ------D--IQ-FLAGKEKTQEEFFHTFNALHENNKQIVLTSDRPP 141 (219)
T ss_pred ------C--HH-HHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf ------3--67-6568647899999999999972986999779981
No 221
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=95.15 E-value=0.23 Score=28.81 Aligned_cols=93 Identities=27% Similarity=0.407 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 843899999999887397337998633764699999999971997-8999316346899999999867898389986213
Q gi|254780991|r 151 GDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP-AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229 (805)
Q Consensus 151 gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~-aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~ 229 (805)
|=-++-++.+..-|..-..-.|..|=||||||=|.=.+..+++.+ .=||+= ++-|||=+.+=
T Consensus 228 Gm~~~~l~~~~~li~rpHGIiLVTGPTGSGKtTTLYaaL~~LN~~~~NIlTv-----------------EDPVEY~i~GI 290 (495)
T TIGR02533 228 GMSPELLSSLERLIKRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTV-----------------EDPVEYQIEGI 290 (495)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEE-----------------ECCEEEEECCC
T ss_conf 8888899999999718896188417789852588999998635899715686-----------------57824762487
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCC-CCEEEECC
Q ss_conf 4444210155543210221035889999999999998549-98499827
Q gi|254780991|r 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSS 277 (805)
Q Consensus 230 ~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~-~~~IVVgs 277 (805)
+ | .++|+.|+--=-.++|++++- .|+|.||=
T Consensus 291 g--Q---------------~Qvn~kIglTFA~GLRaILRQDPDiiMvGE 322 (495)
T TIGR02533 291 G--Q---------------IQVNPKIGLTFAAGLRAILRQDPDIIMVGE 322 (495)
T ss_pred C--E---------------EEECCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 6--3---------------651465430388887886427998899823
No 222
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.14 E-value=0.13 Score=30.50 Aligned_cols=138 Identities=23% Similarity=0.326 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 899999999887397337998633764699999999971--997899931634689999999986789838998621344
Q gi|254780991|r 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 (805)
Q Consensus 154 ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~--gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~ 231 (805)
|..+.++.+ .-..-.|..|-|||||+-++|..|... .++.-||+=| +-+||.|.
T Consensus 114 P~i~~~~~~---~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIE-----------------DPIE~vh~---- 169 (353)
T COG2805 114 PPIVRELAE---SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIE-----------------DPIEYVHE---- 169 (353)
T ss_pred CHHHHHHHH---CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEC-----------------CCHHHHHC----
T ss_conf 779999982---879669986799996787999999998414775168723-----------------74686504----
Q ss_pred CCCCCCCCCCCCCHHHHCCCCHHHHH---H-HHHHH-HHHHCCCCEEEECCH---HHHCCCCCHH--HHHCCEEEEECCC
Q ss_conf 44210155543210221035889999---9-99999-998549984998277---8961689834--7722579994198
Q gi|254780991|r 232 YQPEAYVPRTDTYIEKESSINEQIDR---M-RHSAT-RSLLERNDCIVVSSV---SCIYGIGSVE--SYSQMIVQLKIGD 301 (805)
Q Consensus 232 yqpEay~p~~d~~i~k~~s~n~~i~~---~-R~~a~-~~l~~~~~~IVVgsr---SAIfgl~~P~--~~lglIIvdEehd 301 (805)
.|.|-||+.--+ . =..++ .+|++..|+|+||-- ..|. +-+ .-.|.-+.=-.|-
T Consensus 170 --------------skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGEmRD~ETi~---~ALtAAETGHLV~~TLHT 232 (353)
T COG2805 170 --------------SKKSLINQREVGRDTLSFANALRAALREDPDVILVGEMRDLETIR---LALTAAETGHLVFGTLHT 232 (353)
T ss_pred --------------CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH---HHHHHHHCCCEEEEECCC
T ss_conf --------------327666687745427889999999860299979982134699999---999898608877774023
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCH
Q ss_conf 11178753234311765633877545331872478317888778887310444200
Q gi|254780991|r 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357 (805)
Q Consensus 302 ~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deI 357 (805)
. +.+ .-..-++|+||+.-.+ .+|..+-...+
T Consensus 233 ~------------------sA~------~ti~RiidvFp~~ek~-~vR~~La~sL~ 263 (353)
T COG2805 233 N------------------SAA------KTIDRIIDVFPAEEKD-QVRSQLAESLR 263 (353)
T ss_pred C------------------CHH------HHHHHHHHHCCHHHHH-HHHHHHHHHHH
T ss_conf 6------------------377------7777988738863467-99999999999
No 223
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=95.13 E-value=0.036 Score=34.82 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=34.0
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 99999887397337998633764699999999971997899931634689999999986789
Q gi|254780991|r 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 158 ~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
+.+.+.++. +..+|.|-||||||++. +..++.|-|+|=| --|+.---|-||.
T Consensus 129 ~~v~~~l~~--~~~vl~G~TG~GKT~lL-~~L~~~G~~viDL-------EglA~HRGS~FG~ 180 (333)
T PRK11784 129 RFVIDTLEE--PLVVLGGMTGSGKTRLL-QALANAGAQVLDL-------EGLANHRGSSFGR 180 (333)
T ss_pred HHHHHHHCC--CCEEEECCCCCCHHHHH-HHHHHCCCCEECH-------HHHHHCCCCCCCC
T ss_conf 999998546--85998678887789999-9999759974338-------9886325642358
No 224
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.29 Score=28.03 Aligned_cols=97 Identities=25% Similarity=0.255 Sum_probs=55.3
Q ss_pred CCCCCCCHHHHH--HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEH--------------HHHHCCC
Q ss_conf 212466214789--999999986359668732576457899999999731898699984--------------5875357
Q gi|254780991|r 583 LRILLTVLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI--------------NLLREGL 646 (805)
Q Consensus 583 ~R~l~~~~tkr~--~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt--------------~~~akGl 646 (805)
.-.|++|-|-|+ .|-|..|=.-.||.+... .+..+-..+|.+|+..++ |||-| +++.-
T Consensus 380 ~valit~DtyRiga~eQL~~y~~ilgvpv~~~---~~~~~l~~~l~~l~~~~l-vliDTaG~~~rd~~~~~~~~~l~~-- 453 (557)
T PRK12727 380 DVALVTTDTQRVGGREQLHSYGRQLGIAVHEA---DSAESLLDLLERLRDYKL-VLIDTAGMGQRDRALAAQLNWLRA-- 453 (557)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCEEEEE---CCHHHHHHHHHHHCCCCE-EEEECCCCCCCCHHHHHHHHHHHC--
T ss_conf 18999726640879999999999839757982---899999999998369998-999499988469999999998751--
Q ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEEC
Q ss_conf 8777117999628856744460137766543127-99866999824
Q gi|254780991|r 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691 (805)
Q Consensus 647 D~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad 691 (805)
.++|.-.-++.|-. ..+.+..++-+=++ +..|.+++=.|
T Consensus 454 -~~~~~~~Lvl~a~~-----~~~~l~~~~~~~~~~~~~~~i~TKlD 493 (557)
T PRK12727 454 -ARQVTSLLVLPANA-----HFSDLDEVVRRFAHAKPQGVVLTKLD 493 (557)
T ss_pred -CCCCCEEEEEECCC-----CHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf -47763599996889-----98999999998537998748996143
No 225
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.10 E-value=0.053 Score=33.54 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH----HC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEE-
Q ss_conf 438999999998873973379986337646999999999----71---9978999316346899999999867898389-
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE----AM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVE- 223 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~----~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~- 223 (805)
.|..|+ -.+....|+.---|||||-|+..=|+ .- ....|.|+=..--|..|-+|+++++|.+.|.
T Consensus 200 ~Qr~Av-------i~~ed~~LVLAGAGSGKT~vLt~RiayLI~~g~~~P~~ILaLTFT~kAA~EMreRl~~~lg~~~v~~ 272 (684)
T PRK11054 200 SQARAV-------VNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRKAAEEMDERIRERLGTEDITA 272 (684)
T ss_pred HHHHHE-------EECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 999572-------7479964898338997077999999999975999866778686349999999999997549998378
Q ss_pred -EEEEC
Q ss_conf -98621
Q gi|254780991|r 224 -YFVSY 228 (805)
Q Consensus 224 -~f~S~ 228 (805)
-|||.
T Consensus 273 ~TFHSl 278 (684)
T PRK11054 273 RTFHAL 278 (684)
T ss_pred EEHHHH
T ss_conf 659999
No 226
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.03 E-value=0.041 Score=34.40 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=48.2
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 99999998873973379986337646999999999----71997899931634689999999986789
Q gi|254780991|r 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 156 Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~----~~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
.++++..|+..| .-.++-|-||+|||.+.++++. +.|.++++...|.+- .|+..|+-+....
T Consensus 19 ~LD~~~~Gl~~G-eL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~-~~~~~Rlls~~~g 84 (271)
T cd01122 19 VLNKLTKGLRKG-ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPV-VRTARRLLGQYAG 84 (271)
T ss_pred HHHHHHCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCH-HHHHHHHHHHHHC
T ss_conf 688873799998-08999968998699999999999999769908999704999-9999999999829
No 227
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.03 E-value=0.2 Score=29.23 Aligned_cols=74 Identities=27% Similarity=0.386 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHCCCC---CEEEEHH--HHHCCCCCCC--CCEEEEECCCC--C-------------------CC---
Q ss_conf 457899999999731898---6999845--8753578777--11799962885--6-------------------74---
Q gi|254780991|r 616 VKTLERIEIIRDLRLGKF---DVLVGIN--LLREGLDIPE--CGLVAILDADK--E-------------------GF--- 664 (805)
Q Consensus 616 ~~~~~r~~il~~~~~g~~---diLvgt~--~~akGlD~p~--v~lV~i~dAD~--~-------------------~f--- 664 (805)
.+..++.++|+.|....- -||.++. -+++|+|||+ +..|+|+-.-- + +|
T Consensus 28 ~~~~~~~~~l~~f~~~~~~~gaiL~~v~~Gk~sEGiDf~~~~~r~viivglP~p~~~d~~~~~r~~y~~~~~~~~~~~~~ 107 (142)
T smart00491 28 KDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEV 107 (142)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 98357999999999862369819999844157521505997765999970899999999999999999986489983311
Q ss_pred --CCCHHHHHHHHHHHCCCCC--CEEEEE
Q ss_conf --4460137766543127998--669998
Q gi|254780991|r 665 --LRSKTSLIQTIGRAARNVN--SKVILY 689 (805)
Q Consensus 665 --~~~~~~~~q~~GRagR~~~--G~~il~ 689 (805)
+..-+.+.|-+||.=|+.+ |.+|+.
T Consensus 108 y~~~a~~~v~QaiGR~IR~~~D~g~iil~ 136 (142)
T smart00491 108 YLFDAMRALAQAIGRAIRHKNDYGVVVLL 136 (142)
T ss_pred EHHHHHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 25899999999829675468853999997
No 228
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=94.99 E-value=0.25 Score=28.48 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHH-HH----HHHH-CC-----CCEEEEECCHHHHHHHHHHHHH
Q ss_conf 389999999988739733799863376469999-99----9997-19-----9789993163468999999998
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM-AK----VIEA-MQ-----RPAIVMAPNKILAAQLYSEFKN 215 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevy-a~----lI~~-~g-----r~aLvLvPei~La~QL~~rfk~ 215 (805)
|..||..+.+ | +..|+--=||||||+.- +- +.+. .+ -.+|+++|=++|..-+..+++.
T Consensus 27 Q~~a~~~i~~----G-~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~ 95 (814)
T COG1201 27 QRYAIPEIHS----G-ENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEE 95 (814)
T ss_pred HHHHHHHHHC----C-CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 9999999858----9-8469986899973799999999999860688888856999957078887899999999
No 229
>PRK12377 putative replication protein; Provisional
Probab=94.98 E-value=0.16 Score=29.87 Aligned_cols=63 Identities=17% Similarity=0.266 Sum_probs=49.5
Q ss_pred CHHHHHH---HHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 4389999---999988739733799863376469999999997---1997899931634689999999986789
Q gi|254780991|r 152 DQPAAIA---QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 152 dQ~~Ai~---~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
+|..|+. .+.+++.+|....++.|=+|.|||-.-..+--+ .|++|++.. ++.|+.+++.-+.+
T Consensus 82 ~~~~a~~~a~~~~~~F~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t-----~~dLv~~L~~a~~~ 150 (248)
T PRK12377 82 GQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT-----VPDVMSRLHESYDN 150 (248)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-----HHHHHHHHHHHHHC
T ss_conf 8999999999999987318860899899998788999999999998799699988-----99999999999984
No 230
>KOG0245 consensus
Probab=94.90 E-value=0.024 Score=36.11 Aligned_cols=95 Identities=25% Similarity=0.291 Sum_probs=63.6
Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEE-EEEECCCCHHHHHH
Q ss_conf 39603205740266678887421588775477518888884389999999988----73973379-98633764699999
Q gi|254780991|r 112 SDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI----HSREKVQL-LLGVTGSGKTFTMA 186 (805)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~~L~~~l----~~g~~~ql-L~GVTGSGKTevya 186 (805)
+..|-|.-.+.+-.|.+.+|- |- +|.+..+.|-..+ -.|+..++ -||-|||||+++|.
T Consensus 44 k~~~~FtfD~SYWS~d~edPh--------fA---------sQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMM 106 (1221)
T KOG0245 44 KDAPKFTFDYSYWSHDSEDPH--------FA---------SQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMM 106 (1221)
T ss_pred CCCCCEECCEEEECCCCCCCC--------HH---------HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEE
T ss_conf 667750111145437888975--------04---------3889998876899997752464578873367888602663
Q ss_pred HHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCC-----EEEEEEECCCCC
Q ss_conf 9999719978999316346899999999867898-----389986213444
Q gi|254780991|r 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN-----AVEYFVSYYDYY 232 (805)
Q Consensus 187 ~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n-----~V~~f~S~~~~y 232 (805)
- ++ =--|.++.||+..++=++--+| ...++|||+-.|
T Consensus 107 G------~~---~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIY 148 (1221)
T KOG0245 107 G------FQ---EPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIY 148 (1221)
T ss_pred C------CC---CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHH
T ss_conf 5------67---878897515889999999860455561389998622577
No 231
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=94.89 E-value=0.057 Score=33.30 Aligned_cols=39 Identities=28% Similarity=0.538 Sum_probs=32.2
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHH
Q ss_conf 7337998633764699999999971---99789993163468
Q gi|254780991|r 168 EKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILA 206 (805)
Q Consensus 168 ~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La 206 (805)
.++.++.|-||||||.++.++|.+. |.+++|.=|.=.++
T Consensus 42 ~~H~lv~G~tGsGKT~~i~~li~~~~~rg~~~II~DpkGe~~ 83 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFV 83 (410)
T ss_pred HCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf 274799889999889999999999998699099995885499
No 232
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.84 E-value=0.31 Score=27.76 Aligned_cols=45 Identities=27% Similarity=0.334 Sum_probs=38.0
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHHH
Q ss_conf 33799863376469999999997199---7899931634689999999
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAMQR---PAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~gr---~aLvLvPei~La~QL~~rf 213 (805)
+..+|+|-+|||||.+...++.+.++ +++++.++..........+
T Consensus 3 ~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~ 50 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL 50 (148)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH
T ss_conf 789999999702999999999872668996899875998988898765
No 233
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=94.78 E-value=0.062 Score=33.02 Aligned_cols=116 Identities=15% Similarity=0.091 Sum_probs=50.4
Q ss_pred CHHHHHCCHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHCCCHHHHCCCC-CCCCCCCCCCCCCC--CCCCEEEEE
Q ss_conf 0023201245565422677432---11147558999999998739603205740-26667888742158--877547751
Q gi|254780991|r 72 TASKGEFQSQSSISMSEKQTRE---ISEQTMTPSVQALARLIQSDNPLLKNGKI-WTPHRSWSINNHSK--DITFFQMQT 145 (805)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~f~l~~ 145 (805)
.......-..+-+.+-+..+-+ +..||+|..- +..+|..|.+---.... -.+..+..++..+. ...+-.
T Consensus 105 ~~~~~~~gD~Lvalf~E~~S~a~Y~Lk~qgi~Rl~--~~~~ish~i~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--- 179 (774)
T TIGR02639 105 GKKEIDIGDLLVALFDEEDSHASYFLKSQGITRLD--ILNYISHGISKDDKKDQLGEEAAEEEEELQEEKEDSAREE--- 179 (774)
T ss_pred CCCCCCCCHHHHEECCCCCCHHHHHHHHCCCCHHH--HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC---
T ss_conf 88602311100111027861310203321786999--9997414554578756331222342014314677787665---
Q ss_pred CCCCCCCHHHHHHHHHHHHHC----CC-----------------------CEEEEEEECCCCHHHHH---HHHHHHC
Q ss_conf 888888438999999998873----97-----------------------33799863376469999---9999971
Q gi|254780991|r 146 DYHPSGDQPAAIAQLLKGIHS----RE-----------------------KVQLLLGVTGSGKTFTM---AKVIEAM 192 (805)
Q Consensus 146 ~~~P~gdQ~~Ai~~L~~~l~~----g~-----------------------~~qlL~GVTGSGKTevy---a~lI~~~ 192 (805)
+=.-+.+|..||++.+..|.. |. .-=+|-|=-|-|||-+- |+-|.+-
T Consensus 180 ~~~~~~~~~~aL~~yt~~Lt~~A~~GkiDPLIGRE~EleRtiQvLCRR~KNNPl~VGEPGVGKTAI~EGLA~~I~~~ 256 (774)
T TIGR02639 180 DTDKAKKQQDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIVEGLAQRIAEG 256 (774)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 66520046569988415489998608878734566887423332034567887204488864489999999986415
No 234
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.77 E-value=0.095 Score=31.64 Aligned_cols=60 Identities=15% Similarity=0.219 Sum_probs=46.5
Q ss_pred HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 99999988739733799863376469999999997----199789993163468999999998678
Q gi|254780991|r 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFP 218 (805)
Q Consensus 157 i~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp 218 (805)
++++..|+..| .-.++-|-||+|||...++++.. .|.+++++..|.+ ..++..|+-+..-
T Consensus 3 LD~~~gG~~~G-~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm~-~~~~~~R~~s~~~ 66 (242)
T cd00984 3 LDNLTGGLQPG-DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS-KEQLLQRLLASES 66 (242)
T ss_pred HHHHHCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHHH
T ss_conf 23431699998-1899996899999999999999999977995999933353-8899999999982
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.75 E-value=0.17 Score=29.74 Aligned_cols=67 Identities=22% Similarity=0.314 Sum_probs=47.8
Q ss_pred CCCCCCHHHHHHHHH---HHHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 888884389999999---988739733799863376469999999997---19978999316346899999999867898
Q gi|254780991|r 147 YHPSGDQPAAIAQLL---KGIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 (805)
Q Consensus 147 ~~P~gdQ~~Ai~~L~---~~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp~n 220 (805)
+.|. .+.+|+..+. +.+..+ ...+|+|=.|+|||.+.+.+.-+ .|.+++++ -++.++.+++.-|.++
T Consensus 83 ~~~~-~~~~~l~~~~~~~~~~~~~-~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~-----~~~el~~~Lk~~~~~~ 155 (254)
T COG1484 83 FQPG-IDKKALEDLASLVEFFERG-ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI-----TAPDLLSKLKAAFDEG 155 (254)
T ss_pred CCCH-HHHHHHHHHHHHHHHHCCC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE-----EHHHHHHHHHHHHHCC
T ss_conf 8855-6699999999999873258-8289989999879999999999999839849998-----8599999999987455
No 236
>KOG1805 consensus
Probab=94.75 E-value=0.047 Score=33.90 Aligned_cols=125 Identities=18% Similarity=0.274 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 884389999999988739733799863376469999999997---19978999316346899999999867898389986
Q gi|254780991|r 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226 (805)
Q Consensus 150 ~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~ 226 (805)
--||.+|+.+.... ..+.+.+|.-|+|||-++..+|+- .||.+|+-+=.-+--.-+.-.++. |+-..+.+
T Consensus 671 N~dQr~A~~k~L~a----edy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~-~~i~~lRL-- 743 (1100)
T KOG1805 671 NNDQRQALLKALAA----EDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKG-FGIYILRL-- 743 (1100)
T ss_pred CHHHHHHHHHHHHC----CCHHEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHC-CCCCEEEC--
T ss_conf 88999999998730----332203269989812259999999997388189985056788999998750-67110344--
Q ss_pred ECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHH------HHHHHHHH--CCCCEEEECCHHHHCCCCCHHH-H--HCCEE
Q ss_conf 213444421015554321022103588999999------99999985--4998499827789616898347-7--22579
Q gi|254780991|r 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR------HSATRSLL--ERNDCIVVSSVSCIYGIGSVES-Y--SQMIV 295 (805)
Q Consensus 227 S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R------~~a~~~l~--~~~~~IVVgsrSAIfgl~~P~~-~--lglII 295 (805)
-++..++++++..- ......+. -+...||.+|=- |++.|.- + -...|
T Consensus 744 -------------------G~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TCl---gi~~plf~~R~FD~cI 801 (1100)
T KOG1805 744 -------------------GSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCL---GINHPLFVNRQFDYCI 801 (1100)
T ss_pred -------------------CCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECC---CCCCHHHHCCCCCEEE
T ss_conf -------------------872224468998712344545339999997289767999715---7886555214267899
Q ss_pred EEECCCCC
Q ss_conf 99419811
Q gi|254780991|r 296 QLKIGDSV 303 (805)
Q Consensus 296 vdEehd~~ 303 (805)
+||-.+-+
T Consensus 802 iDEASQI~ 809 (1100)
T KOG1805 802 IDEASQIL 809 (1100)
T ss_pred ECCCCCCC
T ss_conf 86511114
No 237
>PRK08006 replicative DNA helicase; Provisional
Probab=94.75 E-value=0.35 Score=27.38 Aligned_cols=63 Identities=11% Similarity=0.218 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999988739733799863376469999999997----1997899931634689999999986789
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
..++.+..|+..| .-.+|-|=+|.|||-..++++.. .|+|+++..-|.+ ..|++.|+-+-...
T Consensus 212 ~~LD~~t~Gl~~G-~LiviaaRPsmGKTalalnia~~~a~~~~~~V~~fSlEMs-~~ql~~Rlla~~s~ 278 (471)
T PRK08006 212 DDLNKKTAGLQPS-DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP-GEQIMMRMLASLSR 278 (471)
T ss_pred HHHHHHHCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHHCC
T ss_conf 8898641688217-3899994699876999999999999866995799816799-99999999997447
No 238
>PRK13767 ATP-dependent helicase; Provisional
Probab=94.72 E-value=0.32 Score=27.65 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=77.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHH-HHHHHHC-----------CCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 88884389999999988739733799863376469999-9999971-----------99789993163468999999998
Q gi|254780991|r 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM-AKVIEAM-----------QRPAIVMAPNKILAAQLYSEFKN 215 (805)
Q Consensus 148 ~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevy-a~lI~~~-----------gr~aLvLvPei~La~QL~~rfk~ 215 (805)
+|+.-|.+||..+.+ | +..|+.-=||||||+-+ +-++.++ +-.+|+++|=++|+..+...+..
T Consensus 32 ~p~~~Q~~a~~~i~~----G-~~~Li~ApTGsGKTlAaflp~l~~l~~~~~~~~~~~~~~~LyIsPLkAL~~D~~r~L~~ 106 (878)
T PRK13767 32 TFTPPQRYAIPLIHE----G-KNVLISSPTGSGKTLAAFLGIIDELFRLAEEGELEDSVYCIYVSPLRALNNDIHRNLEE 106 (878)
T ss_pred CCCHHHHHHHHHHHC----C-CCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 999899999999967----9-98899899981399999999999998500036778872899968479889999998886
Q ss_pred -------HC---CC----CEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHH
Q ss_conf -------67---89----83899862134444210155543210221035889999999999998549984998277896
Q gi|254780991|r 216 -------FF---PH----NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281 (805)
Q Consensus 216 -------~F---p~----n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAI 281 (805)
.+ |- -.|+..|+-. + ..+| +++....+.|+|.|--.+
T Consensus 107 pl~~i~~~~~~~g~~~~~i~v~vr~GDT--------------------~-----~~er----~r~~~~pp~ILiTTPEsL 157 (878)
T PRK13767 107 PLEEIREIAKERGIELPEIRHAVRTGDT--------------------S-----SYEK----QKMLRKPPHILITTPETL 157 (878)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCC--------------------C-----HHHH----HHHHHCCCCEEECCHHHH
T ss_conf 9999999987527887774477636999--------------------9-----9999----999748998798798999
Q ss_pred CC-CCCH-----HHHHCCEEEEECCCC
Q ss_conf 16-8983-----477225799941981
Q gi|254780991|r 282 YG-IGSV-----ESYSQMIVQLKIGDS 302 (805)
Q Consensus 282 fg-l~~P-----~~~lglIIvdEehd~ 302 (805)
.- +..| +.++..+|+||.|+-
T Consensus 158 ~lll~~~~~~~~l~~l~~VIvDE~H~l 184 (878)
T PRK13767 158 AILLNSPKFREKLRTVKWVIVDEIHSL 184 (878)
T ss_pred HHHHCCHHHHHHHCCCCEEEECCCHHH
T ss_conf 999549679998558999998171675
No 239
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=94.69 E-value=0.36 Score=27.28 Aligned_cols=61 Identities=23% Similarity=0.217 Sum_probs=43.4
Q ss_pred HHHHHHHHHHH--HHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 38999999998--8739733799863376469999999997---1997899931634689999999986789
Q gi|254780991|r 153 QPAAIAQLLKG--IHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 153 Q~~Ai~~L~~~--l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
.+..+..|..+ ++.+ +..+|.|-+|+|||.....+..+ .|.+|+++. ++.|..+++.-+.+
T Consensus 31 ~~~~i~~L~~~~~i~~~-~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~-----~~~L~~~l~~~~~~ 96 (178)
T pfam01695 31 DRRLIAELAGLDWIEQA-ENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTR-----TPDLVEQLKRARGD 96 (178)
T ss_pred CHHHHHHHHCCCCHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-----CHHHHHHHHHHHHC
T ss_conf 99999988559742158-76899899998789999999999998698599996-----16799999987526
No 240
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.57 E-value=0.39 Score=27.07 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=24.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHC---CCCEEEEECC
Q ss_conf 7998633764699999999971---9978999316
Q gi|254780991|r 171 QLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPN 202 (805)
Q Consensus 171 qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPe 202 (805)
.+|-|.||+|||=+.+++.... |+++.+++=.
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99989999988999999999999769928999748
No 241
>PRK06921 hypothetical protein; Provisional
Probab=94.55 E-value=0.27 Score=28.26 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=34.3
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 9733799863376469999999997----19978999316346899999999867
Q gi|254780991|r 167 REKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFF 217 (805)
Q Consensus 167 g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~F 217 (805)
+....+|+|=+|||||+.-..++.+ .|.+||++. .+++..+++.-|
T Consensus 115 ~~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~-----~~~~~~~lk~~~ 164 (265)
T PRK06921 115 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP-----FVEGFGDLKDDF 164 (265)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE-----HHHHHHHHHHHH
T ss_conf 76627997289898899999999999996297199988-----799999999888
No 242
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=94.54 E-value=0.039 Score=34.54 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=26.2
Q ss_pred CEEEEEEECCCCHHHHHHHHHH---HCCCCEEEE
Q ss_conf 3379986337646999999999---719978999
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVM 199 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~---~~gr~aLvL 199 (805)
++-|+||=||||||..+-++.+ +.|-+|+|-
T Consensus 209 Qh~L~~GTtG~GKs~~lr~LL~~iR~rGd~AIiY 242 (613)
T TIGR02759 209 QHILIHGTTGSGKSVALRKLLRWIRQRGDRAIIY 242 (613)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 2526645417438999999999998639858998
No 243
>pfam10412 TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Probab=94.54 E-value=0.085 Score=31.98 Aligned_cols=43 Identities=26% Similarity=0.512 Sum_probs=33.1
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHH
Q ss_conf 397337998633764699999999971---9978999316346899
Q gi|254780991|r 166 SREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQ 208 (805)
Q Consensus 166 ~g~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~Q 208 (805)
...++.++.|-||||||..+.++|... |.+++|+=|--.++..
T Consensus 13 ~~~~H~lviG~tGsGKT~~i~~~i~~~~~~~~s~iv~DpKGe~~~~ 58 (386)
T pfam10412 13 SETQHILIVGTTGTGKTQALRELLDQIRARGDRAIIYDPTGTFVER 58 (386)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
T ss_conf 7767589988999988879999999999779919999587368898
No 244
>KOG0239 consensus
Probab=94.47 E-value=0.048 Score=33.83 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=11.0
Q ss_pred CCCCCCCCCEEEEECCC
Q ss_conf 35787771179996288
Q gi|254780991|r 644 EGLDIPECGLVAILDAD 660 (805)
Q Consensus 644 kGlD~p~v~lV~i~dAD 660 (805)
.++.+|+++.+-|-+.+
T Consensus 476 ~~~~V~~~t~~~V~s~~ 492 (670)
T KOG0239 476 GNLMVPLLTVIKVGSSE 492 (670)
T ss_pred CCEECCCCEEEECCCHH
T ss_conf 84653553587449878
No 245
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.46 E-value=0.41 Score=26.91 Aligned_cols=109 Identities=21% Similarity=0.242 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHCCC----------CEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 3899999999887397----------337998633764699999999971997899931634689999999986789838
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE----------KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~----------~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V 222 (805)
..+.|.-|.+..++.| +..-|-|=||.|||=+.|.+.++. . ..+..|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~IALVGPTGVGKTTTIAKLAArf---------------------~--~~~KkV 272 (436)
T PRK11889 216 EEEVIKYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQF---------------------H--GKKKTV 272 (436)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHH---------------------H--CCCCEE
T ss_conf 99999999999887403101336417179998999988899999999998---------------------6--169808
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC-----CCCEEEECCHHHHCCCCCHHHH---HCCE
Q ss_conf 9986213444421015554321022103588999999999999854-----9984998277896168983477---2257
Q gi|254780991|r 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-----RNDCIVVSSVSCIYGIGSVESY---SQMI 294 (805)
Q Consensus 223 ~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~-----~~~~IVVgsrSAIfgl~~P~~~---lglI 294 (805)
.+- ..||| |..|...|.. +=+++|+-+.+.+-....-+.. ..+|
T Consensus 273 ALI--------------TtDTY--------------RIGAVEQLKTYAeIMgVPV~VV~dp~eL~~AL~~lkdka~~DLI 324 (436)
T PRK11889 273 GFI--------------TTDHS--------------RIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYI 324 (436)
T ss_pred EEE--------------ECCCC--------------HHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCCEE
T ss_conf 999--------------80663--------------47699999999998499439968889999999987633688889
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999419811178753234
Q gi|254780991|r 295 VQLKIGDSVEQKELLSSL 312 (805)
Q Consensus 295 IvdEehd~~~~~~~~~~l 312 (805)
++|-.|-+..-.....++
T Consensus 325 LIDTAGRS~RD~~~I~EL 342 (436)
T PRK11889 325 LIDTAGKNYRASETVEEM 342 (436)
T ss_pred EEECCCCCCCCHHHHHHH
T ss_conf 992989884689999999
No 246
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.46 E-value=0.13 Score=30.73 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 3899999999887-39733799863376469999999997
Q gi|254780991|r 153 QPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 153 Q~~Ai~~L~~~l~-~g~~~qlL~GVTGSGKTevya~lI~~ 191 (805)
-.+=|+.+.+=|. ....--+|.|=-|-|||-+.=.+..+
T Consensus 178 Rd~Ei~r~i~IL~Rr~KNNpiLVGepGVGKTAIvEGLA~r 217 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHH
T ss_conf 3699999999998732489721279998799999999999
No 247
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=94.44 E-value=0.069 Score=32.65 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=30.2
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 397337998633764699999999971997899931634689999999986789
Q gi|254780991|r 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 166 ~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
...+..+|.|-||||||.+.-++ ++.|-|+|=| -.|+.---|-||.
T Consensus 125 ~~~~~~vl~G~TG~GKT~iL~~L-~~~G~qviDL-------EglAnHRGS~FG~ 170 (311)
T TIGR03167 125 QPFPLIVLGGMTGSGKTELLHAL-ANAGAQVLDL-------EGLANHRGSSFGA 170 (311)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH-HHCCCCCCCH-------HHHHHCCCCCCCC
T ss_conf 46876998788887789999999-9769974258-------9986314653468
No 248
>KOG4280 consensus
Probab=94.43 E-value=0.045 Score=34.08 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=55.3
Q ss_pred CCEEEEECCCCCCCHHHHHH----HHHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHH----HH
Q ss_conf 75477518888884389999----9999887397337-998633764699999999971997899931634689----99
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIA----QLLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA----QL 209 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~----~L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~----QL 209 (805)
+.|.+..-|.+...|..-.+ .|++..-+|+..+ +=||-||||||++|.-. . .+..+++| +|
T Consensus 52 ~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQtGsGKTyTM~G~------~----~~~~Giipraf~~l 121 (574)
T KOG4280 52 KSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGP------D----PELRGLIPRAFEHL 121 (574)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECC------C----HHHCCCCHHHHHHH
T ss_conf 8733235546997799999987189999985446843886225789873477478------8----44278506899999
Q ss_pred HHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 99999867898389986213444
Q gi|254780991|r 210 YSEFKNFFPHNAVEYFVSYYDYY 232 (805)
Q Consensus 210 ~~rfk~~Fp~n~V~~f~S~~~~y 232 (805)
.......=......+-+||.-.|
T Consensus 122 F~~I~~~~~~~~f~vrvS~lEiY 144 (574)
T KOG4280 122 FRHIDERKEKTRFLVRVSYLEIY 144 (574)
T ss_pred HHHHHHCCCCCEEEEEEEHHHHH
T ss_conf 99997414563478985357777
No 249
>KOG0240 consensus
Probab=94.37 E-value=0.13 Score=30.71 Aligned_cols=86 Identities=20% Similarity=0.342 Sum_probs=55.5
Q ss_pred CCEEEEECCCCCCCHHH----HHHHHHHHHHCCCC-EEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 75477518888884389----99999998873973-37998633764699999999971997899931634689999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPA----AIAQLLKGIHSREK-VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~----Ai~~L~~~l~~g~~-~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
.+|...--|.|+.-|.+ |+..++..+-.|+. ...-+|-||||||.+|-.+.... .+.++.|-++.++
T Consensus 49 ~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~--------~~~GIipRi~~di 120 (607)
T KOG0240 49 KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDP--------EEMGIIPRILNDI 120 (607)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCCCCH--------HHCCCHHHHHHHH
T ss_conf 64000030599711999999988999999865665158996578888512302567872--------3137478999999
Q ss_pred HHHC---CCC-EEEEEEECCCCC
Q ss_conf 9867---898-389986213444
Q gi|254780991|r 214 KNFF---PHN-AVEYFVSYYDYY 232 (805)
Q Consensus 214 k~~F---p~n-~V~~f~S~~~~y 232 (805)
=... ++| .+.+=|||+-.|
T Consensus 121 F~~Iys~~~n~efhVkVsy~EIY 143 (607)
T KOG0240 121 FDHIYSMEENLEFHVKVSYFEIY 143 (607)
T ss_pred HHHHHCCCCCCEEEEEEEEEHHH
T ss_conf 99986276563699999852124
No 250
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.35 E-value=0.25 Score=28.44 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=23.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCC--CEEEEECC
Q ss_conf 799863376469999999997199--78999316
Q gi|254780991|r 171 QLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPN 202 (805)
Q Consensus 171 qlL~GVTGSGKTevya~lI~~~gr--~aLvLvPe 202 (805)
.|.-|-||||||-+++.++...++ +.-|++=|
T Consensus 4 iLitG~TGSGKTTtl~all~~i~~~~~~~IiTiE 37 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 9998999997999999999853637883699964
No 251
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=94.34 E-value=0.06 Score=33.10 Aligned_cols=34 Identities=32% Similarity=0.581 Sum_probs=28.1
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHC----CCCEEEEECC
Q ss_conf 337998633764699999999971----9978999316
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAM----QRPAIVMAPN 202 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~----gr~aLvLvPe 202 (805)
++.-..|.||||||.+..-++++. +-++||+=|.
T Consensus 24 rH~aIlg~TGsGKS~tv~vLl~~l~~~~~~~vlVfDpH 61 (218)
T pfam01935 24 RHFAILGSTGSGKSNTVAVLLEELLEKKGATVLIFDPH 61 (218)
T ss_pred HHEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 21478726999769999999999985479978998288
No 252
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=94.31 E-value=0.36 Score=27.34 Aligned_cols=286 Identities=16% Similarity=0.182 Sum_probs=153.6
Q ss_pred HHHHHHH---------HHHHHHHHCC-CHHHHHHHHHCCCCCH---HHH--HHHHHHHHCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 1677641---------3456664233-1368888874022100---036--77775101023234321000367532100
Q gi|254780991|r 8 FPKKDSR---------IQSISTRVDD-LDYFSFEEKQLEVDKT---MVA--DAMRRIRSEAGKHRKNAAKRMLIHQRENT 72 (805)
Q Consensus 8 ~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (805)
|||.|.- |+.|+.=|.+ +.||.=-|+.+|+-++ +-+ |++++++==+|-++ +++-+.|+.--.+
T Consensus 242 fPA~HyV~p~e~~~~Ai~~I~~EL~eRl~~f~~~~kllEaQRL~qRT~yDLEMl~e~G~C~GIEN--YSRhl~GR~~GEp 319 (667)
T TIGR00631 242 FPASHYVTPEERLERAIKEIEKELEERLKYFEEQGKLLEAQRLKQRTEYDLEMLREMGYCSGIEN--YSRHLSGRKPGEP 319 (667)
T ss_pred ECCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCH--HCCCCCCCCCCCC
T ss_conf 05400025804799999999999999999998779517888898868877888750673377000--0002167776315
Q ss_pred HHHHHCCHHHHHHH---H-------------HHHHHHHHHCCHHHHHHHHHHHHHCC---------CHH-------HHCC
Q ss_conf 02320124556542---2-------------67743211147558999999998739---------603-------2057
Q gi|254780991|r 73 ASKGEFQSQSSISM---S-------------EKQTREISEQTMTPSVQALARLIQSD---------NPL-------LKNG 120 (805)
Q Consensus 73 ~~~~~~~~~~~~~~---~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~-------~~~~ 120 (805)
+ .-+.||+ | .|+=++|-.+..+. =+.||+-| ||| .=+-
T Consensus 320 P------~tLlDYF~gfP~DfLlviDESHVT~PQ~~GMY~GD~SR----K~~LVeYGFRLPSAlDNRPLkfeEF~~~~~Q 389 (667)
T TIGR00631 320 P------YTLLDYFIGFPEDFLLVIDESHVTLPQIGGMYNGDRSR----KQTLVEYGFRLPSALDNRPLKFEEFEERINQ 389 (667)
T ss_pred C------CCHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHH----HHHHHHCCCCCCHHCCCCCCCHHHHHHHCCC
T ss_conf 9------64776504688650898840257502213441304676----5433202775300135878987999985598
Q ss_pred CCCCCCCCCCCCCCC------------CC--CCCEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEECCCCHHHHH
Q ss_conf 402666788874215------------88--77547751888888438-9999999988739733799863376469999
Q gi|254780991|r 121 KIWTPHRSWSINNHS------------KD--ITFFQMQTDYHPSGDQP-AAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185 (805)
Q Consensus 121 ~~~~~~~~~~~~~~~------------~~--~~~f~l~~~~~P~gdQ~-~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevy 185 (805)
-+++..-| .+++-+ +| ++|--- =.|+.-|= .=+.+|.+.++.
T Consensus 390 ~vyVSATP-G~~E~e~S~~~vvEQiiRPTGLlDP~i~---VRP~~gQvdDL~~EI~~R~~~------------------- 446 (667)
T TIGR00631 390 VVYVSATP-GDYELEQSGGNVVEQIIRPTGLLDPEIE---VRPTDGQVDDLLSEIRQRVAR------------------- 446 (667)
T ss_pred EEEEECCC-CHHHHHHHCCCEEEEEECCCCCCCCEEE---EECCCCHHHHHHHHHHHHHHC-------------------
T ss_conf 89996388-5899973269158998737786488368---835851588889999999972-------------------
Q ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCC--EEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHH-HHHHH
Q ss_conf 99999719978999316346899999999867898--3899862134444210155543210221035889999-99999
Q gi|254780991|r 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN--AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR-MRHSA 262 (805)
Q Consensus 186 a~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n--~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~-~R~~a 262 (805)
|--+||. |||-.|++++-.||.+- +|.|.|| +||. +|.+-
T Consensus 447 -------~ERvLVT----TLTKkMAEdLTdYl~E~Gikv~YLHS--------------------------eIdt~ER~ei 489 (667)
T TIGR00631 447 -------NERVLVT----TLTKKMAEDLTDYLKELGIKVRYLHS--------------------------EIDTLERVEI 489 (667)
T ss_pred -------CCCEEEE----EHHHHHHHHHHHHHHCCCCEEEEECC--------------------------HHHHHHHHHH
T ss_conf -------8948998----20167788999997058837987145--------------------------5789999999
Q ss_pred HHHHHCCCCEEEECC---HHHHCCCCCHHHHHCCEE-EEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEE--
Q ss_conf 999854998499827---789616898347722579-99419811178753234311765633877545331872478--
Q gi|254780991|r 263 TRSLLERNDCIVVSS---VSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI-- 336 (805)
Q Consensus 263 ~~~l~~~~~~IVVgs---rSAIfgl~~P~~~lglII-vdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~IL-- 336 (805)
.+.|+.|+-.|.||= |=-|= .|+=.|=.|+ -|+||= ++..-.+ =.-..||--.+.|-|+
T Consensus 490 irdLR~G~fDVLVGINLLREGLD---lPEVSLVAILDADKEGF-------LRSerSL-----IQTIGRAARN~~G~VilY 554 (667)
T TIGR00631 490 IRDLRLGEFDVLVGINLLREGLD---LPEVSLVAILDADKEGF-------LRSERSL-----IQTIGRAARNVNGKVILY 554 (667)
T ss_pred HHHHCCCCCEEEEECCHHHCCCC---CHHHHHHHHHCCCCCCC-------CCCCCHH-----HHHHHHHHHCCCCEEEEE
T ss_conf 99844788408860002002465---11488997632788899-------8663027-----889888752579659997
Q ss_pred -ECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf -3178887788873104442002221016664001110000100000000256367887545589
Q gi|254780991|r 337 -EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400 (805)
Q Consensus 337 -dsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i~ 400 (805)
|-.|.|++. ++ +|.++.| .-=.-|...|-++|.+..+.....+.
T Consensus 555 AD~iT~sM~~-AI------~ET~RRR-------------~~Q~~YNe~HgItP~ti~K~i~~~~~ 599 (667)
T TIGR00631 555 ADKITDSMQK-AI------EETERRR-------------KIQIAYNEEHGITPQTIRKKIKDILD 599 (667)
T ss_pred CCCCCHHHHH-HH------HHHHHHH-------------HHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 2870078999-99------9878889-------------99999997538978854056888777
No 253
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=94.30 E-value=0.18 Score=29.60 Aligned_cols=92 Identities=23% Similarity=0.394 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHH---CCCCEEEEEEECCCCHHHHHHHHHHHC----CCCEEEE----ECCHHHHHHHHHHHHHHCCCCE
Q ss_conf 3899999999887---397337998633764699999999971----9978999----3163468999999998678983
Q gi|254780991|r 153 QPAAIAQLLKGIH---SREKVQLLLGVTGSGKTFTMAKVIEAM----QRPAIVM----APNKILAAQLYSEFKNFFPHNA 221 (805)
Q Consensus 153 Q~~Ai~~L~~~l~---~g~~~qlL~GVTGSGKTevya~lI~~~----gr~aLvL----vPei~La~QL~~rfk~~Fp~n~ 221 (805)
|..|+.++.+.++ ......||.|=||.|| |+.|++|.+. .||-+.+ .||--|-. +.||+.+
T Consensus 228 ~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGK-ElvAraIH~~S~R~~kPfV~~NCAAlPesLlES-------ELFGHeK 299 (550)
T COG3604 228 RSPAMRQLLKEIEVVAKSDSTVLIRGETGTGK-ELVARAIHQLSPRRDKPFVKLNCAALPESLLES-------ELFGHEK 299 (550)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHH-------HHHCCCC
T ss_conf 69999999999998726898079845888538-999999987375557986663122253788888-------8745332
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCC
Q ss_conf 89986213444421015554321022103588999999999999854998499827789616898347722579994198
Q gi|254780991|r 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301 (805)
Q Consensus 222 V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd 301 (805)
-++ + =.+++|..-| -..+-|-.+.||.||
T Consensus 300 GAF-------------------------------------------T----GA~~~r~GrF----ElAdGGTLFLDEIGe 328 (550)
T COG3604 300 GAF-------------------------------------------T----GAINTRRGRF----ELADGGTLFLDEIGE 328 (550)
T ss_pred CCC-------------------------------------------C----CCHHCCCCCE----EECCCCEEECHHHCC
T ss_conf 233-------------------------------------------3----5101467635----655797576022036
Q ss_pred CC
Q ss_conf 11
Q gi|254780991|r 302 SV 303 (805)
Q Consensus 302 ~~ 303 (805)
-.
T Consensus 329 lP 330 (550)
T COG3604 329 LP 330 (550)
T ss_pred CC
T ss_conf 78
No 254
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.27 E-value=0.44 Score=26.62 Aligned_cols=161 Identities=14% Similarity=0.115 Sum_probs=96.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHH-HHHC------------CCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 8884389999999988739733799863376469999999-9971------------99789993163468999999998
Q gi|254780991|r 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV-IEAM------------QRPAIVMAPNKILAAQLYSEFKN 215 (805)
Q Consensus 149 P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~l-I~~~------------gr~aLvLvPei~La~QL~~rfk~ 215 (805)
||.=|.+||-.+.+ | +..+..-=||||||..|+=- ++++ +-.+|||+|.--|+.|++..++.
T Consensus 32 PTpIQ~~aIP~iL~----G-kDvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aLILvPTRELA~QI~~~~~~ 106 (574)
T PRK04537 32 CTPIQALTLPVALP----G-GDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (574)
T ss_pred CCHHHHHHHHHHHC----C-CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 99999999999957----9-988998489888999999999999983744345778996199977989999999999999
Q ss_pred HCCCC--EEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCC-----CCHH
Q ss_conf 67898--3899862134444210155543210221035889999999999998549984998277896168-----9834
Q gi|254780991|r 216 FFPHN--AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI-----GSVE 288 (805)
Q Consensus 216 ~Fp~n--~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl-----~~P~ 288 (805)
+...- .+...+...+ ++.+ ...+.....|||||--.+.-+ ..-+
T Consensus 107 l~~~~~lr~~~l~GG~~------------------------~~~q-----~~~L~~g~dIVVaTPGRLld~L~~~~~~~L 157 (574)
T PRK04537 107 FGADLGLRFALVYGGVD------------------------YDKQ-----RELLQQGVDVIIATPGRLIDYVKQHKVVSL 157 (574)
T ss_pred HHCCCCCEEEEEECCCC------------------------HHHH-----HHHHCCCCCEEEECHHHHHHHHHHCCCCCC
T ss_conf 86458977999979966------------------------8899-----998735999899898999999981798653
Q ss_pred HHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHCCCC
Q ss_conf 77225799941981117875323431176563387754533---1872478317888778887310444
Q gi|254780991|r 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF---RVCGDSIEIFPSHLEDVAWRVSMFG 354 (805)
Q Consensus 289 ~~lglIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f---~~rg~ILdsatps~Es~~~Rie~f~ 354 (805)
.++.++|+||...-.+ .+|.. ++...-..+ ..+-.++=|||-+.+-..+...++.
T Consensus 158 ~~vk~LVLDEAD~LLd----------~gF~~-di~~IL~~lP~~~~rQ~iLfSATl~~~V~~la~~~l~ 215 (574)
T PRK04537 158 HACEICVLDEADRMFD----------LGFIK-DIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMN 215 (574)
T ss_pred CCEEEEEECCCHHHHC----------CCCHH-HHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCC
T ss_conf 3315899627326542----------87799-9999999666556855899983277799999999779
No 255
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=94.27 E-value=0.026 Score=35.85 Aligned_cols=31 Identities=39% Similarity=0.533 Sum_probs=25.0
Q ss_pred HHHHHHHHHCCCCEE-EEEEECCCCHHHHHHH
Q ss_conf 999999887397337-9986337646999999
Q gi|254780991|r 157 IAQLLKGIHSREKVQ-LLLGVTGSGKTFTMAK 187 (805)
Q Consensus 157 i~~L~~~l~~g~~~q-lL~GVTGSGKTevya~ 187 (805)
++.|++.+-+|+..+ +-||-||||||++|..
T Consensus 12 v~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G 43 (186)
T cd01363 12 VGPLLQSALDGYNVCIFAYGQTGSGKTYTMEG 43 (186)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCEEECC
T ss_conf 89999999788746999967999987528235
No 256
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.22 E-value=0.073 Score=32.49 Aligned_cols=111 Identities=21% Similarity=0.300 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHH-CCCCEEEEECCHHH-HHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 3899999999887397--33799863376469999999997-19978999316346-89999999986789838998621
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKIL-AAQLYSEFKNFFPHNAVEYFVSY 228 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~-~gr~aLvLvPei~L-a~QL~~rfk~~Fp~n~V~~f~S~ 228 (805)
|....+.|..++..|. +..|++|.-|.|||-+ |+++++ ++-...+ ..+-+. .--....+++.+.++.+
T Consensus 26 Q~~~~~~l~n~i~~~~~~~aylf~G~rG~GKTt~-Ari~ak~lnc~~~~-~~~~~~~~c~~c~~c~~i~~~~~~------ 97 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTS-ARIIAKAVNCSALI-TENTTIKTCEKCTNCISFNNHNHP------ 97 (507)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHH-HHHHHHHHCCCCCC-CCCCCCCCCCCCHHHHHHHCCCCC------
T ss_conf 3999999999997399663477458799788999-99999996799988-889988888887678998658999------
Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHH-HHCCEEEEECCCCC
Q ss_conf 3444421015554321022103588999999999999854998499827789616898347-72257999419811
Q gi|254780991|r 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES-YSQMIVQLKIGDSV 303 (805)
Q Consensus 229 ~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~-~lglIIvdEehd~~ 303 (805)
-.+|-|++.|..+|..| .|.+. +-| +|.. .-...|+||+|.-+
T Consensus 98 --------------dv~EiDaas~~gv~~ir-----~l~~~----------~~~---~p~~~~~kv~iidE~hmls 141 (507)
T PRK06645 98 --------------DIIEIDAASKTSVDDIR-----RIIES----------AEY---KPLQGKHKIFIIDEVHMLS 141 (507)
T ss_pred --------------CEEEEECCCCCCHHHHH-----HHHHH----------CCC---CCCCCCEEEEEECCHHHCC
T ss_conf --------------85996378888889999-----99863----------551---7876743589952142248
No 257
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
Probab=94.11 E-value=0.19 Score=29.43 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=5.1
Q ss_pred HHHHHHHHCC
Q ss_conf 7766543127
Q gi|254780991|r 671 LIQTIGRAAR 680 (805)
Q Consensus 671 ~~q~~GRagR 680 (805)
|.-.+++.+-
T Consensus 944 YLdai~q~~~ 953 (1108)
T COG3857 944 YLDAIKQNAP 953 (1108)
T ss_pred HHHHHHHHHH
T ss_conf 9999987404
No 258
>PRK08727 hypothetical protein; Validated
Probab=94.08 E-value=0.48 Score=26.35 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=56.3
Q ss_pred HHHHHHHHHHH-CCCCEEEEEEECCCCHHHHHHHH---HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 99999999887-39733799863376469999999---997199789993163468999999998678983899862134
Q gi|254780991|r 155 AAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKV---IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 (805)
Q Consensus 155 ~Ai~~L~~~l~-~g~~~qlL~GVTGSGKTevya~l---I~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~ 230 (805)
.++..+..-.. .......|+|-+|||||-..-.+ ..+.|+.+.+|. -........+-+...=..+.|++ |
T Consensus 27 ~~~a~l~~~~~~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~-l~~~~~~~~~~l~~le~~~ll~i-----D 100 (233)
T PRK08727 27 GLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLP-LQAAAGRLRDALEALEGRSLVAL-----D 100 (233)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE-HHHHHHHHHHHHHHHCCCCEEEE-----E
T ss_conf 99999998743888898999899999889999999999982799728844-78853202567753103897898-----5
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHH
Q ss_conf 444210155543210221035889999999999998549984998277896
Q gi|254780991|r 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281 (805)
Q Consensus 231 ~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAI 281 (805)
- |+. .+-+++++..=+..++++.+....++++++.+-
T Consensus 101 D-------------id~-i~g~~~~e~aLFhL~N~~~~~~~~ll~ts~~~P 137 (233)
T PRK08727 101 G-------------VDS-IAGQREDEVALFDFHNRARAAGITLLYTARQMP 137 (233)
T ss_pred C-------------CHH-CCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 5-------------011-269827999999999999861983899779895
No 259
>KOG0389 consensus
Probab=94.03 E-value=0.49 Score=26.29 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCC--CCEEEEHHHH
Q ss_conf 10168899999986302321246621478999999998635966873257645789999999973189--8699984587
Q gi|254780991|r 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK--FDVLVGINLL 642 (805)
Q Consensus 565 ~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~--~diLvgt~~~ 642 (805)
.+.+..|-.-..+....|.|||+|.---.|-+-|-.+|.-.++.-.-+||...-..|+.++.+|...+ +-.|..|--=
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 03276999987887616877999608889999999999862733786148864138999998626677557999861467
Q ss_pred HCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCC--CEEEEE
Q ss_conf 53578777117999628856744460137766543127-998--669998
Q gi|254780991|r 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVN--SKVILY 689 (805)
Q Consensus 643 akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~--G~~il~ 689 (805)
.=|+.+---..|+++|-|- ++-.=-|.--|+-| |.. =.|+-+
T Consensus 840 G~GINLt~An~VIihD~dF-----NP~dD~QAEDRcHRvGQtkpVtV~rL 884 (941)
T KOG0389 840 GFGINLTCANTVIIHDIDF-----NPYDDKQAEDRCHRVGQTKPVTVYRL 884 (941)
T ss_pred CCEECCCCCCEEEEEECCC-----CCCCCCHHHHHHHHHCCCCEEEEEEE
T ss_conf 6502112364589960577-----97552046888876178540699998
No 260
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.98 E-value=0.35 Score=27.42 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=35.4
Q ss_pred EEEEEEECCCCHHHHHH--HHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 37998633764699999--999971997899931634689999999986789838998
Q gi|254780991|r 170 VQLLLGVTGSGKTFTMA--KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 (805)
Q Consensus 170 ~qlL~GVTGSGKTevya--~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f 225 (805)
+.+..|-||||||..++ +++ +.+.+++|.-|---|...++ +++..+|. .|.+|
T Consensus 1 H~lvig~tGsGKt~~~vip~ll-~~~~s~vv~D~Kgel~~~t~-~~~~~~G~-~v~v~ 55 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLL-TWPGSVVVLDPKGENFELTS-EHRRALGR-KVFVF 55 (384)
T ss_pred CEEEECCCCCCHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHH-HHHHHCCC-EEEEE
T ss_conf 9799889999731899999998-18998899948789999999-99998799-68998
No 261
>KOG0921 consensus
Probab=93.98 E-value=0.13 Score=30.70 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=65.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCC-C------------CCCCHHHHH
Q ss_conf 966873257645789999999973189869998458753578777117999628856-7------------444601377
Q gi|254780991|r 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE-G------------FLRSKTSLI 672 (805)
Q Consensus 606 ~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~-~------------f~~~~~~~~ 672 (805)
.+.-.-+|+-....++.++.+..-.|..||++-|+.+.--+-+..|+.|++.+--+. + -..+..+++
T Consensus 674 ~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~e 753 (1282)
T KOG0921 674 KYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLE 753 (1282)
T ss_pred HCCCCCCHHHCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEEEEEEEECCCCCEEEEEEECCCCCCHH
T ss_conf 03466502201447664136755455654013453366764204506887520011112104432034455226643067
Q ss_pred HHHHHHCCCCCCEEEEEE
Q ss_conf 665431279986699982
Q gi|254780991|r 673 QTIGRAARNVNSKVILYA 690 (805)
Q Consensus 673 q~~GRagR~~~G~~il~a 690 (805)
|+-||+||-+.|.+....
T Consensus 754 qr~gr~grvR~G~~f~lc 771 (1282)
T KOG0921 754 QRKGRAGRVRPGFCFHLC 771 (1282)
T ss_pred HHCCCCCEECCCCCCCCC
T ss_conf 642667413566231210
No 262
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.93 E-value=0.51 Score=26.15 Aligned_cols=32 Identities=31% Similarity=0.572 Sum_probs=23.7
Q ss_pred HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 999887397337998633764699999999971
Q gi|254780991|r 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 160 L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~ 192 (805)
|...+..+ ...+.-|-||||||-.+-.++...
T Consensus 142 L~~~V~~r-~nilI~G~TgsGKTTll~all~~i 173 (320)
T PRK13894 142 IIAAVRAH-RNILVIGGTGSGKTTLVNAIINEM 173 (320)
T ss_pred HHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999728-758998588865689999998632
No 263
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.90 E-value=0.5 Score=26.23 Aligned_cols=87 Identities=26% Similarity=0.299 Sum_probs=49.6
Q ss_pred HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCC--EEEE--ECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
Q ss_conf 999887397337998633764699999999971997--8999--316346899999999867898389986213444421
Q gi|254780991|r 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP--AIVM--APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 (805)
Q Consensus 160 L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~--aLvL--vPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpE 235 (805)
|...+..+ +..+.-|-||||||-.+-.++...... .+.+ +||..+. -.|.|.++.+.-. +.
T Consensus 155 L~~aV~~r-~NIlIsGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL~l~-----------~~n~V~l~~~~~~--~g- 219 (343)
T PRK13851 155 LHACVVGR-LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIP-----------HENHVRLLYSKNG--AG- 219 (343)
T ss_pred HHHHHHCC-CCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCC-----------CCCEEEEEECCCC--CC-
T ss_conf 99999769-889998889861999999999628965527996115002589-----------9996899965898--88-
Q ss_pred CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCH
Q ss_conf 0155543210221035889999999999998549984998277
Q gi|254780991|r 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 (805)
Q Consensus 236 ay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsr 278 (805)
...++ ++--...+|+-+.|.||||=+
T Consensus 220 ------------~~~vt-----~~~Ll~~aLRmrPDRIivGEv 245 (343)
T PRK13851 220 ------------LGAVT-----AEHLLQASLRMRPDRILLGEM 245 (343)
T ss_pred ------------CCCCC-----HHHHHHHHHCCCCCEEEEEEE
T ss_conf ------------58397-----999999986079982899852
No 264
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=93.89 E-value=0.012 Score=38.38 Aligned_cols=113 Identities=14% Similarity=0.069 Sum_probs=61.3
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHH
Q ss_conf 00000256367887545589989989988754433211001244447777533211201451011333114465556202
Q gi|254780991|r 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460 (805)
Q Consensus 381 Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~t 460 (805)
|.+|......+...+.......++.+ .+.....+......|....++.++..++...+.+.++|+..+.|+.|
T Consensus 156 p~~~~~~l~~r~~~~~~p~~~~~d~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~f~n~rg~~~~~~c~~c------ 228 (524)
T TIGR00595 156 PQRHLLVLPRRVGGRKPPEVKLIDLR-KEPRQGNRSFLSPELLTALEETLAAGEQAILFLNRRGYSPNLLCRSC------ 228 (524)
T ss_pred CHHHHHHHHHHHCCCCCCEEEEEECC-CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECCC------
T ss_conf 20321110132057757515676221-00021321022589999999887416706898615566530000026------
Q ss_pred HHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH----HCCCCCCCCCCCCCCC
Q ss_conf 330265442132101234475445432456541333235766554443222111010012----1555454446867542
Q gi|254780991|r 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC----LRPTTIVVSATPGSWE 536 (805)
Q Consensus 461 L~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~----~~~~~~~~satPg~~e 536 (805)
|+.+.|..|...+.||.... ...|+.|.+..|-+..
T Consensus 229 ----------------------------------------g~~~~cp~c~~~~~~h~~~~~g~p~l~ch~c~~~~~~p~~ 268 (524)
T TIGR00595 229 ----------------------------------------GYVLECPNCDVSLTYHKKEGNGQPKLRCHYCGYQEPVPKT 268 (524)
T ss_pred ----------------------------------------CCCEECCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCC
T ss_conf ----------------------------------------7501056653023553213688620122105766777543
Q ss_pred CHHH
Q ss_conf 0132
Q gi|254780991|r 537 LEQC 540 (805)
Q Consensus 537 ~e~~ 540 (805)
+..|
T Consensus 269 cp~c 272 (524)
T TIGR00595 269 CPAC 272 (524)
T ss_pred CCCC
T ss_conf 6444
No 265
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.89 E-value=0.4 Score=26.98 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=20.2
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 337998633764699999999971
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~ 192 (805)
+...|.|-||+|||=+.|.+.+..
T Consensus 175 ~vi~lVGPTGvGKTTTiAKLAa~~ 198 (388)
T PRK12723 175 RIFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998998875787999999999
No 266
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.85 E-value=0.18 Score=29.55 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 88888438999999998873-9733799863376469999999997
Q gi|254780991|r 147 YHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 147 ~~P~gdQ~~Ai~~L~~~l~~-g~~~qlL~GVTGSGKTevya~lI~~ 191 (805)
+.|-=--.+=|..+.+=|.. ...--+|.|=-|-|||-+.=.+..+
T Consensus 186 lDPvIGRd~EI~r~iqIL~Rr~KNNPiLVGepGVGKTAIvEGLA~r 231 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHH
T ss_conf 9988694999999999998624799746579998799999999999
No 267
>KOG0246 consensus
Probab=93.79 E-value=0.029 Score=35.54 Aligned_cols=43 Identities=33% Similarity=0.475 Sum_probs=29.6
Q ss_pred EEEEECCCCCCCHHHH------HHHHHHHH-HCCCCEEEEEEECCCCHHHHH
Q ss_conf 4775188888843899------99999988-739733799863376469999
Q gi|254780991|r 141 FQMQTDYHPSGDQPAA------IAQLLKGI-HSREKVQLLLGVTGSGKTFTM 185 (805)
Q Consensus 141 f~l~~~~~P~gdQ~~A------i~~L~~~l-~~g~~~qlL~GVTGSGKTevy 185 (805)
|+.. |.--+++..+ ++-|++-| +.|...+.-||-||||||++|
T Consensus 260 F~FD--yaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TM 309 (676)
T KOG0246 260 FRFD--YAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTM 309 (676)
T ss_pred EEEE--EECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEC
T ss_conf 7776--6316666527898875567889998277254565125788741551
No 268
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.77 E-value=0.44 Score=26.63 Aligned_cols=58 Identities=14% Similarity=0.258 Sum_probs=41.3
Q ss_pred HHHHH-HHHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 99999-988739733799863376469999999997---1997899931634689999999986
Q gi|254780991|r 157 IAQLL-KGIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNF 216 (805)
Q Consensus 157 i~~L~-~~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~ 216 (805)
++++. -|+..| ...++.|-+|||||-.-++.+.+ .|.++++++=|-+- .|++...+++
T Consensus 21 lD~~l~GG~p~g-~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee~~-~~~~~~~~~~ 82 (241)
T PRK06067 21 IDRKLGGGIPFG-SLILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTENTS-KSYLKQMESL 82 (241)
T ss_pred HHHHCCCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCH-HHHHHHHHHC
T ss_conf 786506997799-0899980799887999999999998679829999942899-9999999983
No 269
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.74 E-value=0.18 Score=29.48 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 38999999998873-9733799863376469999999997
Q gi|254780991|r 153 QPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~-g~~~qlL~GVTGSGKTevya~lI~~ 191 (805)
-.+=|..+.+=|.. ...--+|.|=-|-|||-+.=.+..+
T Consensus 184 Rd~EI~r~i~IL~RR~KNNpiLvGepGVGKTAIvEGLA~r 223 (823)
T CHL00095 184 RDKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQR 223 (823)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHH
T ss_conf 5699999999997732488502379998799999999997
No 270
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.70 E-value=0.41 Score=26.87 Aligned_cols=42 Identities=29% Similarity=0.340 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 438999999998873-973379986337646999999999719
Q gi|254780991|r 152 DQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIEAMQ 193 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~-g~~~qlL~GVTGSGKTevya~lI~~~g 193 (805)
.|...+..+...+.. ..+..+|+|-+|+|||.+...+..+.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~ill~GppGtGKT~la~~ia~~~~ 44 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8579999999998187998089989999886599999999712
No 271
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.64 E-value=0.57 Score=25.79 Aligned_cols=83 Identities=29% Similarity=0.308 Sum_probs=46.0
Q ss_pred HHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCC----CEEEE---ECCHHHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 999988739733799863376469999999997199----78999---31634689999999986789838998621344
Q gi|254780991|r 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR----PAIVM---APNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 (805)
Q Consensus 159 ~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr----~aLvL---vPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~ 231 (805)
-|...++.+ ...+.-|-||||||-.+-.++....+ .=+|. +||..+ -..|.|.++.+.
T Consensus 136 ~L~~aV~~r-~nilVsGgTGSGKTTllnaL~~~i~~~~p~eRivtIEDt~EL~~-----------~~~n~v~l~~~~--- 200 (323)
T PRK13833 136 TIRSAISSR-LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQC-----------AAENAVLLHTSD--- 200 (323)
T ss_pred HHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCC-----------CCCCEEEEECCC---
T ss_conf 999999818-96899917777568999999986402893233999457501146-----------788777875169---
Q ss_pred CCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHH
Q ss_conf 442101555432102210358899999999999985499849982778
Q gi|254780991|r 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 (805)
Q Consensus 232 yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrS 279 (805)
.+ + ++--...+|+-+.|.||||=+.
T Consensus 201 ------------------~v----~-~~~Ll~~aLRmrPDRIivGEvR 225 (323)
T PRK13833 201 ------------------TV----D-MARLLKSTMRLRPDRIIVGEVR 225 (323)
T ss_pred ------------------CC----C-HHHHHHHHHCCCCCEEEEECCC
T ss_conf ------------------86----9-9999999744699758883006
No 272
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.63 E-value=0.52 Score=26.07 Aligned_cols=39 Identities=31% Similarity=0.438 Sum_probs=27.5
Q ss_pred HHHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 99999999-88739733799863376469999999997199
Q gi|254780991|r 155 AAIAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 (805)
Q Consensus 155 ~Ai~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr 194 (805)
..|+.+.. |+..| .-..+.|-.|||||.+-+++...+..
T Consensus 6 ~~lD~~L~GGi~~G-~itEi~G~~GsGKTql~lqla~~~~~ 45 (235)
T cd01123 6 KALDELLGGGIETG-SITEIFGEFGSGKTQLCHQLAVTVQL 45 (235)
T ss_pred HHHHHHCCCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 78996507996478-79999999998499999999999842
No 273
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.62 E-value=0.57 Score=25.77 Aligned_cols=160 Identities=20% Similarity=0.130 Sum_probs=96.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH-HHHHCC------CC-EEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 8888438999999998873973379986337646999999-999719------97-899931634689999999986789
Q gi|254780991|r 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK-VIEAMQ------RP-AIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 148 ~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~-lI~~~g------r~-aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
+|+.=|.+||-.+..| +..+-..-||||||.-|+= +++... .+ +|||+|.--||.|+++.++.+-..
T Consensus 51 ~pt~IQ~~~iP~~l~g-----~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 51 EPTPIQLAAIPLILAG-----RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCHHHHHHCHHHHCC-----CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 9898999658776369-----99799868987178999999999974004557775699779999999999999999862
Q ss_pred C---EEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHC---CC-CCHHHHHC
Q ss_conf 8---38998621344442101555432102210358899999999999985499849982778961---68-98347722
Q gi|254780991|r 220 N---AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY---GI-GSVESYSQ 292 (805)
Q Consensus 220 n---~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIf---gl-~~P~~~lg 292 (805)
. .+..++...+ +..+ . .+|..| +.|||||--=+. .- -.-+..+.
T Consensus 126 ~~~~~~~~i~GG~~--------------------~~~q-------~-~~l~~g-~~ivVaTPGRllD~i~~~~l~l~~v~ 176 (513)
T COG0513 126 LGGLRVAVVYGGVS--------------------IRKQ-------I-EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVE 176 (513)
T ss_pred CCCCEEEEEECCCC--------------------HHHH-------H-HHHHCC-CCEEEECCCHHHHHHHCCCCCCCCEE
T ss_conf 45842999989989--------------------8999-------9-987249-98999796089999864885546501
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHCC
Q ss_conf 57999419811178753234311765633877545331-8724783178887788873104
Q gi|254780991|r 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR-VCGDSIEIFPSHLEDVAWRVSM 352 (805)
Q Consensus 293 lIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~-~rg~ILdsatps~Es~~~Rie~ 352 (805)
..|.||...-. .+++.. ++...-.... .+-.++-|||.+-+-..+...+
T Consensus 177 ~lVlDEADrml----------d~gf~~-~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~ 226 (513)
T COG0513 177 TLVLDEADRML----------DMGFID-DIEKILKALPPDRQTLLFSATMPDDIRELARRY 226 (513)
T ss_pred EEEECCHHHHC----------CCCCHH-HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 89967617663----------887689-999999738977489999824898999999997
No 274
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.60 E-value=0.18 Score=29.57 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=38.3
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 5188888843899999999887397--337998633764699999999971
Q gi|254780991|r 144 QTDYHPSGDQPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 144 ~~~~~P~gdQ~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~~ 192 (805)
.+.|.|= |++|++.|...++.|. +.-|++|--|+||+.+-..+++..
T Consensus 2 ~~~~~PW--q~~~~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~l 50 (319)
T PRK08769 2 TSAFSPW--QQRAFDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV 50 (319)
T ss_pred CCCCCCC--CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8555877--689999999999769942068758999878999999999998
No 275
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.57 E-value=0.19 Score=29.33 Aligned_cols=65 Identities=15% Similarity=0.334 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHHHHHHHHHC----------CCCEEEEECCHHHH-----HHHHHHHHHH
Q ss_conf 38999999998873-97337998633764699999999971----------99789993163468-----9999999986
Q gi|254780991|r 153 QPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIEAM----------QRPAIVMAPNKILA-----AQLYSEFKNF 216 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~-g~~~qlL~GVTGSGKTevya~lI~~~----------gr~aLvLvPei~La-----~QL~~rfk~~ 216 (805)
-.+=|..+.+-|.. ...--+|.|=-|-|||-+.=.+..+. ++..+-|-----+| .++.+|+++.
T Consensus 183 Rd~EI~r~i~IL~RR~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~LDlg~L~AGakyRGeFEeRLk~i 262 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 262 (857)
T ss_pred CHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHH
T ss_conf 29999999999702578997587899988999999999999838999788169024733887861476521179999999
Q ss_pred C
Q ss_conf 7
Q gi|254780991|r 217 F 217 (805)
Q Consensus 217 F 217 (805)
.
T Consensus 263 l 263 (857)
T PRK10865 263 L 263 (857)
T ss_pred H
T ss_conf 9
No 276
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.54 E-value=0.55 Score=25.92 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=34.0
Q ss_pred HHHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECC
Q ss_conf 99999999-88739733799863376469999999997---19978999316
Q gi|254780991|r 155 AAIAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPN 202 (805)
Q Consensus 155 ~Ai~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPe 202 (805)
.+++++.. |+..| ...++.|-.|||||-+-+++..+ .|..+|++.-|
T Consensus 10 ~~lD~~LgGGi~~G-~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidtE 60 (224)
T PRK09361 10 KSLDELLGGGIERG-TITQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDTE 60 (224)
T ss_pred HHHHHHHCCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 89998626998888-7999989999859999999999999749909996787
No 277
>KOG0701 consensus
Probab=93.53 E-value=0.027 Score=35.69 Aligned_cols=77 Identities=18% Similarity=0.139 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC-----------C--CCCC
Q ss_conf 78999999997318986999845875357877711799962885674446013776654312-----------7--9986
Q gi|254780991|r 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA-----------R--NVNS 684 (805)
Q Consensus 618 ~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRag-----------R--~~~G 684 (805)
...|.....+|+.+++..++.|--.-.|+|+--+.+|...+ ..-+..+++|-.|++. | +..|
T Consensus 707 ~~~rn~~~~~~~~~~v~~~~~pss~~~g~~~~~~~~v~~~~-----~~~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~ 781 (1606)
T KOG0701 707 GMYRNDDQPQFYVAEVLPLLAPSSLFPGLDYETFNEVYRFK-----YALTITSLNQSLLDVDHTSSRLNLLVPRGDNQKG 781 (1606)
T ss_pred HHHHCCCCCCEEEEEEEEECCCHHCCCCCCHHEEEEEEECC-----CCCHHHHCCCCCCCCCCCHHHHCCCCCHHHCCCC
T ss_conf 64424664414654312302631017996621002356404-----1001221221003555531232025753331466
Q ss_pred EEEEEECCCCHHHHH
Q ss_conf 699982489889999
Q gi|254780991|r 685 KVILYADTITKSIQL 699 (805)
Q Consensus 685 ~~il~ad~~t~~~~~ 699 (805)
.+...+...|..+..
T Consensus 782 ~~l~~~s~~~e~~~~ 796 (1606)
T KOG0701 782 SALPNSSSETERLKD 796 (1606)
T ss_pred CEEECCCCHHHHHHH
T ss_conf 245415640244268
No 278
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=93.53 E-value=0.17 Score=29.74 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=46.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEE-EEEEECCCCHHHHHHHHHH---HCCCCEEEEECCH
Q ss_conf 54775188888843899999999887-----397337-9986337646999999999---7199789993163
Q gi|254780991|r 140 FFQMQTDYHPSGDQPAAIAQLLKGIH-----SREKVQ-LLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNK 203 (805)
Q Consensus 140 ~f~l~~~~~P~gdQ~~Ai~~L~~~l~-----~g~~~q-lL~GVTGSGKTevya~lI~---~~gr~aLvLvPei 203 (805)
.-+|.+-|+|.+.|-+|+..|...+- .+.+.- +--.--|-|||+|-+|+.- +.|+.+|++==+.
T Consensus 70 ~~~l~aa~~P~s~~~Ea~R~lRs~l~~~~~~~~~~~LaItS~~pGEGKS~vAaNLA~~~Aq~G~RvLLVDaDL 142 (274)
T TIGR03029 70 SPDLIAAYQPFSPQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANL 142 (274)
T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9899877389988999999999999998457888389996899999899999999999996799199995888
No 279
>PRK06893 DNA replication initiation factor; Validated
Probab=93.44 E-value=0.45 Score=26.57 Aligned_cols=106 Identities=15% Similarity=0.174 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHHHHHHHH---HCCCCEEEEECC--HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8438999999998873-973379986337646999999999---719978999316--3468999999998678983899
Q gi|254780991|r 151 GDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPN--KILAAQLYSEFKNFFPHNAVEY 224 (805)
Q Consensus 151 gdQ~~Ai~~L~~~l~~-g~~~qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPe--i~La~QL~~rfk~~Fp~n~V~~ 224 (805)
|.=.+++..|.+...+ +.+...|+|-+|||||...-.+.. ..+++++++--+ ..+.+...+.+++. +.|.+
T Consensus 21 ~~n~~~~~~l~~~~~~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~~~~~~l~~l~~~---d~l~i 97 (229)
T PRK06893 21 DNNLLLLDSLRKNFIDLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQ---DLVCL 97 (229)
T ss_pred CCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHC---CEEEE
T ss_conf 874999999997550246987999899999889999999999997189859997377564069999876547---97999
Q ss_pred EEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCC-CCEEEECCH
Q ss_conf 862134444210155543210221035889999999999998549-984998277
Q gi|254780991|r 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSV 278 (805)
Q Consensus 225 f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~-~~~IVVgsr 278 (805)
--.+ . ..-+++++..=+...+++.+. ...|++++.
T Consensus 98 --DDi~----------------~-i~g~~~~e~~lF~l~N~l~~~~~~~ll~ss~ 133 (229)
T PRK06893 98 --DDLQ----------------A-VIGNEEWELAIFDLFNRIKESGKTLLLISAN 133 (229)
T ss_pred --ECHH----------------H-HCCCHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf --6723----------------4-2488389999999999999759917998579
No 280
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.41 E-value=0.22 Score=28.87 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHCCC-CEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 3899999999887397-337998633764699999999971
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~-~~qlL~GVTGSGKTevya~lI~~~ 192 (805)
|+.+++.|..-+++|. .+-+++|--|+|||-+..-+.+++
T Consensus 20 q~~i~~~L~~~~~~~~~phlLf~GPpG~GKTt~A~~lA~~l 60 (337)
T PRK12402 20 QESVVDHLSALAASGNLPHLVVYGPSGSGKTAAVRALAREL 60 (337)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79999999999977998769888929848999999999996
No 281
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=93.31 E-value=0.23 Score=28.76 Aligned_cols=132 Identities=16% Similarity=0.259 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---C--CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 43899999999887397337998633764699999999971---9--978999316346899999999867898389986
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---Q--RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~---g--r~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~ 226 (805)
.|..|++.|.+ . .-..+.|.+|||||++-+...-+. + +..+|.=|.+.... + -.|+|.+.-+-+.
T Consensus 8 ~Q~~~~~~l~~----~-~iv~~~GpAGtGKT~la~~~al~~l~~~~~~kiii~Rp~v~~g~----~-iGfLPG~~~eK~~ 77 (205)
T pfam02562 8 GQKRYVEAIRK----N-DIVFGIGPAGTGKTYLAVAAAVDALKDGKVKRIILTRPAVEAGE----K-LGFLPGDLEEKVD 77 (205)
T ss_pred HHHHHHHHHHC----C-CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC----C-CCCCCCCHHHHHH
T ss_conf 89999999717----9-80799899986099999999999997189437999757712577----5-4558897899999
Q ss_pred ECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHH
Q ss_conf 21344442101555432102210358899999999999985499849982778961689834772257999419811178
Q gi|254780991|r 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306 (805)
Q Consensus 227 S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~ 306 (805)
|... |-.|.+ ++. ..-+++..+.+ +..|-+-+.+-+-|. ++-..+|+..|-++..++
T Consensus 78 -------p~~~-p~~d~l-------~~~---~~~~~~~~l~~-~~~Ie~~pl~~iRGr----Tf~n~~iIvDEaQN~t~~ 134 (205)
T pfam02562 78 -------PYLR-PLYDAL-------YDM---LGAEKVEKLIE-RGVIEIAPLAYMRGR----TLNDAFIILDEAQNTTPE 134 (205)
T ss_pred -------HHHH-HHHHHH-------HHH---HCHHHHHHHHH-CCCEEECCHHHHCCC----CCCCCEEEEECHHCCCHH
T ss_conf -------9999-999999-------987---28999999997-597566146765547----625688999722139999
Q ss_pred HHHHHHHHCC
Q ss_conf 7532343117
Q gi|254780991|r 307 ELLSSLVKQQ 316 (805)
Q Consensus 307 ~~~~~l~~~~ 316 (805)
+...-+...+
T Consensus 135 ~lk~ilTRiG 144 (205)
T pfam02562 135 QMKMFLTRIG 144 (205)
T ss_pred HHHHHHHHCC
T ss_conf 9999984217
No 282
>PRK08082 consensus
Probab=93.29 E-value=0.4 Score=26.96 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999988739733799863376469999999997----1997899931634689999999986789
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
..++++..|+..| .-.+|-|=+|.|||-..++++.. .|+++++..-|.+ ..|+..|+-+....
T Consensus 191 ~~LD~lt~G~~~g-~LiviaaRPsmGKTa~alnia~~~a~~~~~~V~~fSlEM~-~~~l~~R~la~~s~ 257 (453)
T PRK08082 191 TELDRMTAGFQRN-DLIIVAARPSVGKTAFALNIAQNVATKTDENVAIFSLEMG-ADQLVMRMLCAEGN 257 (453)
T ss_pred HHHHHHHCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHCCCC
T ss_conf 8888641477758-5799986788757899999999999855994899731389-89999999971558
No 283
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.58 Score=25.74 Aligned_cols=67 Identities=22% Similarity=0.240 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHCCC-CE-EEEEEECCCCHHHHHHHHHHHCC-----C-CEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 43899999999887397-33-79986337646999999999719-----9-789993163468999999998678
Q gi|254780991|r 152 DQPAAIAQLLKGIHSRE-KV-QLLLGVTGSGKTFTMAKVIEAMQ-----R-PAIVMAPNKILAAQLYSEFKNFFP 218 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~-~~-qlL~GVTGSGKTevya~lI~~~g-----r-~aLvLvPei~La~QL~~rfk~~Fp 218 (805)
+|-..+......+-.|. .. .+++|-||+|||.+.-.+.++.. + .+=|=+.+..---|++..+-.-|+
T Consensus 24 ~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 24 EEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHC
T ss_conf 899999999999855899860799889998732899999999973315675799951307878799999999826
No 284
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.22 E-value=0.58 Score=25.73 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHH
Q ss_conf 43899999999887397337998633764699999999971--99789993163468999999
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSE 212 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~--gr~aLvLvPei~La~QL~~r 212 (805)
+-.+|+..+..++..|...-++.|.-|||||.+-=.+.+.. ++-+.|..|+-+++.+...+
T Consensus 35 ~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ 97 (269)
T COG3267 35 DHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLE 97 (269)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 015999997777751785599974477763699999998557885179983576301788999
No 285
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=93.22 E-value=0.66 Score=25.32 Aligned_cols=45 Identities=9% Similarity=0.177 Sum_probs=18.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 7998633764699999999971-----9978999316346899999999867898
Q gi|254780991|r 171 QLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKILAAQLYSEFKNFFPHN 220 (805)
Q Consensus 171 qlL~GVTGSGKTevya~lI~~~-----gr~aLvLvPei~La~QL~~rfk~~Fp~n 220 (805)
.++|++. -|-|-..+-+|++. +-+.|+- +-|+-=.++.+++||+.
T Consensus 52 vWiHaaS-VGEv~a~~pLv~~l~~~~P~~~ilvT----t~T~Tg~e~a~~~~~~~ 101 (419)
T COG1519 52 VWIHAAS-VGEVLAALPLVRALRERFPDLRILVT----TMTPTGAERAAALFGDS 101 (419)
T ss_pred EEEEECC-HHHHHHHHHHHHHHHHHCCCCCEEEE----ECCCCHHHHHHHHCCCC
T ss_conf 7999644-66788889999999976899878999----52763799999876987
No 286
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.22 Score=28.95 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=29.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 888884389999999988739-733799863376469999999997
Q gi|254780991|r 147 YHPSGDQPAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 147 ~~P~gdQ~~Ai~~L~~~l~~g-~~~qlL~GVTGSGKTevya~lI~~ 191 (805)
+.|----.+.|..+.+=|-.. ..--+|-|=-|.|||-+.=.+..+
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~r 214 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQR 214 (786)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHH
T ss_conf 8877374799999999983568899847668988899999899999
No 287
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.13 E-value=0.2 Score=29.14 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHCCC-CEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 3899999999887397-337998633764699999999971
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~-~~qlL~GVTGSGKTevya~lI~~~ 192 (805)
|..+++.|..-+++|. .+-+++|-.|+|||=+...+++++
T Consensus 21 ~~~~~~~L~~~i~~~~~phlLf~GppG~GKTt~a~~la~~l 61 (318)
T PRK00440 21 QEEIVERLKSFVKEKNMPHLLFAGPPGTGKTTAALALAREL 61 (318)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69999999999987998669888959988999999999997
No 288
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=93.08 E-value=0.14 Score=30.47 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=31.4
Q ss_pred CEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHH
Q ss_conf 33799863376469999999997---1997899931634689
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAA 207 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~ 207 (805)
++.+++|-||||||-++-+++.+ .|..|+|.=|.=+.+.
T Consensus 186 qH~li~GTtGtGKS~~ir~LL~qIR~RGdrAIIyD~~G~Fv~ 227 (732)
T PRK13700 186 QNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVK 227 (732)
T ss_pred HEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHH
T ss_conf 126774688888999999999999972995899939985339
No 289
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=93.07 E-value=0.14 Score=30.39 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=43.0
Q ss_pred HHHHHHHHHH----HHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHH-HHHHHHHH
Q ss_conf 8999999998----87397337998633764699999999971997899931634689-99999998
Q gi|254780991|r 154 PAAIAQLLKG----IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA-QLYSEFKN 215 (805)
Q Consensus 154 ~~Ai~~L~~~----l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~-QL~~rfk~ 215 (805)
-.+++.+... |+.|+ +.=|.|=||.|||=+-+++.++.+|||++|.=+--|+. -|++++..
T Consensus 4 t~~v~~v~~R~l~yL~~G~-PvHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g 69 (265)
T TIGR02640 4 TDAVKRVTSRALRYLKSGY-PVHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAG 69 (265)
T ss_pred CHHHHHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 7237999998766322788-66744788855689999999736896899865823265442315467
No 290
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=93.04 E-value=0.38 Score=27.10 Aligned_cols=48 Identities=38% Similarity=0.427 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH-HCCCCEEEE
Q ss_conf 9999999988739733799863376469999999997199789993163468999999998-678983899
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN-FFPHNAVEY 224 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~-~Fp~n~V~~ 224 (805)
++...|.+.+.+. +--|.-|=|||||| |||.=+..+.-. .||+++|..
T Consensus 127 aQ~d~l~~Av~ar-~NIlv~GGTGSGKT---------------------TLaNAlla~I~~l~~P~dR~vI 175 (315)
T TIGR02782 127 AQRDVLREAVAAR-KNILVVGGTGSGKT---------------------TLANALLAEIAKLNDPDDRVVI 175 (315)
T ss_pred HHHHHHHHHHHHC-CCEEEECCCCCCHH---------------------HHHHHHHHHHHHCCCCCCEEEE
T ss_conf 8999999999712-98899814588579---------------------9999999988521699961899
No 291
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.99 E-value=0.71 Score=25.08 Aligned_cols=111 Identities=14% Similarity=0.197 Sum_probs=60.2
Q ss_pred CCCCCCHHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHHHHHHH---HHCCCCEEEEECCH--HHHHHHHHHHHHHCCCC
Q ss_conf 8888843899999999887-397337998633764699999999---97199789993163--46899999999867898
Q gi|254780991|r 147 YHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVI---EAMQRPAIVMAPNK--ILAAQLYSEFKNFFPHN 220 (805)
Q Consensus 147 ~~P~gdQ~~Ai~~L~~~l~-~g~~~qlL~GVTGSGKTevya~lI---~~~gr~aLvLvPei--~La~QL~~rfk~~Fp~n 220 (805)
|-+ |+-.+++..+..... .+.+...|+|-+|||||-.+-.+. .+.++.+.++.-+. ...+++.+.++++ +
T Consensus 24 Fi~-g~n~~~~~al~~~~~~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~~~~~~l~~l~~~---d 99 (235)
T PRK08084 24 FYP-GDNDSLLAALQNVLRQEHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAWFVPEVLEGMEQL---S 99 (235)
T ss_pred CCC-CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHC---C
T ss_conf 344-886999999999985789876999899998889999999999970798579987798665179999876418---9
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC-CCCEEEECCHHH
Q ss_conf 389986213444421015554321022103588999999999999854-998499827789
Q gi|254780991|r 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSC 280 (805)
Q Consensus 221 ~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~-~~~~IVVgsrSA 280 (805)
.|.+ |-- +. .+-.++++..=+...+++.+ |+..||+++..+
T Consensus 100 ll~i-----DDi-------------~~-i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~ 141 (235)
T PRK08084 100 LVCI-----DNI-------------EC-IAGDELWEMAIFDLYNRILESGKTRLLITGDRP 141 (235)
T ss_pred EEEE-----ECH-------------HH-HCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 8998-----274-------------55-469978999999999999984896699967988
No 292
>PRK05748 replicative DNA helicase; Provisional
Probab=92.89 E-value=0.73 Score=24.98 Aligned_cols=63 Identities=10% Similarity=0.124 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999988739733799863376469999999997----1997899931634689999999986789
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
..++.+..|+..| .-.++-|=+|.|||-..++++.. .|+|+++..-|.+ +.|+..|+-+....
T Consensus 191 ~~LD~~~~G~~~g-~LiviaaRP~mGKTa~alnia~~~a~~~~~~v~~fSlEM~-~~~l~~R~la~~s~ 257 (448)
T PRK05748 191 RDLDKMTSGLQPN-DLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMG-AESLVMRMLCAEGR 257 (448)
T ss_pred HHHHHHHCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHHHHHHHC
T ss_conf 7899982798867-3799984799876899999999999856980899817788-88999999999746
No 293
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=92.86 E-value=0.44 Score=26.62 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=24.8
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHC-------CCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 337998633764699999999971-------99789993163468999999998678
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAM-------QRPAIVMAPNKILAAQLYSEFKNFFP 218 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~-------gr~aLvLvPei~La~QL~~rfk~~Fp 218 (805)
.+.++..--|||||-|..+=|+.+ ....|.++=--..|..|-.|+...++
T Consensus 16 gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 16 GPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEEEEHHHHHHHHHHHHHHHC
T ss_conf 986999579986189999999999873895757717789676999999999998738
No 294
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.86 E-value=0.74 Score=24.95 Aligned_cols=107 Identities=19% Similarity=0.224 Sum_probs=67.5
Q ss_pred HHHHHHH-HHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 9999999-9887397337998633764699999999971---99789993163468999999998678983899862134
Q gi|254780991|r 155 AAIAQLL-KGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 (805)
Q Consensus 155 ~Ai~~L~-~~l~~g~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~ 230 (805)
.++.++. -|+..| +-.=++|--|||||-+-++++..+ |..+.++--|=+|-|+-...+-..+-+|.. +
T Consensus 47 ~~LD~~LGGGl~~g-~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~---v---- 118 (279)
T COG0468 47 LALDEALGGGLPRG-RITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLL---V---- 118 (279)
T ss_pred HHHHHHHCCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEE---E----
T ss_conf 55787746886553-589984688765466899998886537980899958999899999998875421536---8----
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC---CCCEEEECCHHHHCCCCCHHHHHC
Q ss_conf 44421015554321022103588999999999999854---998499827789616898347722
Q gi|254780991|r 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE---RNDCIVVSSVSCIYGIGSVESYSQ 292 (805)
Q Consensus 231 ~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~---~~~~IVVgsrSAIfgl~~P~~~lg 292 (805)
+||-.+ +.+..-+-..+.. .-+.|||=|++|.| |..+.+
T Consensus 119 -~~~~~~------------------e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~----r~~~~~ 160 (279)
T COG0468 119 -SQPDTG------------------EQQLEIAEKLARSGAEKIDLLVVDSVAALV----RAEEIE 160 (279)
T ss_pred -ECCCCH------------------HHHHHHHHHHHHHCCCCCCEEEEECCCCCC----HHHHCC
T ss_conf -668977------------------999999999987546887889982574346----365548
No 295
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=92.83 E-value=0.47 Score=26.46 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=23.6
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 998633764699999999971997899931
Q gi|254780991|r 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201 (805)
Q Consensus 172 lL~GVTGSGKTevya~lI~~~gr~aLvLvP 201 (805)
||||.-|+|||.+.-.+..+.+.+.+.+..
T Consensus 2 Ll~GppGtGKT~~a~~la~~~~~~~~~v~~ 31 (131)
T pfam00004 2 LLYGPPGTGKTTLAKAVAKELGAPFIEISG 31 (131)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEECCC
T ss_conf 878999999999999999997898533242
No 296
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.68 E-value=0.46 Score=26.53 Aligned_cols=78 Identities=23% Similarity=0.410 Sum_probs=48.4
Q ss_pred CEEEEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf 3379986337646999999999---7199789993163468999999998678983899862134444210155543210
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~~i 245 (805)
...++.|..|||||-+--.+-. +.|.++++|=- +++|..|++. .|+
T Consensus 8 ~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDG---------D~lR~~~~~~-------gfs--------------- 56 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG---------DELREIFGHS-------GYD--------------- 56 (176)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC---------HHHHHHHCCC-------CCC---------------
T ss_conf 799978999998999999999999975997799886---------8999873658-------989---------------
Q ss_pred HHHCCCCHHHH-HHHHHHHHHHHCCCCEEEECCHHHHC
Q ss_conf 22103588999-99999999985499849982778961
Q gi|254780991|r 246 EKESSINEQID-RMRHSATRSLLERNDCIVVSSVSCIY 282 (805)
Q Consensus 246 ~k~~s~n~~i~-~~R~~a~~~l~~~~~~IVVgsrSAIf 282 (805)
..+..+ ..|......++.....+||.|.-+.|
T Consensus 57 -----~~~R~~n~~r~~~lak~l~~~g~~vIvs~isp~ 89 (176)
T PRK05541 57 -----KESRIEMALKRAKLAAFLADQGMIVIVTTISMF 89 (176)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf -----999999999999999998646980367522798
No 297
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.67 E-value=0.78 Score=24.77 Aligned_cols=126 Identities=21% Similarity=0.262 Sum_probs=74.6
Q ss_pred CCEEEEEEECCCCHHHHHHHHH---HHC--CCCEEEEECCHHH-------HHHHHHHHHHHCCCCEEEEEEECCCCCCCC
Q ss_conf 7337998633764699999999---971--9978999316346-------899999999867898389986213444421
Q gi|254780991|r 168 EKVQLLLGVTGSGKTFTMAKVI---EAM--QRPAIVMAPNKIL-------AAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 (805)
Q Consensus 168 ~~~qlL~GVTGSGKTevya~lI---~~~--gr~aLvLvPei~L-------a~QL~~rfk~~Fp~n~V~~f~S~~~~yqpE 235 (805)
+.+..+||-+|.|||-.+-.+- .+. ++.++++..|-.. -..-..+||.+|-+-.|.+. |=-|
T Consensus 145 yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F~~~~v~al~~~~~~~Fr~~yr~~DvLli----DDiq-- 218 (447)
T PRK00149 145 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKFTNDFVKALRNNAMEEFKEKYRSVDVLLI----DDIQ-- 218 (447)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEE----CHHH--
T ss_conf 7855897799887889999999999985899728995499999999999851869999999972885432----1488--
Q ss_pred CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 01555432102210358899999999999985499849982778961689834772257999419811178753234311
Q gi|254780991|r 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 (805)
Q Consensus 236 ay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~~~~~~l~~~ 315 (805)
+ .+--+.+.-+=+...+.|.+..-+||+++-- +|.+-.++ ++
T Consensus 219 --------f----l~gk~~tqeeff~~fn~l~~~~kqiv~tsd~------~P~~l~~l------~~-------------- 260 (447)
T PRK00149 219 --------F----LAGKEKTQEEFFHTFNALHENNKQIVITSDR------PPKELEGL------ED-------------- 260 (447)
T ss_pred --------H----HHCCHHHHHHHHHHHHHHHHCCCEEEEECCC------CHHHCCCC------CH--------------
T ss_conf --------8----6055779999999999999849968995788------96765651------17--------------
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf 7656338775453318724783178887788
Q gi|254780991|r 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 (805)
Q Consensus 316 ~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~ 346 (805)
. .+..| ..|.++++-+|.+|+.
T Consensus 261 ------r--L~SRf-~~Gl~~~i~~Pd~e~r 282 (447)
T PRK00149 261 ------R--LRSRF-EWGLTVDIEPPDLETR 282 (447)
T ss_pred ------H--HHHHH-HCCEEEECCCCCHHHH
T ss_conf ------7--88676-3762651059999999
No 298
>TIGR01389 recQ ATP-dependent DNA helicase RecQ; InterPro: IPR006293 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0004003 ATP-dependent DNA helicase activity, 0006310 DNA recombination, 0009432 SOS response.
Probab=92.64 E-value=0.58 Score=25.73 Aligned_cols=90 Identities=11% Similarity=0.239 Sum_probs=56.9
Q ss_pred ECCCCHHHHHHHHHHH--------------C-CCCEEEEECCHHHHHHHHHHHHHHCCCC---EEEEEEECCCCCCCCCC
Q ss_conf 3376469999999997--------------1-9978999316346899999999867898---38998621344442101
Q gi|254780991|r 176 VTGSGKTFTMAKVIEA--------------M-QRPAIVMAPNKILAAQLYSEFKNFFPHN---AVEYFVSYYDYYQPEAY 237 (805)
Q Consensus 176 VTGSGKTevya~lI~~--------------~-gr~aLvLvPei~La~QL~~rfk~~Fp~n---~V~~f~S~~~~yqpEay 237 (805)
|||--.-.++.+++++ . |++=+|= +.|..=++++.+++-.+ ++.| |-+++
T Consensus 194 ~~SFdRpNl~~~v~~k~n~~~~l~~yl~~~~~G~SGIIY----a~sR~~VE~~~~~L~s~G~~A~~Y-HAGL~------- 261 (607)
T TIGR01389 194 ISSFDRPNLRFSVVKKNNKKKFLLEYLKKHREGQSGIIY----ASSRKKVEELAERLESQGISALAY-HAGLS------- 261 (607)
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEE----CCCHHHHHHHHHHHHHCCCCEEEC-CCCCC-------
T ss_conf 256775114334312037813689997507999534787----677045899999997479620403-67987-------
Q ss_pred CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEE
Q ss_conf 555432102210358899999999999985499849982778961689834772257999
Q gi|254780991|r 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297 (805)
Q Consensus 238 ~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvd 297 (805)
+..|-+.-+.-+.-+..|||||+. ||+|-=.+|.-.+|-.
T Consensus 262 ------------------~~~R~e~Q~~Fl~d~~~vmVAT~A--FGMGIdKpnVRFViH~ 301 (607)
T TIGR01389 262 ------------------NKVRAENQEDFLYDDVKVMVATNA--FGMGIDKPNVRFVIHA 301 (607)
T ss_pred ------------------HHHHHHHHHHHHHHCCEEEEEEEC--CCCCCCCCCCCEEEEE
T ss_conf ------------------768999975444625548888712--3587478765488863
No 299
>KOG1802 consensus
Probab=92.62 E-value=0.29 Score=28.00 Aligned_cols=63 Identities=29% Similarity=0.499 Sum_probs=50.2
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHH----HHHCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 77518888884389999999988739733799863376469999999----997199789993163468999999998
Q gi|254780991|r 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV----IEAMQRPAIVMAPNKILAAQLYSEFKN 215 (805)
Q Consensus 142 ~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~l----I~~~gr~aLvLvPei~La~QL~~rfk~ 215 (805)
+|++. |..|.+.... ..-.|+.|--|+|||.|-+.+ +++.+-|+||.+|--.-..||+.-...
T Consensus 410 kLN~S------Q~~AV~~VL~-----rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802 410 KLNAS------QSNAVKHVLQ-----RPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred HHCHH------HHHHHHHHHC-----CCCEEEECCCCCCCEEHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 22467------8999999975-----9851554699988331168999999985289569981650028999999986
No 300
>pfam10236 DAP3 Mitochondrial ribosomal death-associated protein 3. This is a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.47 E-value=0.4 Score=26.97 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=33.3
Q ss_pred HHHHHHHHHHCCC-CEEEEEEECCCCHHHHHHHHHHH--CCCCEEEEECC
Q ss_conf 9999999887397-33799863376469999999997--19978999316
Q gi|254780991|r 156 AIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEA--MQRPAIVMAPN 202 (805)
Q Consensus 156 Ai~~L~~~l~~g~-~~qlL~GVTGSGKTevya~lI~~--~gr~aLvLvPe 202 (805)
.++.|.+.-.++. ...+|+|..|||||.+.++++.- .+.=.++=+|+
T Consensus 10 l~~~l~~~~~~~~~~r~vL~G~~GsGKS~~L~q~v~~A~~~~wiVl~vP~ 59 (274)
T pfam10236 10 LTKKLKEADASKKVVRFVLTGERGSGKSVLLAQAMAYALTQGWVVLHVPE 59 (274)
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf 99999874047995189988979977999999999999859989998498
No 301
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.34 E-value=0.86 Score=24.48 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHHHHHHH---HHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 843899999999887-397337998633764699999999---9719978999316346899999999867898389986
Q gi|254780991|r 151 GDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVI---EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226 (805)
Q Consensus 151 gdQ~~Ai~~L~~~l~-~g~~~qlL~GVTGSGKTevya~lI---~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~ 226 (805)
|+=..|+..+....+ .+.+...|+|=+|||||...-.+. .+.++.++++..+.. .. ...+.-..+.+.
T Consensus 20 ~~N~~~~~~l~~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~-~~-~~~~~l~~l~~~------ 91 (226)
T TIGR03420 20 GGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL-AQ-ADPEVLEGLEQA------ 91 (226)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHH-HH-HHHHHHHHCCCC------
T ss_conf 8679999999987646688869998999998899999999998626995799529998-77-539999727448------
Q ss_pred ECCCCCCCCCCCCCCCCCHHHHC---CCCHHHHHHHHHHHHHHHCCCCEEEECCHHH
Q ss_conf 21344442101555432102210---3588999999999999854998499827789
Q gi|254780991|r 227 SYYDYYQPEAYVPRTDTYIEKES---SINEQIDRMRHSATRSLLERNDCIVVSSVSC 280 (805)
Q Consensus 227 S~~~~yqpEay~p~~d~~i~k~~---s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSA 280 (805)
|..+-.|. .-+..++..=+..++.+.+....||+++..+
T Consensus 92 ---------------d~l~iDDi~~i~~~~~~e~~lF~l~N~~~~~~~~ilits~~~ 133 (226)
T TIGR03420 92 ---------------DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred ---------------CEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf ---------------999996633343783789999999999986528289867888
No 302
>PRK04328 hypothetical protein; Provisional
Probab=92.33 E-value=0.42 Score=26.77 Aligned_cols=59 Identities=29% Similarity=0.446 Sum_probs=42.3
Q ss_pred HHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 999999-88739733799863376469999999997---199789993163468999999998678
Q gi|254780991|r 157 IAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFP 218 (805)
Q Consensus 157 i~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp 218 (805)
++++.. |+..| ...|+.|-+|||||-.-+|.+.+ .|.++|+++=|-+ ..|++..+++ ||
T Consensus 13 LD~lL~GGlp~g-s~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyis~eE~-~~~l~~~~~~-~G 75 (250)
T PRK04328 13 MDEILYGGIPER-NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH-PVQVRRNMAQ-FG 75 (250)
T ss_pred HHHHCCCCCCCC-EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHH-CC
T ss_conf 787515998799-699998289999899999999999876997799997279-9999999998-09
No 303
>PRK06762 hypothetical protein; Provisional
Probab=92.30 E-value=0.83 Score=24.57 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=25.4
Q ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3799863376469999999997199789993
Q gi|254780991|r 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200 (805)
Q Consensus 170 ~qlL~GVTGSGKTevya~lI~~~gr~aLvLv 200 (805)
-.+|-|=.|||||-+-.++-++.|+.++++.
T Consensus 4 LIiiRGNSgSGKtT~Ak~L~~~~G~g~lLvs 34 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 8999788888878999999998688857853
No 304
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.28 E-value=0.16 Score=29.96 Aligned_cols=70 Identities=21% Similarity=0.221 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CC---CCEEEEECCHHHHHHHHHHHHHHCCCCE---
Q ss_conf 4389999999988739733799863376469999999997----19---9789993163468999999998678983---
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQ---RPAIVMAPNKILAAQLYSEFKNFFPHNA--- 221 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~g---r~aLvLvPei~La~QL~~rfk~~Fp~n~--- 221 (805)
.|.+|+. ....+.++...-|||||.|+.+=|+. .| ...|+|+=.-.-|..|-+|+...++.+.
T Consensus 13 ~Q~~AV~-------~~~g~~lV~AGaGSGKT~vL~~Ria~Li~~~gv~p~~ILalTFTnkAA~Emk~Rl~~~l~~~~~~~ 85 (722)
T PRK11773 13 KQREAVA-------APLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSILAVTFTNKAAAEMRHRIEQLLGTSQGGM 85 (722)
T ss_pred HHHHHHC-------CCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999980-------999987999738715999999999999982999878828984589999999999998717777888
Q ss_pred -EEEEEEC
Q ss_conf -8998621
Q gi|254780991|r 222 -VEYFVSY 228 (805)
Q Consensus 222 -V~~f~S~ 228 (805)
|.-|||.
T Consensus 86 ~i~TfHSf 93 (722)
T PRK11773 86 WVGTFHGL 93 (722)
T ss_pred EEEEHHHH
T ss_conf 89729999
No 305
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=92.25 E-value=0.87 Score=24.40 Aligned_cols=33 Identities=39% Similarity=0.638 Sum_probs=23.9
Q ss_pred EEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECC
Q ss_conf 37998633764699999999971---9978999316
Q gi|254780991|r 170 VQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPN 202 (805)
Q Consensus 170 ~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPe 202 (805)
..+|-|.||+|||=+.|++.+.. |+.+.+++=.
T Consensus 3 vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~D 38 (196)
T pfam00448 3 VILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAAD 38 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999989999988999999999999779928999758
No 306
>PRK07667 uridine kinase; Provisional
Probab=92.22 E-value=0.53 Score=26.03 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=24.3
Q ss_pred EEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHH
Q ss_conf 98633764699999999971---997899931634689
Q gi|254780991|r 173 LLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAA 207 (805)
Q Consensus 173 L~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~ 207 (805)
+-|.||||||-+-.++.+++ |.+++++--.-...+
T Consensus 19 IaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~~~~ 56 (190)
T PRK07667 19 IDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDHIVE 56 (190)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 77989788999999999998665983799966624265
No 307
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=92.19 E-value=0.64 Score=25.40 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=24.2
Q ss_pred HHHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 99999999-88739733799863376469999999997
Q gi|254780991|r 155 AAIAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 155 ~Ai~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~~ 191 (805)
.+|+.|.. |+..| .-.=++|.-|||||-+-+++.-.
T Consensus 30 ~~LD~lLgGGi~~g-~ITEi~G~~gsGKTQlc~qlav~ 66 (261)
T pfam08423 30 KELDKLLGGGIETG-SITEVFGEFRTGKTQLCHTLCVT 66 (261)
T ss_pred HHHHHHHCCCCCCC-EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 78998737986677-29999899888789999999999
No 308
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=92.06 E-value=0.21 Score=29.01 Aligned_cols=45 Identities=29% Similarity=0.519 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCE
Q ss_conf 88888438999999998873973379986337646999999999719978
Q gi|254780991|r 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196 (805)
Q Consensus 147 ~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~a 196 (805)
|+| ..-+.+.+.|.+=+.-.|..|=||||||.+.=...-.++++.
T Consensus 310 FeP-----~Qk~~fL~Ai~kPqGMvLVTGPTGSGKTVSLYTaLniLN~~~ 354 (577)
T TIGR02538 310 FEP-----DQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTEE 354 (577)
T ss_pred CCH-----HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 888-----899999999707997288626659841687876311257767
No 309
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.96 E-value=0.94 Score=24.17 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=35.7
Q ss_pred EEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 799863376469999999997---1997899931634689999999986
Q gi|254780991|r 171 QLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNF 216 (805)
Q Consensus 171 qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~ 216 (805)
.|+.|-+|||||-.-++.+.+ .|.++|+++-|.+ ..|+...++++
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~-~~~l~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES-PEELIENAESL 49 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHHHC
T ss_conf 1587689999999999999999876997899995079-99999999983
No 310
>PRK08840 replicative DNA helicase; Provisional
Probab=91.94 E-value=0.59 Score=25.68 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999988739733799863376469999999997----1997899931634689999999986789
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
..+..+..|+..| .-.+|-|=+|+|||-..++++.. .|+|+++..-|.+ +.|++.|+-+-...
T Consensus 205 ~~LD~~~~Gl~~G-~LiviaaRPsmGKTalalnia~n~a~~~~~~v~~fSlEMs-~~ql~~Rlls~~s~ 271 (464)
T PRK08840 205 TDLNKKTAGLQGS-DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP-AEQLMMRMLASLSR 271 (464)
T ss_pred HHHHHHCCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHHHHCC
T ss_conf 9998753698757-6799983798736899999999999965996799767799-89999999998538
No 311
>PRK07263 consensus
Probab=91.85 E-value=0.62 Score=25.52 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 9999999988739733799863376469999999997----199789993163468999999998678
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFP 218 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp 218 (805)
..++++..|+..| .-.+|-|=+|.|||-..++++.. .|+++++..-|.+ ..|+..|+-+--.
T Consensus 191 ~~LD~~t~Gl~~G-dLiviaaRPsmGKTa~alnia~~iA~~~~~~V~~fSlEMs-~~ql~~R~la~~~ 256 (453)
T PRK07263 191 RDLDKITTGLHPD-QLIILAARPAVGKTAFVLNIAQNVGTKQKKTVAIFSLEMG-AESLVDRMLAAEG 256 (453)
T ss_pred HHHHHHHCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHHHHHHC
T ss_conf 8799773289978-6899972788847899999999999855982899924699-8999999999861
No 312
>PHA00350 putative assembly protein
Probab=91.85 E-value=0.13 Score=30.72 Aligned_cols=53 Identities=25% Similarity=0.336 Sum_probs=33.5
Q ss_pred EEEEEEECCCCHHH--HHHHHHHH--CCCCEEEEECCHHHHHHHHHHHHHHCCC---CEEEEEEE
Q ss_conf 37998633764699--99999997--1997899931634689999999986789---83899862
Q gi|254780991|r 170 VQLLLGVTGSGKTF--TMAKVIEA--MQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVS 227 (805)
Q Consensus 170 ~qlL~GVTGSGKTe--vya~lI~~--~gr~aLvLvPei~La~QL~~rfk~~Fp~---n~V~~f~S 227 (805)
-.+++|.-|||||. |+.+++.. .||.++-=+|. | -++.|..+||+ .+-.++++
T Consensus 3 I~~~~G~pGSyKS~~av~~~ilPALk~GR~ViTNi~g--l---~le~i~k~~~~~p~~~~liri~ 62 (402)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVITNIPG--L---NLDVFEKVFGEFPDTAELIRIV 62 (402)
T ss_pred EEEEECCCCCCCCEEEEHHHHHHHHHCCCEEEECCCC--C---CHHHHHHHCCCCCCCHHEEEEE
T ss_conf 7998259999766011086768898569989977899--8---8899998717883603227874
No 313
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B; InterPro: IPR014140 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in others. AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. This entry describes the ATP-dependent nuclease subunit B (AddB/RexB) protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous and functionally equivalent, merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function..
Probab=91.84 E-value=0.25 Score=28.45 Aligned_cols=47 Identities=21% Similarity=0.491 Sum_probs=37.9
Q ss_pred EEEEEEECCCCHHHHHHHHHHH------CCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 3799863376469999999997------19978999316346899999999867
Q gi|254780991|r 170 VQLLLGVTGSGKTFTMAKVIEA------MQRPAIVMAPNKILAAQLYSEFKNFF 217 (805)
Q Consensus 170 ~qlL~GVTGSGKTevya~lI~~------~gr~aLvLvPei~La~QL~~rfk~~F 217 (805)
-+.+.|=.|||||.++++=|++ .|+|-++|||+. -|=|+-..|-+-=
T Consensus 3 l~~i~GRaGtGKs~~~i~~Ik~ki~~~p~g~~iillVPdQ-~TFq~E~~l~~~~ 55 (1192)
T TIGR02773 3 LRFIYGRAGTGKSTFIIDEIKQKIKENPLGKPIILLVPDQ-MTFQMEKALLNDI 55 (1192)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCC-CHHHHHHHHHCCC
T ss_conf 1799832687545788899999971078989537876885-2489999981677
No 314
>PRK08694 consensus
Probab=91.84 E-value=0.68 Score=25.24 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---C-CCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 99999999887397337998633764699999999971---9-97899931634689999999986789
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---Q-RPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~---g-r~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
..+..+..|+..| .-.++-|=+|.|||-..++++... + +++++..-|.+ ..|++.|+-+-.+.
T Consensus 206 ~~LD~~t~Gl~~G-~LiVIaaRPsmGKTalalnia~~~a~~~~~~V~~fSLEMs-~~~l~~Rlla~~s~ 272 (468)
T PRK08694 206 IDLDKKTSGLQPG-DLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAVFSMEMG-GAQLVMRMLGSVGR 272 (468)
T ss_pred HHHHHHHCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHHHHCC
T ss_conf 8898764488878-4799961786537899999999999847984799778899-99999999997259
No 315
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=91.71 E-value=0.13 Score=30.71 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=15.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHC
Q ss_conf 7998633764699999999971
Q gi|254780991|r 171 QLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 171 qlL~GVTGSGKTevya~lI~~~ 192 (805)
.+|-||.|||||-|=..|+++.
T Consensus 1 ~VlmGvaG~GKs~~a~~l~~~l 22 (175)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (175)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
T ss_conf 9676027862889999999985
No 316
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.70 E-value=1 Score=23.97 Aligned_cols=143 Identities=17% Similarity=0.155 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHHHHHHHH---HCCC--CEEEEECCH-------HHHHHHHHHHHHH
Q ss_conf 88438999999998873-973379986337646999999999---7199--789993163-------4689999999986
Q gi|254780991|r 150 SGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIE---AMQR--PAIVMAPNK-------ILAAQLYSEFKNF 216 (805)
Q Consensus 150 ~gdQ~~Ai~~L~~~l~~-g~~~qlL~GVTGSGKTevya~lI~---~~gr--~aLvLvPei-------~La~QL~~rfk~~ 216 (805)
+.....|+..-++.-.. -+.+..|+|=+|||||-.+-.+-. +.+. -++.+..|- ++-..-+..||.+
T Consensus 94 ~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~ 173 (408)
T COG0593 94 SNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEK 173 (408)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44999999999875668868957998799997899999999999862998648850489989999999885048888876
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEE
Q ss_conf 78983899862134444210155543210221035889999999999998549984998277896168983477225799
Q gi|254780991|r 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296 (805)
Q Consensus 217 Fp~n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIv 296 (805)
+ +-.+.++ ---. -.+-.+.++.+-+...++|......||+.+.. +|....++
T Consensus 174 y-~~dlllI-DDiq-----------------~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr------~P~~l~~~--- 225 (408)
T COG0593 174 Y-SLDLLLI-DDIQ-----------------FLAGKERTQEEFFHTFNALLENGKQIVLTSDR------PPKELNGL--- 225 (408)
T ss_pred H-CCCEEEE-CHHH-----------------HHCCCHHHHHHHHHHHHHHHHCCCEEEEECCC------CCHHHCCC---
T ss_conf 4-2673555-1386-----------------75677157999999999888508879997078------83221103---
Q ss_pred EECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf 94198111787532343117656338775453318724783178887788
Q gi|254780991|r 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 (805)
Q Consensus 297 dEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~ 346 (805)
...-+..|. .|.++++-||..|+.
T Consensus 226 -------------------------~~rL~SR~~-~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 226 -------------------------EDRLRSRLE-WGLVVEIEPPDDETR 249 (408)
T ss_pred -------------------------CHHHHHHHH-CEEEEEECCCCHHHH
T ss_conf -------------------------588998986-305775279888999
No 317
>PRK09183 transposase/IS protein; Provisional
Probab=91.63 E-value=0.68 Score=25.25 Aligned_cols=61 Identities=20% Similarity=0.144 Sum_probs=43.4
Q ss_pred HHHHHHHHHHH--HHCCCCEEEEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 38999999998--873973379986337646999999999---71997899931634689999999986789
Q gi|254780991|r 153 QPAAIAQLLKG--IHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 153 Q~~Ai~~L~~~--l~~g~~~qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
-...|..|..+ ++.+ ...+|.|-||.|||.+-..+-- +.|.+|++.. ++.|+.+++.-..+
T Consensus 85 ~~~~i~~La~~~fi~~~-~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~-----~~~L~~~L~~a~~~ 150 (258)
T PRK09183 85 PQKQLQSLRSLSFIERN-ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-----AADLLLQLSTAQRQ 150 (258)
T ss_pred CHHHHHHHHCCCHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-----HHHHHHHHHHHHHC
T ss_conf 38999988258166558-86799899998689999999999998799399978-----99999999999876
No 318
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=91.60 E-value=0.23 Score=28.80 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=32.9
Q ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 379986337646999999999719978999316346899999999
Q gi|254780991|r 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214 (805)
Q Consensus 170 ~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk 214 (805)
-.+++|-||||||..-+.+.+++|-|++.+= .-|.|.++.
T Consensus 3 l~~I~GpT~~GKT~~ai~lA~~~g~~iis~D-----~~Q~y~el~ 42 (232)
T pfam01745 3 LYLIWGATCTGKTAEAIALAKETGWPVIVLD-----RVQCCSQLA 42 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEC-----HHHHHHCCC
T ss_conf 6899788777716999999999599779620-----344300113
No 319
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=91.57 E-value=1 Score=23.87 Aligned_cols=111 Identities=13% Similarity=0.287 Sum_probs=59.5
Q ss_pred HHHHH-HHHHCCCCEEEEEEECCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHH-------CCCCEEEE
Q ss_conf 99999-98873973379986337646999999999----71997899931634689999999986-------78983899
Q gi|254780991|r 157 IAQLL-KGIHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKILAAQLYSEFKNF-------FPHNAVEY 224 (805)
Q Consensus 157 i~~L~-~~l~~g~~~qlL~GVTGSGKTevya~lI~----~~gr~aLvLvPei~La~QL~~rfk~~-------Fp~n~V~~ 224 (805)
+++|. -|+..| +..|+.|-.|||||-.-+|.+- +.|.++|+++=+-+- .++++-.+++ ..+..+.+
T Consensus 13 LD~iL~GGlp~g-~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~-~~l~~~~~~~g~~~~~~~~~~~l~i 90 (501)
T PRK09302 13 FDDITNGGLPKG-RPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESP-EDIIRNVASFGWDLQKLIDEGKLFI 90 (501)
T ss_pred HHHHHCCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHHCCCCHHHHHHCCCEEE
T ss_conf 577854898899-77999838999999999999999988559978999857999-9999999984998689732683899
Q ss_pred EEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC-CCCEEEECCHHHHC
Q ss_conf 86213444421015554321022103588999999999999854-99849982778961
Q gi|254780991|r 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIY 282 (805)
Q Consensus 225 f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~-~~~~IVVgsrSAIf 282 (805)
.+..-+ ++.+. + .-.-+++..--.-...+.+ +.+.|||=|.++++
T Consensus 91 ~d~~~~---~~~~~-------~---~~~~dL~~l~~~I~~~v~~~~~~RvViDSlt~l~ 136 (501)
T PRK09302 91 LDASPD---PSEQE-------E---AGEYDLSALIERIEYAIRKIKAKRVVIDSIEALF 136 (501)
T ss_pred EECCCC---CCCCC-------C---CCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHH
T ss_conf 961567---43111-------3---3447689999999999997199999999978998
No 320
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.50 E-value=0.57 Score=25.78 Aligned_cols=37 Identities=32% Similarity=0.403 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 99999998873973379986337646999999999719
Q gi|254780991|r 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193 (805)
Q Consensus 156 Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~g 193 (805)
..+-|...++.+ ...+.-|-||||||-++..++....
T Consensus 14 ~~~~L~~~v~~~-~nIlIsG~tGSGKTTll~al~~~i~ 50 (186)
T cd01130 14 QAAYLWLAVEAR-KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999999999859-9899989999989999999996133
No 321
>PRK08903 hypothetical protein; Validated
Probab=91.49 E-value=0.89 Score=24.35 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHH--CCCCEEEEEEECCCCHHHHHHHHHH---HCCCCEEEEECCH
Q ss_conf 843899999999887--3973379986337646999999999---7199789993163
Q gi|254780991|r 151 GDQPAAIAQLLKGIH--SREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNK 203 (805)
Q Consensus 151 gdQ~~Ai~~L~~~l~--~g~~~qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPei 203 (805)
|.=..|+..+.+-.. .+.....|||-+|||||-..-.+.. +.++.+.++..+.
T Consensus 23 g~n~~~~~~l~~~~~~~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~~~~~~yl~~~~ 80 (227)
T PRK08903 23 GENAELVTRLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAAASEGGKNARYLDPAS 80 (227)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 7759999999988743887866999899999888999999999980699749965110
No 322
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.45 E-value=0.51 Score=26.18 Aligned_cols=110 Identities=18% Similarity=0.273 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHHC-CCCEEEEECCHHHHHHHH---HHHHHHCCCCEEEEEE
Q ss_conf 3899999999887397--337998633764699999999971-997899931634689999---9999867898389986
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEAM-QRPAIVMAPNKILAAQLY---SEFKNFFPHNAVEYFV 226 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~~-gr~aLvLvPei~La~QL~---~rfk~~Fp~n~V~~f~ 226 (805)
|.-..+.|..+|+.|. +..|+.|.-|.|||- .|+++++. +-.- -..|.+.+..=. .-+++...++-|
T Consensus 21 Q~~v~~~l~na~~~~r~~haylf~G~rGvGKTt-~ari~Ak~lnc~~--~~~~~g~~~~pcg~C~~C~~i~~g~~~---- 93 (721)
T PRK12323 21 QEHVVRALTHALEQQRLHHAYLFTGTRGVGKTT-LSRILAKSLNCTG--PDGEGGITAQPCGQCRACTEIDAGRFV---- 93 (721)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHH-HHHHHHHHHCCCC--CCCCCCCCCCCCCCCHHHHHHHCCCCC----
T ss_conf 599999999999719975447502799888989-9999999976899--866789878878776546877568987----
Q ss_pred ECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHH-HHCCEEEEECCCCC
Q ss_conf 213444421015554321022103588999999999999854998499827789616898347-72257999419811
Q gi|254780991|r 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES-YSQMIVQLKIGDSV 303 (805)
Q Consensus 227 S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~-~lglIIvdEehd~~ 303 (805)
-+||-|++.|..+|..| .|++. +-| .|.. ..+..|+||+|.-+
T Consensus 94 ----------------d~~EiDaas~~~v~~~r-----~l~~~----------~~y---~P~~~~~KvyiiDevhmls 137 (721)
T PRK12323 94 ----------------DYIEMDAASNRGVDEMA-----QLLDQ----------AVY---APTAGRFKVYMIDEVHMLT 137 (721)
T ss_pred ----------------CEEEEECCCCCCHHHHH-----HHHHH----------CCC---CCCCCCEEEEEEECCCCCC
T ss_conf ----------------64774367678889999-----99985----------455---8876644699985400058
No 323
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.40 E-value=0.23 Score=28.73 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 38999999998873-9733799863376469999999997
Q gi|254780991|r 153 QPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~-g~~~qlL~GVTGSGKTevya~lI~~ 191 (805)
-.+-|+.+.+-|.. ...--+|.|=.|-|||-+.=.+..+
T Consensus 191 R~~Ei~r~i~iL~Rr~KNNpiLvGepGVGKTAIvEGLA~r 230 (758)
T PRK11034 191 REKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHH
T ss_conf 4899999999997632589602169998699999999999
No 324
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=91.29 E-value=0.75 Score=24.89 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEE-EECCHHHHHHHHHHH
Q ss_conf 3899999999887397337998633764699999999971997899-931634689999999
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV-MAPNKILAAQLYSEF 213 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLv-LvPei~La~QL~~rf 213 (805)
+..++..+..++..| .+.+|-|.+|.|||...-.+.+.++.+... ....-.+..++....
T Consensus 29 ~~~~~~~~l~a~~~~-~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 29 DEEVIELALLALLAG-GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred CHHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCHH
T ss_conf 699999999999859-9778779898777999999999838981899568998888820568
No 325
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.22 E-value=0.46 Score=26.48 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 3899999999887397--33799863376469999999997
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~ 191 (805)
|...++.|..+|+.|. +..|+.|.-|.|||- .|+++++
T Consensus 21 Q~~v~~~L~nal~~~rl~haylf~G~rGvGKTt-~Ari~Ak 60 (704)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTT-IARILAK 60 (704)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH-HHHHHHH
T ss_conf 699999999999819975237502789878889-9999999
No 326
>PRK06526 transposase; Provisional
Probab=91.19 E-value=1.1 Score=23.60 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=43.6
Q ss_pred HHHHHHHHHHH--HHCCCCEEEEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 38999999998--873973379986337646999999999---71997899931634689999999986789
Q gi|254780991|r 153 QPAAIAQLLKG--IHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 153 Q~~Ai~~L~~~--l~~g~~~qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
-+..|.+|..+ ++++ ...++.|-||+|||.+-..+.- +.|.+|++. -+++|+.+|..-..+
T Consensus 82 ~~~~i~~La~~~fi~~~-~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~-----~~~~L~~~L~~a~~~ 147 (254)
T PRK06526 82 KRDTIAHLGTLDFVTGK-ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA-----TAAQWVARLAAAHHA 147 (254)
T ss_pred CHHHHHHHHCCCHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE-----EHHHHHHHHHHHHHC
T ss_conf 99999998637177658-8789989999868999999999999869967998-----779999999998855
No 327
>PRK08506 replicative DNA helicase; Provisional
Probab=91.17 E-value=0.82 Score=24.60 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999988739733799863376469999999997---1997899931634689999999986789
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
..+..+..|+..| .-.+|-|=+|.|||-..++++.. .|++|++..-|.+ +.||..|+-+-...
T Consensus 181 ~~LD~~t~Gl~~g-dLiIIAARPsmGKTAfAlniA~~~a~~~~~V~~FSLEMs-~~ql~~Rlls~~s~ 246 (473)
T PRK08506 181 KQLNKMTKGFNKG-DLIIIAARPSMGKTTLVLNMVLKALNQGKGVAFFSLEMP-AEQLMLRMLSAKTS 246 (473)
T ss_pred HHHHHHHCCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHHCC
T ss_conf 8788872699856-279995079986789999999999965996589822479-99999999997288
No 328
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=91.10 E-value=0.24 Score=28.58 Aligned_cols=75 Identities=21% Similarity=0.262 Sum_probs=44.4
Q ss_pred EEECCCCCCCHHHHHHH--HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHH---HHHHHH
Q ss_conf 75188888843899999--999887397337-99863376469999999997---1997899931634689---999999
Q gi|254780991|r 143 MQTDYHPSGDQPAAIAQ--LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAA---QLYSEF 213 (805)
Q Consensus 143 l~~~~~P~gdQ~~Ai~~--L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~---QL~~rf 213 (805)
|.+.+.+.-++..-+.- .....+.+.... |+-||-|+|||=+.+.+... .|+.+|+=+=.-.=|+ || +..
T Consensus 54 l~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Vil~VGVNG~GKTTTIaKLA~~l~~~Gk~V~laAgDTFRAAA~EQL-~~W 132 (284)
T TIGR00064 54 LKEILKEILDKDTLLDLEQIEELPEEKKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQL-EVW 132 (284)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH-HHH
T ss_conf 9998741123211334433443014789779999844088601028899999987499089982752479999999-998
Q ss_pred HHHCC
Q ss_conf 98678
Q gi|254780991|r 214 KNFFP 218 (805)
Q Consensus 214 k~~Fp 218 (805)
-+|.+
T Consensus 133 a~R~g 137 (284)
T TIGR00064 133 AKRLG 137 (284)
T ss_pred HHHHC
T ss_conf 98838
No 329
>PTZ00301 uridine kinase; Provisional
Probab=91.05 E-value=1.2 Score=23.51 Aligned_cols=75 Identities=21% Similarity=0.387 Sum_probs=34.2
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCC-CHHHH--C
Q ss_conf 98633764699999999971997899931634689999999986789838998621344442101555432-10221--0
Q gi|254780991|r 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT-YIEKE--S 249 (805)
Q Consensus 173 L~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~-~i~k~--~ 249 (805)
+-|-+|||||. +|..+..+|...++.+.|.+ +|--+||.+..-+|..+. ++..| .
T Consensus 8 IaGgSgSGKTT---------------------~a~~i~~~l~~~~~~~~v~i-i~~D~Yy~d~~~~~~~~~~~~NfDhP~ 65 (210)
T PTZ00301 8 ISGASGSGKSS---------------------LSTNIVSELMAHCGPVSIGV-ICEDFYYRDQSNIPESERAYTNYDHPK 65 (210)
T ss_pred EECCCCCCHHH---------------------HHHHHHHHHHHHCCCCCEEE-EECCCCCCCCCCCCHHHCCCCCCCCCC
T ss_conf 96887678999---------------------99999999876149980799-836766778765886562788999823
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 35889999999999998549984
Q gi|254780991|r 250 SINEQIDRMRHSATRSLLERNDC 272 (805)
Q Consensus 250 s~n~~i~~~R~~a~~~l~~~~~~ 272 (805)
+++ ++.+ .+....|.+|+.+
T Consensus 66 a~D--~dLl-~~~L~~Lk~Gk~I 85 (210)
T PTZ00301 66 SLE--HDLL-TTHLRELKSGKTV 85 (210)
T ss_pred CCC--HHHH-HHHHHHHHCCCCE
T ss_conf 036--9999-9999999769963
No 330
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.00 E-value=1 Score=23.93 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=41.8
Q ss_pred HHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 99998873973379986337646999999999---719978999316346899999999867898
Q gi|254780991|r 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 (805)
Q Consensus 159 ~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk~~Fp~n 220 (805)
.|--|+..| .-.++.|-.|||||-.-++.+- +.|.++++++-|-+ +.+.+...++ |+-+
T Consensus 16 ~lggGip~g-s~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t-~~~~i~qm~s-~g~d 77 (230)
T PRK08533 16 RLGGGIPFG-SIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLT-TTEFIKQMMS-LGYD 77 (230)
T ss_pred HHCCCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC-HHHHHHHHHH-CCCC
T ss_conf 717898898-489998689987899999999999878986999994389-9999999998-6998
No 331
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=90.97 E-value=1.2 Score=23.46 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=77.3
Q ss_pred HHHCCCCEEEEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 8873973379986337646999999999---7199789993163468999999998678983899862134444210155
Q gi|254780991|r 163 GIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239 (805)
Q Consensus 163 ~l~~g~~~qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p 239 (805)
|++.| =-.=+||=-|||||-+-+.+.- +.||.|+++=-|=+|-+ +||++.+.+++.
T Consensus 8 GvE~G-~iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEGGLS~---ER~~q~~~~~~~----------------- 66 (223)
T TIGR02237 8 GVERG-IITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEGGLSP---ERFKQIAEDRAL----------------- 66 (223)
T ss_pred CCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH---HHHHHHHHCCCC-----------------
T ss_conf 51203-588987589986789999999999861895899962898328---999998630588-----------------
Q ss_pred CCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf 54321022103588999999999999854998499827789616898347722579994198111787532343117656
Q gi|254780991|r 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 (805)
Q Consensus 240 ~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~~~~~~l~~~~Y~R 319 (805)
.|+.-+..+|+.|.++ +..|....+-..
T Consensus 67 ----------------------------------------------D~e~~~~~~iv~~~~~------f~eQ~~ai~~~~ 94 (223)
T TIGR02237 67 ----------------------------------------------DPERVLSNVIVFEVFD------FDEQEVAIQKTS 94 (223)
T ss_pred ----------------------------------------------CHHHHHCCEEEECCCC------HHHHHHHHHHHH
T ss_conf ----------------------------------------------9888841535523535------678999999999
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCC
Q ss_conf 3387754533187247831788877888731044420
Q gi|254780991|r 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 (805)
Q Consensus 320 ~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~de 356 (805)
+++-..| -+.--+||||+|. .+|.+.-+|.
T Consensus 95 -~~~~~~G-~~~~LvVvDs~t~-----~YRle~~~d~ 124 (223)
T TIGR02237 95 -KLIDRDG-DKADLVVVDSFTA-----LYRLERSDDR 124 (223)
T ss_pred -HHHHCCC-CEEEEEEEECCHH-----HHHHCCCCCC
T ss_conf -9986068-8331488815334-----5420257860
No 332
>PRK08760 replicative DNA helicase; Provisional
Probab=90.87 E-value=1 Score=23.85 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999988739733799863376469999999997----1997899931634689999999986789
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
..+..+..|+..| .-.+|-|=+|.|||-..++++.. .++++++..-|.+ ..|+..|+-+--..
T Consensus 217 ~~LD~~t~Gl~~G-~LiViaaRPsmGKTalalnia~~~A~~~~~~V~~fSLEMs-~~ql~~Rlls~~s~ 283 (476)
T PRK08760 217 NDFDAMTAGLQPT-DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS-ASQLAMRLISSNGR 283 (476)
T ss_pred HHHHHHHCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHHCC
T ss_conf 8899744699877-7799987788747899999999999837997899703699-99999999998338
No 333
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=90.82 E-value=0.59 Score=25.66 Aligned_cols=110 Identities=16% Similarity=0.251 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 3899999999887397--33799863376469999999997-19978999316346899999999867898389986213
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~-~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~ 229 (805)
|....+.|...|.+|. +..|+.|.-|+|||-+ +.++++ ++-.- -|+..- --....++....++
T Consensus 20 Qe~v~~~L~~Ai~~gri~HAYLFsGprG~GKTt~-ARilAkaLNC~~---~~~~~P-Cg~C~sC~~i~~g~--------- 85 (775)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSS-ARILARSLNCAQ---GPTSTP-CGVCDSCVALAPGG--------- 85 (775)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHH-HHHHHHHHCCCC---CCCCCC-CCCCHHHHHHHCCC---------
T ss_conf 5999999999998199763376237888788899-999999966899---999898-88876378886389---------
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHH-HHCCEEEEECCCCC
Q ss_conf 444421015554321022103588999999999999854998499827789616898347-72257999419811
Q gi|254780991|r 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES-YSQMIVQLKIGDSV 303 (805)
Q Consensus 230 ~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~-~lglIIvdEehd~~ 303 (805)
+.+--+||-|+..|.-+|..| .|.+ .+-| .|.. ..+..|+||.|.-+
T Consensus 86 ---------~~~~DviEiDAAS~~gVddiR-----eL~e----------~~~y---~P~~~ryKVyIIDEaHmls 133 (775)
T PRK07764 86 ---------PGSLDVVEIDAASHGGVDDAR-----ELRE----------RAFF---APAQSRYRIFIIDEAHMVT 133 (775)
T ss_pred ---------CCCCCEEEECCCCCCCHHHHH-----HHHH----------HCCC---CCCCCCEEEEEEECHHHHC
T ss_conf ---------888866873156556889999-----9998----------5476---8767863599985354407
No 334
>PRK05595 replicative DNA helicase; Provisional
Probab=90.77 E-value=1.2 Score=23.42 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999988739733799863376469999999997----1997899931634689999999986789
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
..+.++..|+..| .-.++-|=+|.|||-..++++.. .|++|++..-|.+ ..|+..|+-+....
T Consensus 189 ~~LD~~t~Gl~~G-dLiiiaaRP~mGKTa~alnia~~~a~~~g~~V~~fSlEMs-~~ql~~R~ls~~s~ 255 (444)
T PRK05595 189 RELDAKTSGFQKG-DMILIAARPSMGKTTFALNIAEYAALREGKSVVIFSLEMS-KEQLAYKLLCSEAN 255 (444)
T ss_pred HHHHHHHCCCCCC-CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHHCC
T ss_conf 7699874599857-7799985798980799999999999866993799958899-99999999996469
No 335
>PRK07004 replicative DNA helicase; Provisional
Probab=90.73 E-value=0.99 Score=24.00 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 999999998873973379986337646999999999----71997899931634689999999986789
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~----~~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
..++.+..|+..| .-.+|-|=+|.|||-..++++. +.|+|+++..-|.+ +.||+.|+-+--..
T Consensus 201 ~~LD~~t~Gl~~g-dLiIIAARPsmGKTafAlniA~n~A~~~g~~V~~FSLEMs-~eql~~Rlls~~s~ 267 (460)
T PRK07004 201 VDLDRMTSGMHGG-ELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMP-GTQLAMRMLGSVGR 267 (460)
T ss_pred HHHHHHHCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHHHCCC
T ss_conf 8898652389877-5799973687642699999999998725886699847799-99999999986069
No 336
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=90.68 E-value=0.6 Score=25.63 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHCCC-CE-EEEEEECCCCHHHHHHHHHHHC-CCCEEE-EECCHHHHHHHHHHH-HHHCCCCEEEEEEE
Q ss_conf 3899999999887397-33-7998633764699999999971-997899-931634689999999-98678983899862
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE-KV-QLLLGVTGSGKTFTMAKVIEAM-QRPAIV-MAPNKILAAQLYSEF-KNFFPHNAVEYFVS 227 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~-~~-qlL~GVTGSGKTevya~lI~~~-gr~aLv-LvPei~La~QL~~rf-k~~Fp~n~V~~f~S 227 (805)
|.-..+.|..+|+.|. ++ .|+.|.-|.||| +.++++++. +-..-+ -.|=-. -....++ ..+|.|
T Consensus 21 q~~~~~~l~~~~~~~~~~~a~lf~g~rg~gkt-~~ar~~a~~lnc~~~~~~~pc~~--c~~c~~i~~~~~~d-------- 89 (663)
T PRK08770 21 QEHVVRALSNALDSGRVHHAFLFTGTRGVGKT-TIARIFAKSLNCETGTSADPCGQ--CPACLDIDAGRYID-------- 89 (663)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH-HHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHCCCCCC--------
T ss_conf 59999999999970997404762279988888-99999999867899999997877--87789885489886--------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHH-HHCCEEEEECCCCC
Q ss_conf 13444421015554321022103588999999999999854998499827789616898347-72257999419811
Q gi|254780991|r 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES-YSQMIVQLKIGDSV 303 (805)
Q Consensus 228 ~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~-~lglIIvdEehd~~ 303 (805)
+||-|++.|-.+|-.| .|++. +-| +|.. .-+.-|+||+|.-+
T Consensus 90 ----------------~~e~daas~~~v~~~r-----~~~~~----------~~~---~p~~~~~kvy~idevhmls 132 (663)
T PRK08770 90 ----------------LLEIDAASNTGVDDVR-----EVIEN----------AQY---MPSRGKFKVYLIDEVHMLS 132 (663)
T ss_pred ----------------EEEEECCCCCCHHHHH-----HHHHH----------CCC---CCCCCCEEEEEEECHHHCC
T ss_conf ----------------5886467658889999-----99984----------435---8877743699970043328
No 337
>PRK04195 replication factor C large subunit; Provisional
Probab=90.66 E-value=1.1 Score=23.59 Aligned_cols=43 Identities=28% Similarity=0.241 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHH---CCC---CEEEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 3899999999887---397---337998633764699999999971997
Q gi|254780991|r 153 QPAAIAQLLKGIH---SRE---KVQLLLGVTGSGKTFTMAKVIEAMQRP 195 (805)
Q Consensus 153 Q~~Ai~~L~~~l~---~g~---~~qlL~GVTGSGKTevya~lI~~~gr~ 195 (805)
|..+++.|..=++ +|. +..||+|-.|+|||-+.--+..+.|-.
T Consensus 19 ~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~~ 67 (403)
T PRK04195 19 NEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDYGWE 67 (403)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 8999999999999987399657469988939987999999999984998
No 338
>PRK06749 replicative DNA helicase; Provisional
Probab=90.59 E-value=1.1 Score=23.75 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 9999999988739733799863376469999999997---199789993163468999999998678
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFP 218 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp 218 (805)
..++++..|+..| .-.++-|=+|.|||-..++++.. .|+++++..-|.+ ..|+..|+-+--.
T Consensus 174 ~~LD~lt~Gl~~g-~LiviaaRPsmGKTa~alnia~~~a~~g~~v~~fSlEMs-~~~l~~R~ls~~s 238 (428)
T PRK06749 174 TSLNKMTCGLQEG-DFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMS-SKQLLKRMASCVG 238 (428)
T ss_pred HHHHHHHCCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHHC
T ss_conf 8898752499988-689996279897689999999999964992799837899-9999999999754
No 339
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=90.41 E-value=0.72 Score=25.04 Aligned_cols=47 Identities=30% Similarity=0.434 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHCCCCEE-EEEEECCC-CHHH---HHHHHHHHCCCCEEE
Q ss_conf 43899999999887397337-99863376-4699---999999971997899
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQ-LLLGVTGS-GKTF---TMAKVIEAMQRPAIV 198 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~q-lL~GVTGS-GKTe---vya~lI~~~gr~aLv 198 (805)
|-.+|+..|...+-...... -+.||||| |||= ..+++.+..|+++-+
T Consensus 80 d~~~al~~la~~~y~~~~~~l~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~ 131 (481)
T PRK00139 80 DLRRALALLAAAFYGNPSDKLKLIGVTGTNGKTTTAYLIAQILRLLGKKAAL 131 (481)
T ss_pred CHHHHHHHHHHHHHCCCHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 9999999999998708043180899958998434999999999874986314
No 340
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.40 E-value=1 Score=23.84 Aligned_cols=31 Identities=35% Similarity=0.529 Sum_probs=22.9
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHC----CCCEEEE
Q ss_conf 337998633764699999999971----9978999
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAM----QRPAIVM 199 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~----gr~aLvL 199 (805)
+...|-|=||.|||=+.|.+.++. |+.+-++
T Consensus 224 kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLI 258 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLY 258 (432)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 29999899998889999999999999749927999
No 341
>KOG0244 consensus
Probab=90.24 E-value=0.38 Score=27.11 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=42.2
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHH----HHHHHHHCCCCEE-EEEEECCCCHHHHHHHH
Q ss_conf 87421588775477518888884389999----9999887397337-99863376469999999
Q gi|254780991|r 130 SINNHSKDITFFQMQTDYHPSGDQPAAIA----QLLKGIHSREKVQ-LLLGVTGSGKTFTMAKV 188 (805)
Q Consensus 130 ~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~----~L~~~l~~g~~~q-lL~GVTGSGKTevya~l 188 (805)
.|.-..++-+-|.-.--|.+..+|..+.+ .|++++-.|+... +-+|-||||||.+|-..
T Consensus 23 ~pqv~ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~ 86 (913)
T KOG0244 23 TPQVAIGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTN 86 (913)
T ss_pred CCCEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEECCCC
T ss_conf 9843535775345322115734789999999999999986300011343235678731434566
No 342
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.19 E-value=1.4 Score=22.98 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=47.7
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
Q ss_conf 99999887397337998633764699999999971997899931634689999999986789838998621344442101
Q gi|254780991|r 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237 (805)
Q Consensus 158 ~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay 237 (805)
.-|...++.+ +..+.-|-||||||-.+-.++......-=|++=|=+.--+| ...| |.|.++-+.-.
T Consensus 151 ~fL~~aV~~r-~NilI~G~TgSGKTTll~aL~~~ip~~eRiitIEDt~EL~l-----~~~p-n~v~l~~~~~~------- 216 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVL-----SSHP-NRVHLLASKGG------- 216 (332)
T ss_pred HHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHCC-----CCCC-CEEEEEECCCC-------
T ss_conf 9999998648-71999888898899999999835895353566314066356-----6688-88999971688-------
Q ss_pred CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHH
Q ss_conf 555432102210358899999999999985499849982778
Q gi|254780991|r 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 (805)
Q Consensus 238 ~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrS 279 (805)
+....++- +--.-.+|+-+.|.||||=+.
T Consensus 217 --------~g~~~vt~-----~~Ll~~aLR~rPDRIivGEvR 245 (332)
T PRK13900 217 --------QGRAKVTT-----QDLIEACLRLRPDRIIVGELR 245 (332)
T ss_pred --------CCCCEECH-----HHHHHHHHCCCCCEEEECCCC
T ss_conf --------88660869-----999999756899758445557
No 343
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.18 E-value=1.1 Score=23.54 Aligned_cols=94 Identities=19% Similarity=0.351 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 3899999999887397337998633764699999999971--99789993163468999999998678983899862134
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~--gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~ 230 (805)
=|+-++.|.- ....-.+..|.|||||.-+||..|.-. +.+--|++=|- .+||-|-|
T Consensus 115 LPevlk~la~---~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIED-----------------PIEfih~h-- 172 (375)
T COG5008 115 LPEVLKDLAL---AKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIED-----------------PIEFIHKH-- 172 (375)
T ss_pred CCHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCEEEECC-----------------HHHHHHCC--
T ss_conf 8488997520---4374599987788884016899860134688773588238-----------------19987415--
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHH
Q ss_conf 4442101555432102210358899999999999985499849982778
Q gi|254780991|r 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 (805)
Q Consensus 231 ~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrS 279 (805)
....+...+ +.-+++.|-...-+.|....|+|+||-+-
T Consensus 173 ---------~~CIvTQRE--vGvDTesw~~AlkNtlRQaPDvI~IGEvR 210 (375)
T COG5008 173 ---------KRCIVTQRE--VGVDTESWEVALKNTLRQAPDVILIGEVR 210 (375)
T ss_pred ---------CCEEEEEEE--ECCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf ---------641587334--14461889999998775189869997304
No 344
>PRK08181 transposase; Validated
Probab=90.14 E-value=1.4 Score=22.95 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHH---HHCCCCEEEEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 88888438999999998---873973379986337646999999999---71997899931634689999999986789
Q gi|254780991|r 147 YHPSGDQPAAIAQLLKG---IHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 147 ~~P~gdQ~~Ai~~L~~~---l~~g~~~qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
+.|.= ....|..|..+ ++++ ...+|.|-||+|||.+-..+-- +.|.+|++.. ++.|+.+|..--.+
T Consensus 84 ~~p~i-~~~~i~~L~~~~~fi~~~-~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~-----~~~L~~~L~~a~~~ 155 (269)
T PRK08181 84 AVPMI-SKAQVMALAAGDSWLAKG-ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----TTDLVQKLQVARRE 155 (269)
T ss_pred CCCCC-CHHHHHHHHCCCHHHHCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-----HHHHHHHHHHHHHC
T ss_conf 68998-999999996567588648-70899899998788999999999998799399978-----99999999997755
No 345
>PRK06696 uridine kinase; Validated
Probab=90.05 E-value=1.1 Score=23.79 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHC---CCCE-EEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHH
Q ss_conf 88438999999998873---9733-799863376469999999997---19978999316346899
Q gi|254780991|r 150 SGDQPAAIAQLLKGIHS---REKV-QLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQ 208 (805)
Q Consensus 150 ~gdQ~~Ai~~L~~~l~~---g~~~-qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~Q 208 (805)
+.--.+-|++|++-|.. +... .=+-|.+|||||.+-.++.+. .|++++++-=.=.+.++
T Consensus 4 ~~~r~~~~~~~~~~i~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~~~~ 69 (227)
T PRK06696 4 SMNRKQVVKEIANHILTLNLTRPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFHNPK 69 (227)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf 962878999999999835999868999778998787999999999997469948997154434737
No 346
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.01 E-value=1.4 Score=22.88 Aligned_cols=97 Identities=24% Similarity=0.268 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 38999999998873973379986337646999999999719978999316346899999999867898389986213444
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~y 232 (805)
-+.+++.|...++.+ +.-+.-|-||||||-.+..+..-.....-+++=|-+- +++- ..+|-|.++.+-....
T Consensus 129 ~~~~~ayL~~~ie~~-~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~------E~~~-~~~n~~~l~~r~~~~~ 200 (312)
T COG0630 129 SPEQAAYLWLAIEAR-KSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTP------ELKL-PHENWVQLVTREGESG 200 (312)
T ss_pred CHHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCC------EECC-CCCCEEEEEECCCCCC
T ss_conf 888999999999769-9499988888864959999986378522189952555------4147-8876589983257776
Q ss_pred CCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH-HHHCCCCEEEECCH
Q ss_conf 42101555432102210358899999999999-98549984998277
Q gi|254780991|r 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATR-SLLERNDCIVVSSV 278 (805)
Q Consensus 233 qpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~-~l~~~~~~IVVgsr 278 (805)
.+.++ ..+..+ ++..+.|-||||-.
T Consensus 201 ---------------~~~v~------~~dll~aalR~rPd~IivgEv 226 (312)
T COG0630 201 ---------------SSEVS------LEDLLRAALRQRPDYIIVGEL 226 (312)
T ss_pred ---------------CCCCC------HHHHHHHHHCCCCCEEEEEEE
T ss_conf ---------------56666------999999986239986999633
No 347
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=89.88 E-value=1.4 Score=22.80 Aligned_cols=141 Identities=21% Similarity=0.165 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHCC-----CCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 389999999988739-----733799863376469999999997199789993163468999999998678983899862
Q gi|254780991|r 153 QPAAIAQLLKGIHSR-----EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g-----~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S 227 (805)
=.+++..+...+... .+...|.|=||-|||=+.|.+.++.. -.-+...|.+-
T Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~---------------------~~~~~~kVaiI-- 239 (407)
T COG1419 183 FSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV---------------------MLKKKKKVAII-- 239 (407)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH---------------------HHCCCCCEEEE--
T ss_conf 7999999887644111124685799989988758879999999997---------------------53257606899--
Q ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHHH
Q ss_conf 13444421015554321022103588999999999999854998499827789616898347722579994198111787
Q gi|254780991|r 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307 (805)
Q Consensus 228 ~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~~ 307 (805)
.+|+| ... ..+-+.....++.=.-.+|..+..-.. ...++.+-.+|+||-.|-+..-..
T Consensus 240 ------------TtDtY---RIG-----A~EQLk~Ya~im~vp~~vv~~~~el~~-ai~~l~~~d~ILVDTaGrs~~D~~ 298 (407)
T COG1419 240 ------------TTDTY---RIG-----AVEQLKTYADIMGVPLEVVYSPKELAE-AIEALRDCDVILVDTAGRSQYDKE 298 (407)
T ss_pred ------------EECCC---HHH-----HHHHHHHHHHHHCCCEEEECCHHHHHH-HHHHHHCCCEEEEECCCCCCCCHH
T ss_conf ------------71441---152-----899999999986995599639999999-999853188899968998833789
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf 532343117656338775453318724783178887788
Q gi|254780991|r 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 (805)
Q Consensus 308 ~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~ 346 (805)
+..++ .++....+..-..++=|+|...++.
T Consensus 299 ~i~el---------~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 299 KIEEL---------KELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred HHHHH---------HHHHHCCCCCEEEEEEECCCCHHHH
T ss_conf 99999---------9997035662179998457646889
No 348
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.79 E-value=0.65 Score=25.35 Aligned_cols=38 Identities=26% Similarity=0.493 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 3899999999887397--33799863376469999999997
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~ 191 (805)
|.-..+.|..+|..|. +..|+.|.-|.||| +.|+++++
T Consensus 21 q~~v~~~l~~a~~~~r~~haylf~g~rg~gkt-t~ari~ak 60 (696)
T PRK06872 21 QEHILTALSNGLKENRLHHAYLFSGTRGVGKT-SIARLFAK 60 (696)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHH-HHHHHHHH
T ss_conf 59999999999971986304751178988888-99999999
No 349
>PRK05642 DNA replication initiation factor; Validated
Probab=89.70 E-value=1.5 Score=22.71 Aligned_cols=109 Identities=14% Similarity=0.227 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHH--CC--CCEEEEEEECCCCHHHHHHHH---HHHCCCCEEEEECCHH--HHHHHHHHHHHHCCCCE
Q ss_conf 843899999999887--39--733799863376469999999---9971997899931634--68999999998678983
Q gi|254780991|r 151 GDQPAAIAQLLKGIH--SR--EKVQLLLGVTGSGKTFTMAKV---IEAMQRPAIVMAPNKI--LAAQLYSEFKNFFPHNA 221 (805)
Q Consensus 151 gdQ~~Ai~~L~~~l~--~g--~~~qlL~GVTGSGKTevya~l---I~~~gr~aLvLvPei~--La~QL~~rfk~~Fp~n~ 221 (805)
|.-..|+..+..-++ .| .+...|+|-+|||||-..-.+ +++.+++++++.-+-. ..+.+.+.++.+ +.
T Consensus 24 g~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~l~~~---d~ 100 (234)
T PRK05642 24 GANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQY---EL 100 (234)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHC---CE
T ss_conf 875999999999876067877883899889999889999999999980799679978999875449998624227---98
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHH
Q ss_conf 899862134444210155543210221035889999999999998549984998277896
Q gi|254780991|r 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281 (805)
Q Consensus 222 V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAI 281 (805)
|.+ |-. +. .+-+.+++.+=+..++++.+....+|+++..+.
T Consensus 101 l~I-----DDi-------------~~-i~g~~~~e~~lF~l~N~~~~~~~~llits~~~P 141 (234)
T PRK05642 101 VCI-----DDL-------------DV-IAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred EEE-----ECH-------------HH-HCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 989-----364-------------55-468859999999999999983995999578795
No 350
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=89.61 E-value=0.94 Score=24.19 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHH--HHCCCCCCC
Q ss_conf 00124444777753321120145101133--311446555
Q gi|254780991|r 419 AQRLEQRITYDLEMLETTGSCQSIENYSR--YLTGRNPGE 456 (805)
Q Consensus 419 a~rL~qR~~~dle~l~e~G~~~gienyS~--~L~~r~~ge 456 (805)
...+.++....--.++..|+...+|.... -+.+.-||+
T Consensus 355 ~~~l~~~~~~v~~~l~~~Gf~~~~E~~n~~~Af~aqLPGn 394 (818)
T PRK13830 355 RERLQEKAEAIRRLIQAEGFGARIETLNATDAFLGSLPGN 394 (818)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCC
T ss_conf 9999999999999997389468980202199999859887
No 351
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=89.61 E-value=0.99 Score=24.00 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 01244447777533211201451011
Q gi|254780991|r 420 QRLEQRITYDLEMLETTGSCQSIENY 445 (805)
Q Consensus 420 ~rL~qR~~~dle~l~e~G~~~gieny 445 (805)
..+.++.....-.++..|+...+|..
T Consensus 387 ~~l~~~~~~v~~~l~~~GF~~~~Et~ 412 (852)
T PRK13891 387 ERLEASALLVEKAINRLAFAARIETI 412 (852)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEHH
T ss_conf 99999999999999868967986110
No 352
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=89.59 E-value=1.5 Score=22.65 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=34.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 7998633764699999999971---99789993163468999999998
Q gi|254780991|r 171 QLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKN 215 (805)
Q Consensus 171 qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rfk~ 215 (805)
.++.|=+|||||-..++++... +..++++.-|... .|+..++..
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~-~q~~~~~~~ 48 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI-EELTERLIG 48 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCH-HHHHHHHHH
T ss_conf 89998999989999999999987639979999866644-899999998
No 353
>PRK10416 cell division protein FtsY; Provisional
Probab=89.49 E-value=1.5 Score=22.60 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=10.8
Q ss_pred HHHHHHCCCCCCEEEEEECCCCH
Q ss_conf 66543127998669998248988
Q gi|254780991|r 673 QTIGRAARNVNSKVILYADTITK 695 (805)
Q Consensus 673 q~~GRagR~~~G~~il~ad~~t~ 695 (805)
.++.+.--+.+-.++|-.|..++
T Consensus 404 rvi~k~~~~aP~e~lLVlDa~tG 426 (499)
T PRK10416 404 RVMKKLDVEAPHEVMLTIDASTG 426 (499)
T ss_pred HHHHHCCCCCCCEEEEEEECCCC
T ss_conf 99972378999748999778767
No 354
>PRK06321 replicative DNA helicase; Provisional
Probab=89.47 E-value=1.4 Score=22.77 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 899999999887397337998633764699999999971----99789993163468999999998678
Q gi|254780991|r 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM----QRPAIVMAPNKILAAQLYSEFKNFFP 218 (805)
Q Consensus 154 ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~----gr~aLvLvPei~La~QL~~rfk~~Fp 218 (805)
=..+.++..|+..| .-.+|-|=+|.|||-..++++..+ ++++++..-|.+ ..||+.|+-+--.
T Consensus 213 f~~LD~lt~Gl~~G-dliviaaRPsmGKTalalnia~~~a~~~~~~v~~fSLEMs-~~ql~~R~ls~~s 279 (472)
T PRK06321 213 FIDLDKMINGFSPS-NLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMT-VDQLIHRIICSRS 279 (472)
T ss_pred HHHHHHHHCCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHHHHC
T ss_conf 48899985598867-5799853899977999999999999856994699757799-9999999987403
No 355
>TIGR02785 addA_Gpos recombination helicase AddA; InterPro: IPR014152 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the Firmicutes and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=89.35 E-value=0.34 Score=27.45 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=21.8
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHH-HHHHHHHHHHHH
Q ss_conf 998633764699999999971997899931634-689999999986
Q gi|254780991|r 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI-LAAQLYSEFKNF 216 (805)
Q Consensus 172 lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~-La~QL~~rfk~~ 216 (805)
+.-.-||+=+-..| |-..||+|-.. -++|+.+.|+..
T Consensus 588 vYD~~~g~~R~~~Y--------~DIviL~rs~~k~n~~I~~~f~~~ 625 (1295)
T TIGR02785 588 VYDKKTGEYRPVKY--------RDIVILTRSRGKWNLQIMEEFKKY 625 (1295)
T ss_pred CHHHHCCCCCCEEE--------EEEEEECCCCCCCHHHHHHHHHHC
T ss_conf 00321386266025--------567886789864337999999848
No 356
>KOG2543 consensus
Probab=89.26 E-value=0.59 Score=25.70 Aligned_cols=49 Identities=14% Similarity=0.248 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHCC---CCE-EEEEEECCCCHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 89999999988739---733-79986337646999999999719978999316
Q gi|254780991|r 154 PAAIAQLLKGIHSR---EKV-QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202 (805)
Q Consensus 154 ~~Ai~~L~~~l~~g---~~~-qlL~GVTGSGKTevya~lI~~~gr~aLvLvPe 202 (805)
..+|..|..-+-+. ... ..|+|.+|||||++.-++....+.+...+-+=
T Consensus 12 e~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ 64 (438)
T KOG2543 12 ESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCV 64 (438)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEHH
T ss_conf 89999999984789866651579961478745599999986037863054157
No 357
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=89.08 E-value=0.61 Score=25.60 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=21.3
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 337998633764699999999971997
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAMQRP 195 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~gr~ 195 (805)
+..++.||.|||||-|=..+.+++|-+
T Consensus 4 ~a~VVmGVsGsGKSTvg~~LA~~L~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 579998289899899999999995987
No 358
>PRK05636 replicative DNA helicase; Provisional
Probab=89.07 E-value=1.6 Score=22.39 Aligned_cols=63 Identities=8% Similarity=0.218 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999988739733799863376469999999997----1997899931634689999999986789
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
..+..+..|+..| .-.+|-|=+|.|||-..++++.. .|+++++..-|.+ +.||..|+-+-...
T Consensus 255 ~~LD~~t~Gl~~G-~LiIiAARPsmGKTalAlnia~n~A~~~g~~v~~fSLEMs-~~ql~~Rlla~~s~ 321 (507)
T PRK05636 255 KDLDDLTNGLRGG-QMIIVAARPGVGKSTIALDFMRSASIKNNKASVIFSLEMS-KSEIVMRLLSAEAE 321 (507)
T ss_pred HHHHHHHCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHHCC
T ss_conf 8899755088835-6799973787866899999999999876993799715699-89999999998479
No 359
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB; InterPro: IPR013363 Proteins in this entry are the DotB component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This family is most closely related to the TraJ proteins of plasmid transfer (IPR013364 from INTERPRO), rather than to proteins of other type IV secretion systems..
Probab=89.01 E-value=0.79 Score=24.73 Aligned_cols=91 Identities=26% Similarity=0.416 Sum_probs=51.6
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC------CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 99999887397337998633764699999999971------997899931634689999999986789838998621344
Q gi|254780991|r 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM------QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 (805)
Q Consensus 158 ~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~------gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~ 231 (805)
+.+++.+.-.+....+.|.|||||.-..+.+|+++ .|.+|- -|-- ..-.|+++...- ++ ||
T Consensus 124 ~~i~~aiaPqeG~v~~tGatGsGkstlla~iirel~e~~ds~rk~lt--ye~P-ie~vyd~~~t~~---a~---v~---- 190 (358)
T TIGR02524 124 DAIVEAIAPQEGVVYVTGATGSGKSTLLAAIIRELIEASDSNRKVLT--YEAP-IEYVYDELETIS---AV---VS---- 190 (358)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEE--ECCC-HHHHHHCCCCCE---EE---EE----
T ss_conf 79998517888669986267763688999999998606765641464--2263-233221101001---12---22----
Q ss_pred CCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 4421015554321022103588999999999999854998499827
Q gi|254780991|r 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277 (805)
Q Consensus 232 yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgs 277 (805)
| +-+...+...--..-++|.+....|+||-
T Consensus 191 -q---------------seiPrhl~~fa~GvrnalrrkP~~i~vGe 220 (358)
T TIGR02524 191 -Q---------------SEIPRHLNSFADGVRNALRRKPRLILVGE 220 (358)
T ss_pred -H---------------HHCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf -0---------------00212256788888887522885689833
No 360
>KOG1808 consensus
Probab=89.00 E-value=0.94 Score=24.19 Aligned_cols=67 Identities=22% Similarity=0.197 Sum_probs=51.6
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH
Q ss_conf 18888884389999999988739733799863376469999999997199-78999316346899999
Q gi|254780991|r 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR-PAIVMAPNKILAAQLYS 211 (805)
Q Consensus 145 ~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr-~aLvLvPei~La~QL~~ 211 (805)
+.|-+|--+++-+..+...+..|..+.+|.|-||||||-+...+..++|+ .+=|.-|+-+=+.-.++
T Consensus 417 ~~~i~T~~vq~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig 484 (1856)
T KOG1808 417 THYIITPRVQKNLADLARAISSGKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIG 484 (1856)
T ss_pred CEEECCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEHHCCCCCHHHHHHH
T ss_conf 41204689998899999999658998677547676811599999998546734200246333999986
No 361
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=88.93 E-value=0.49 Score=26.27 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=17.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 79986337646999999999719
Q gi|254780991|r 171 QLLLGVTGSGKTFTMAKVIEAMQ 193 (805)
Q Consensus 171 qlL~GVTGSGKTevya~lI~~~g 193 (805)
.++.||.|||||-+-..+.++.|
T Consensus 2 iiv~GvsGsGKSTia~~La~~lg 24 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89991899999999999999719
No 362
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=88.86 E-value=1.7 Score=22.29 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=11.7
Q ss_pred EEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 37998633764699999999971
Q gi|254780991|r 170 VQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 170 ~qlL~GVTGSGKTevya~lI~~~ 192 (805)
+.++.|-||||||-.+.=++++.
T Consensus 438 hT~I~G~tGaGKTvLl~~lla~~ 460 (796)
T COG3451 438 HTLIIGPTGAGKTVLLSFLLAQA 460 (796)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 74998898887899999999999
No 363
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=88.49 E-value=1.8 Score=22.12 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=29.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCC-CHHHH
Q ss_conf 5477518888884389999999988739733799863376-46999
Q gi|254780991|r 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGS-GKTFT 184 (805)
Q Consensus 140 ~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGS-GKTev 184 (805)
+|-++. |--+|+.+|.....+.+. .-+-||||| |||-|
T Consensus 86 ~~i~V~------Dtl~ALq~LA~~~R~~~~-~~VIgITGSnGKTtt 124 (824)
T PRK11930 86 NFLIVK------NPLKALQKLAAYYRKQFD-IPIIGITGSNGKTIV 124 (824)
T ss_pred CEEEEC------CHHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHH
T ss_conf 789989------899999999999997489-989999499978999
No 364
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=88.46 E-value=1.8 Score=22.10 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=36.1
Q ss_pred HCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 7397337998633764699999999971997899931634689999999986789
Q gi|254780991|r 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 165 ~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
-.| +..++.|--|+|||.++.+++.........+.==|..-+.-+.+|...|-+
T Consensus 13 g~G-Qr~~I~g~~g~GKt~l~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~~~~ 66 (213)
T pfam00006 13 GKG-QRIGIFGGSGTGKTVLLGMIARNAKADVVEVYVLIGERGREVAEFIEELLG 66 (213)
T ss_pred CCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 578-887787899998899999999856618935998137777999999997521
No 365
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=88.45 E-value=0.67 Score=25.29 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=27.9
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 7337998633764699999999971997899931634689999999
Q gi|254780991|r 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 168 ~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
.+-.++.|-||||||.+-+++.++.+-..+- +=+-|+|..+
T Consensus 4 ~~ii~i~GpTasGKs~la~~la~~~~~eIIs-----aDS~QvYk~l 44 (304)
T PRK00091 4 PKLIVLVGPTASGKTALAIELAKRLNGEIIS-----VDSMQVYRGM 44 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEE-----ECHHHHHCCC
T ss_conf 9779998988658999999999987998994-----1268874999
No 366
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.40 E-value=0.64 Score=25.41 Aligned_cols=39 Identities=36% Similarity=0.468 Sum_probs=30.3
Q ss_pred CEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHH
Q ss_conf 33799863376469999999997---1997899931634689
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAA 207 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~ 207 (805)
...|+.||-|+|||=+.+.+... .|+++++-+-.-.-|+
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAa 181 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAA 181 (340)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 799999348886371799999999978986999823347899
No 367
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype; InterPro: IPR013444 This entry represents a CRISPR-associated putative DEAH-box helicase, or Cas3, subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. The proteins include both DEAH and HD motifs..
Probab=88.30 E-value=0.17 Score=29.72 Aligned_cols=97 Identities=25% Similarity=0.231 Sum_probs=56.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH------HHHHHHH-----------CCCCCEEEEHHHHHC
Q ss_conf 32124662147899999999863596687325764578999------9999973-----------189869998458753
Q gi|254780991|r 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI------EIIRDLR-----------LGKFDVLVGINLLRE 644 (805)
Q Consensus 582 ~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~------~il~~~~-----------~g~~diLvgt~~~ak 644 (805)
|.-++||+.|-+.+..+...|++..-....+-+.++..++. +|+.+|- +-..=+||+|+-+.=
T Consensus 311 g~~~~Vf~~~~~~v~~v~a~L~k~~~~~~~ltG~vr~~~~d~lar~~~~~~~~Lpp~~~~s~g~~~~g~~~vVaTst~EV 390 (975)
T TIGR02621 311 GEAILVFCNTVDEVKKVVAKLPKEARRLEDLTGTVRGLERDMLARRGEIFNRFLPPYRSGSEGRPQQGTVYVVATSTGEV 390 (975)
T ss_pred CCEEEEEECCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEE
T ss_conf 86699987684306898864577454077628810433478520013145314876456773668998779997324255
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CC--CCEE
Q ss_conf 578777117999628856744460137766543127-99--8669
Q gi|254780991|r 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NV--NSKV 686 (805)
Q Consensus 645 GlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~--~G~~ 686 (805)
|-||.-=-||.-.. ..+||+||.||--| |. +|.+
T Consensus 391 GadldfdhLvt~~~--------~~~sl~QRfGRvnR~G~r~~~~~ 427 (975)
T TIGR02621 391 GADLDFDHLVTDLA--------PFESLVQRFGRVNRFGERLDGSI 427 (975)
T ss_pred CCCCCCCHHHHCCC--------HHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 03443111221144--------24578654300200022316505
No 368
>PRK06904 replicative DNA helicase; Validated
Probab=88.30 E-value=1.8 Score=22.03 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999988739733799863376469999999997----1997899931634689999999986789
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
..++.+..|+..| .-.+|-|=+|.|||-..++++.. .++|+++..-|.+ ..||+.|+-+--..
T Consensus 209 ~~LD~~t~Gl~~g-~LiViAaRPsmGKTa~alnia~n~A~~~~~~V~~fSLEM~-~~~l~~R~ls~~s~ 275 (472)
T PRK06904 209 TDLDKKTAGLQPS-DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP-AEQIMMRMLASLSR 275 (472)
T ss_pred HHHHHHHCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHHHHCC
T ss_conf 9997441588757-5799973798756899999999999955995799778799-99999999998649
No 369
>PRK10536 hypothetical protein; Provisional
Probab=88.26 E-value=1.8 Score=22.01 Aligned_cols=136 Identities=18% Similarity=0.269 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---C--CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 43899999999887397337998633764699999999971---9--978999316346899999999867898389986
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---Q--RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~---g--r~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~ 226 (805)
.|...|..|.. . .-....|..|||||++-+...-+. + +..++.=|.......| .|+|.+.-+=+-
T Consensus 63 ~Q~~yi~~i~~----~-~ivf~~GpAGTGKT~lA~a~Al~~l~~~~~~kIIltRP~V~~ge~l-----GfLPGdl~EK~~ 132 (262)
T PRK10536 63 AQLHYLKAIES----K-QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDL-----GFLPGDIAEKFA 132 (262)
T ss_pred HHHHHHHHHHH----C-CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC-----CCCCCCHHHHHH
T ss_conf 49999999861----9-8399989998758999999999999858886899966787567666-----769898799887
Q ss_pred ECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCC-CCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCH
Q ss_conf 2134444210155543210221035889999999999998549-984998277896168983477225799941981117
Q gi|254780991|r 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305 (805)
Q Consensus 227 S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~-~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~ 305 (805)
-|. -|-.|.+ ++.+.. +.+..+... ...|-|.+.+-+-|. ++-..+|+..|-++...
T Consensus 133 Pyl--------~Pi~D~L-------~~~lg~---~~~~~~~~~e~G~Iei~PlafmRGr----Tf~na~IIvDEaQN~T~ 190 (262)
T PRK10536 133 PYF--------RPVYDVL-------VRRLGA---SFMQYCLRPEIGKVEIAPFAYMRGR----TFENAVVILDEAQNVTA 190 (262)
T ss_pred HHH--------HHHHHHH-------HHHHCH---HHHHHHHHHHCCCEEEEEHHHHCCC----CCCCEEEEEEHHHCCCH
T ss_conf 888--------7899999-------999685---9999998730594899875874477----51442899841212899
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 87532343117656
Q gi|254780991|r 306 KELLSSLVKQQYKR 319 (805)
Q Consensus 306 ~~~~~~l~~~~Y~R 319 (805)
.++..-+...+..-
T Consensus 191 ~qmk~iLTRiG~~S 204 (262)
T PRK10536 191 AQMKMFLTRLGENV 204 (262)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99988985425996
No 370
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=88.23 E-value=1.1 Score=23.60 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8999999998873973379986337646999999999719--97899931634689999999986789838998
Q gi|254780991|r 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ--RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 (805)
Q Consensus 154 ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~g--r~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f 225 (805)
.++++++.. +.....+.|+.|=||+||+.+-..+..... ..+-+++=|=+.-+.=-.+.. .||...-+++
T Consensus 88 ~~~~eqik~-~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~e-LFG~~kGaft 159 (403)
T COG1221 88 QELREQIKA-YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAE-LFGHEKGAFT 159 (403)
T ss_pred HHHHHHHHH-HCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCHHHHH-HHCCCCCEEE
T ss_conf 999999986-18999847986688753889999999861213589879977777376777777-7320000002
No 371
>KOG0736 consensus
Probab=88.19 E-value=1.5 Score=22.73 Aligned_cols=118 Identities=25% Similarity=0.272 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHH----------CCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHH-----------HHHH
Q ss_conf 3899999999887----------397337998633764699999999971997899931634689-----------9999
Q gi|254780991|r 153 QPAAIAQLLKGIH----------SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA-----------QLYS 211 (805)
Q Consensus 153 Q~~Ai~~L~~~l~----------~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~-----------QL~~ 211 (805)
+++-+-.+++-+. ......||||.+|||||-+...+..++|.+.+=. +--.|+. +.+.
T Consensus 406 ~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~ev-dc~el~~~s~~~~etkl~~~f~ 484 (953)
T KOG0736 406 LEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEV-DCYELVAESASHTETKLQAIFS 484 (953)
T ss_pred CHHHHHHHHHHHCCCCCCCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEC-CHHHHHHCCCCHHHHHHHHHHH
T ss_conf 027999999984865585300133553799867999875799999999838725701-3898864363313789999999
Q ss_pred HHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHH-------CCCCEEEECCHHHHCCC
Q ss_conf 99986789838998621344442101555432102210358899999999999985-------49984998277896168
Q gi|254780991|r 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-------ERNDCIVVSSVSCIYGI 284 (805)
Q Consensus 212 rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~-------~~~~~IVVgsrSAIfgl 284 (805)
+-+-. .++|- |.-++|-.- |..+- ++ +..=+++.+-++ .+..+||||+.+.+=++
T Consensus 485 ~a~~~--~pavi-fl~~~dvl~-----------id~dg--ge--d~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~l 546 (953)
T KOG0736 485 RARRC--SPAVL-FLRNLDVLG-----------IDQDG--GE--DARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDL 546 (953)
T ss_pred HHHHC--CCEEE-EEECCCEEE-----------ECCCC--CH--HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 87526--86289-872242455-----------33777--44--277999999997202356779965999962530239
Q ss_pred CCHHH
Q ss_conf 98347
Q gi|254780991|r 285 GSVES 289 (805)
Q Consensus 285 ~~P~~ 289 (805)
.+-..
T Consensus 547 p~~i~ 551 (953)
T KOG0736 547 PADIQ 551 (953)
T ss_pred CHHHH
T ss_conf 87898
No 372
>PRK09165 replicative DNA helicase; Provisional
Probab=87.93 E-value=1.9 Score=21.87 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH------------------CCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 9999999988739733799863376469999999997------------------1997899931634689999999986
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA------------------MQRPAIVMAPNKILAAQLYSEFKNF 216 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~------------------~gr~aLvLvPei~La~QL~~rfk~~ 216 (805)
..+..+..|+..| .-.++-|=+|.|||-..++++.. .|++|++..-|.+ ..|++.|+-+-
T Consensus 193 ~~LD~~t~G~~~G-dLiIIAARPsmGKTafaLniA~n~A~~~~~~~~~~~~~~~~~g~~V~~FSLEMs-~~ql~~Rlls~ 270 (484)
T PRK09165 193 RDLDSKLGGLHPS-DLIILAGRPSMGKTALATNIAFNAAKAYLREAQPDGSKKAVNGGVVGFFSLEMS-AEQLATRILSE 270 (484)
T ss_pred HHHHHHHCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCC-HHHHHHHHHHH
T ss_conf 4599871588877-379996079997789999999999987410222233211368984899947799-99999999999
Q ss_pred CCC
Q ss_conf 789
Q gi|254780991|r 217 FPH 219 (805)
Q Consensus 217 Fp~ 219 (805)
-..
T Consensus 271 ~s~ 273 (484)
T PRK09165 271 QSE 273 (484)
T ss_pred HHC
T ss_conf 726
No 373
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=87.85 E-value=0.36 Score=27.31 Aligned_cols=59 Identities=24% Similarity=0.222 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 38999999998873973379986337646999999999----71997899931634689999999986789
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~----~~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
|.+|+.- + .| ++|.+-=.|||||-|+.+=|+ ++|=++=-++ =||=|..-+.|+|+|.+.
T Consensus 8 Q~~AV~Y-~----~G--PlLVLAGAGSGKT~VI~~KIayLi~~cgY~a~~Ia-AvTFTNKAA~EMkERVA~ 70 (677)
T TIGR01074 8 QQEAVEY-V----GG--PLLVLAGAGSGKTRVITNKIAYLIQNCGYKAKNIA-AVTFTNKAAREMKERVAK 70 (677)
T ss_pred HHHHHHH-H----CC--CCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEE-EEECCHHHHHHHHHHHHH
T ss_conf 7999986-1----58--71465177778635788899998751587876168-973523777999999985
No 374
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=87.84 E-value=0.91 Score=24.29 Aligned_cols=42 Identities=26% Similarity=0.492 Sum_probs=32.1
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 337998633764699999999971-997899931634689999999986789
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAM-QRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~-gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
...+|-|-.|||||.+...++... +...+++-+. +||.++|+
T Consensus 13 kai~laG~pGAGKS~~~~~~~~~~~~~~~v~In~D---------~~r~~~P~ 55 (191)
T pfam06414 13 VAVLLGGQPGAGKTELARALLEELGGGNVVRIDPD---------ELRTYHPD 55 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCH---------HHHHHHHH
T ss_conf 79999579988889999999875378993897135---------87887774
No 375
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.83 E-value=1.1 Score=23.55 Aligned_cols=109 Identities=16% Similarity=0.269 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHCCC-CE-EEEEEECCCCHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 3899999999887397-33-799863376469999999997-19978999316346899999999867898389986213
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE-KV-QLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~-~~-qlL~GVTGSGKTevya~lI~~-~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~ 229 (805)
|..+++.|...+..|. .+ .|++|.-|+||| +.|.++++ ++-..- .++.. .--.....+++..++.+-
T Consensus 22 Q~~vv~~L~nai~~~ri~HAyLF~GprGtGKT-T~ArilAkaLnC~~~--~~~~~-pCg~C~~C~~I~~g~~~D------ 91 (462)
T PRK06305 22 QDAVVTVLKNALRFNRAAHAYLFSGIRGTGKT-TLARIFAKALNCQNP--TEDQE-PCNQCAICKEISSGTSLD------ 91 (462)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHH-HHHHHHHHHHCCCCC--CCCCC-CCCCCHHHHHHHCCCCCC------
T ss_conf 09999999999984997623430389985999-999999999679999--88889-887668889986389998------
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHH-HHCCEEEEECCCCC
Q ss_conf 444421015554321022103588999999999999854998499827789616898347-72257999419811
Q gi|254780991|r 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES-YSQMIVQLKIGDSV 303 (805)
Q Consensus 230 ~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~-~lglIIvdEehd~~ 303 (805)
++|-|++.|..+|..| .|.+ ..-| +|.. .-...|+||.|.-+
T Consensus 92 --------------ViEiDaAs~~gVddIR-----el~e----------~v~~---~P~~~~yKVyIIDEvhmLs 134 (462)
T PRK06305 92 --------------VIEIDGASHRGIEDIR-----QINE----------TVLF---TPSKSQYKIYIIDEVHMLT 134 (462)
T ss_pred --------------EEEECCCCCCCHHHHH-----HHHH----------HHCC---CCCCCCEEEEEEECHHHCC
T ss_conf --------------6864355344668999-----9997----------7100---8867750599981521179
No 376
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=87.60 E-value=1.3 Score=23.03 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHCCC-CE-EEEEEECCCCHHHHHHHHHHH
Q ss_conf 3899999999887397-33-799863376469999999997
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE-KV-QLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~-~~-qlL~GVTGSGKTevya~lI~~ 191 (805)
|...++.|...|..|. ++ .|+.|.-|.||| +.++++++
T Consensus 21 Q~~v~~~l~nal~~~rl~haylf~G~rGvGKT-t~aRi~Ak 60 (816)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKT-TLSRIFAK 60 (816)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHH-HHHHHHHH
T ss_conf 49999999999970986314751178988888-99999999
No 377
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=87.57 E-value=0.42 Score=26.80 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=26.3
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHC---CCC---EEEEECCHH
Q ss_conf 337998633764699999999971---997---899931634
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAM---QRP---AIVMAPNKI 204 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~---gr~---aLvLvPei~ 204 (805)
.+.|+-|.||||||...-.+|..+ ..| -++|+-=+.
T Consensus 39 pH~Lv~G~tGsGKS~~l~~li~sl~~~~~p~~v~l~liD~K~ 80 (202)
T pfam01580 39 PHLLIAGATGSGKSTFLNTLILSLAARHSPEEVRLYLIDPKG 80 (202)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 868996589998009999999999873796206999974896
No 378
>pfam01949 DUF99 Protein of unknown function DUF99. The function of this archaebacterial protein family is unknown.
Probab=87.56 E-value=2 Score=21.71 Aligned_cols=68 Identities=26% Similarity=0.310 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 4389999999988739-73379986337646999999999-71997899931634689999999986789
Q gi|254780991|r 152 DQPAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIE-AMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g-~~~qlL~GVTGSGKTevya~lI~-~~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
|--.+|..++.+.... -+..+|.|+|=+|=-.+=+..+. ++|.|+++++=+..=-.-+..-++.+||+
T Consensus 47 DaT~~i~~mv~~~~~~~i~~V~L~Git~aGFNvvD~~~l~~~tg~PVI~V~~~~p~~~~ie~AL~khf~d 116 (185)
T pfam01949 47 DATDAIIDLVKGKFRPDIRVILLDGITFGGFNIIDIEELYEETGLPVIVVMRKEPDLEGIESALRKHFPD 116 (185)
T ss_pred CHHHHHHHHHHHCCCCCCEEEEECCEEEEEEEEECHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCC
T ss_conf 2799999999843556622999877625314884599999987998899997379868999999987899
No 379
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=87.46 E-value=1.4 Score=22.80 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 88843899999999887397--337998633764699999999971
Q gi|254780991|r 149 PSGDQPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 149 P~gdQ~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~~ 192 (805)
.-|-|+.+++.|...+.+|. +..|+.|--|+||+-+-..+.+.+
T Consensus 7 ~~~~Q~~i~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~L 52 (329)
T PRK08058 7 LTALQPIVVKMLQNSIAKNRLAHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8831899999999999859966156557899988999999999997
No 380
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=87.23 E-value=0.87 Score=24.44 Aligned_cols=26 Identities=31% Similarity=0.591 Sum_probs=19.1
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 33799863376469999999997199
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAMQR 194 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~gr 194 (805)
+-.++.||.|||||-+=..+.+++|-
T Consensus 9 ~iiVVMGVsGsGKSTig~~LA~~l~~ 34 (177)
T PRK11545 9 HIYVLMGVSGSGKSAVASAVAHQLHA 34 (177)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 59999847989999999999998199
No 381
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=87.23 E-value=2.1 Score=21.58 Aligned_cols=65 Identities=25% Similarity=0.403 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHH---HCCCCEEEEEEECCCCHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHHHHHHCCCCE
Q ss_conf 389999999988---7397337998633764699999999971----99789993163468999999998678983
Q gi|254780991|r 153 QPAAIAQLLKGI---HSREKVQLLLGVTGSGKTFTMAKVIEAM----QRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 (805)
Q Consensus 153 Q~~Ai~~L~~~l---~~g~~~qlL~GVTGSGKTevya~lI~~~----gr~aLvLvPei~La~QL~~rfk~~Fp~n~ 221 (805)
+..|+++|...+ .......|++|=||||| |+.|+.|.+. ++|-+-+ -==++.+++.+. +.||+..
T Consensus 146 ~S~am~~l~~~i~kvA~s~a~VLI~GESGtGK-ElvAr~IH~~S~R~~~PFVav-NcaAip~~l~ES--ELFGhek 217 (464)
T COG2204 146 ESPAMQQLRRLIAKVAPSDASVLITGESGTGK-ELVARAIHQASPRAKGPFIAV-NCAAIPENLLES--ELFGHEK 217 (464)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCH-HHHHHHHHHHCCCCCCCCEEE-ECCCCCHHHHHH--HHHCCCC
T ss_conf 69999999999999847799789977898758-999999986074458992563-346489888777--7614565
No 382
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=87.22 E-value=2.1 Score=21.58 Aligned_cols=126 Identities=16% Similarity=0.198 Sum_probs=63.2
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHH
Q ss_conf 32012455654226774321114755899999999873960320574026667888742158877547751888888438
Q gi|254780991|r 75 KGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQP 154 (805)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~ 154 (805)
+++.+.........+.+.++.+..|.-.| .++++++=+-.....++ +++ ..| ++
T Consensus 20 ~~~l~E~~i~~~l~eIr~ALLeADV~~~v--vk~f~~~vk~k~~g~~v---------~~~------------~~p---~q 73 (433)
T PRK00771 20 ATVIDKKTVKEVVKDIQRALLQADVNVKL--VMNLSKEIERRALEEEP---------PKG------------MSK---KE 73 (433)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHCCCCC---------CCC------------CCH---HH
T ss_conf 99889999999999999999965678799--99999999999714624---------578------------998---99
Q ss_pred HHHHH----HHHHHHC------CCCEEEEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHHCCCCE
Q ss_conf 99999----9998873------973379986337646999999999---7199789993163468999999998678983
Q gi|254780991|r 155 AAIAQ----LLKGIHS------REKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 (805)
Q Consensus 155 ~Ai~~----L~~~l~~------g~~~qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~ 221 (805)
.-++- |++-+.. .-...++.|+.|||||-+.+.+.. +.|+.+++.+-...-++ -++.++.+=-...
T Consensus 74 ~iikiv~~eL~~llg~~~~~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~Rpa-A~eQL~~la~~~~ 152 (433)
T PRK00771 74 HIIKIVYEELVKLLGEEAEILLKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPG-AYEQLKQLCEKIN 152 (433)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH-HHHHHHHHHHHCC
T ss_conf 999999999999849676566898589997378897899999999999977994678506788368-9999999998638
Q ss_pred EEEEEE
Q ss_conf 899862
Q gi|254780991|r 222 VEYFVS 227 (805)
Q Consensus 222 V~~f~S 227 (805)
|.+|.+
T Consensus 153 v~~~~~ 158 (433)
T PRK00771 153 VPFYGD 158 (433)
T ss_pred CCCCCC
T ss_conf 873178
No 383
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=87.13 E-value=0.45 Score=26.54 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=49.9
Q ss_pred EEEEECCCCCCCHHHHHHH----HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 4775188888843899999----999887397337-99863376469999999997199789993163468999999998
Q gi|254780991|r 141 FQMQTDYHPSGDQPAAIAQ----LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215 (805)
Q Consensus 141 f~l~~~~~P~gdQ~~Ai~~----L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~ 215 (805)
|...--|.|+-.|..-.+. +.+.+..|+... ..+|-||||||++|---. -+.++.|....++..
T Consensus 58 ~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~-----------~~~Gii~~~l~~lf~ 126 (568)
T COG5059 58 YAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTE-----------EEPGIIPLSLKELFS 126 (568)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCC-----------CCCCHHHHHHHHHHH
T ss_conf 887432587765799999876678999972566559985035788527831785-----------535558999999999
Q ss_pred HCCCC----EEEEEEECCCCC
Q ss_conf 67898----389986213444
Q gi|254780991|r 216 FFPHN----AVEYFVSYYDYY 232 (805)
Q Consensus 216 ~Fp~n----~V~~f~S~~~~y 232 (805)
..-+. ...+-+||+-.|
T Consensus 127 ~l~~~~~~~~~~v~is~lEiY 147 (568)
T COG5059 127 KLEDLSMTKDFAVSISYLEIY 147 (568)
T ss_pred HHHHCCCCCCHHEEHHHHHHH
T ss_conf 986321365511002689998
No 384
>TIGR00376 TIGR00376 DNA helicase, putative; InterPro: IPR004483 Eukaryotic members of this family have been characterised as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterised as helicases.; GO: 0003677 DNA binding, 0005524 ATP binding.
Probab=87.12 E-value=2.1 Score=21.54 Aligned_cols=119 Identities=20% Similarity=0.308 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHCCC-HHHHCCCCCCCC-CCCCCC-CCCCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 589999999987396-032057402666-788874-2158877547--75188888843899999999887397337998
Q gi|254780991|r 100 TPSVQALARLIQSDN-PLLKNGKIWTPH-RSWSIN-NHSKDITFFQ--MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLL 174 (805)
Q Consensus 100 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~-~~~~~~-~~~~~~~~f~--l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~ 174 (805)
.....++..+.+.+. |.-+--...+.. .|..|- ........|. |+..... .|..|+...+. .....++|
T Consensus 151 ~~~~~~~~~~~~~~~gp~~~~~~~~~g~~~p~~p~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~----~~~~~~~~ 224 (709)
T TIGR00376 151 KRLKEALRKLTENGSGPASRLLDFLLGLEAPSKPLGPEVNDFEFFDSFLNPNLNE--SQKEAVGFALS----SKDLFLIH 224 (709)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCH--HHHHHHHHHHC----CCCEEEEE
T ss_conf 8899998766541145125788987620146554322100002334552223223--46777654312----34416872
Q ss_pred EECCCCHHHHHHHHHHHC---CC--CEEEEECCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 633764699999999971---99--789993163468999999998678983899
Q gi|254780991|r 175 GVTGSGKTFTMAKVIEAM---QR--PAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224 (805)
Q Consensus 175 GVTGSGKTevya~lI~~~---gr--~aLvLvPei~La~QL~~rfk~~Fp~n~V~~ 224 (805)
|--|+|||.+...++.+. |. .+|+..|.-.....+...+...+|+..+.-
T Consensus 225 gp~g~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~p~~~~~~ 279 (709)
T TIGR00376 225 GPPGTGKTRTLVELIRQLVKRGPEERVLVTAPSNIAVDNLLERLAPLYPDLKLLR 279 (709)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 6777762156899999998528533067623531037788888764145410222
No 385
>pfam10593 Z1 Z1 domain. This uncharacterized domain was identified by Iyer and colleagues. It is found associated with a helicase domain of superfamily type II.
Probab=87.09 E-value=1.7 Score=22.27 Aligned_cols=92 Identities=22% Similarity=0.232 Sum_probs=54.5
Q ss_pred CCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHH---HHHHHHHHHC-C-CCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 1898699984587535787771179996288567444601---3776654312-7-998669998248988999999987
Q gi|254780991|r 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT---SLIQTIGRAA-R-NVNSKVILYADTITKSIQLAIDET 704 (805)
Q Consensus 630 ~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~---~~~q~~GRag-R-~~~G~~il~ad~~t~~~~~ai~e~ 704 (805)
.|..-|+||=+.|+||+-+.+.+... |+|+.. +|.|+.==-| | |-..-+=+|...-.-.-.+.|.+.
T Consensus 125 ~~~~~I~IGG~~LsRGlTleGL~vsY--------f~R~s~~~DTL~QmgRwFGYR~gY~dlcRi~~t~~~~~~f~~i~~~ 196 (231)
T pfam10593 125 NGLTVIAIGGNKLSRGLTLEGLTVSY--------FLRTSKMADTLMQMGRWFGYRPGYEDLCRLYMTEDLYEWFRHIAEA 196 (231)
T ss_pred CCEEEEEECCCCCCCCEEECCEEEEE--------EECCCCHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 77079998873024752265707999--------7068643899998455467886650215676388999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 8888888876887188530234667
Q gi|254780991|r 705 TRRREKQLEHNKKHNINPQSVKEKI 729 (805)
Q Consensus 705 ~rrr~~q~~~n~~~~i~p~~i~k~i 729 (805)
+.....|+..-...+.||+...-.+
T Consensus 197 ~e~lr~~l~~~~~~~~tP~~~~l~v 221 (231)
T pfam10593 197 EEELREQLKRMAEAGLTPKEFGLKV 221 (231)
T ss_pred HHHHHHHHHHHHHCCCCHHHHCHHH
T ss_conf 9999999999997699979958488
No 386
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=87.03 E-value=2.1 Score=21.51 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=25.1
Q ss_pred HHHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 99999999-887397337998633764699999999971
Q gi|254780991|r 155 AAIAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 155 ~Ai~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~~~ 192 (805)
.+++.|.. |++.| .-.=++|--|||||-+-+++.-.+
T Consensus 90 ~~lD~lLgGGi~~g-~ITEi~Ge~gsGKTQlc~qLav~~ 127 (318)
T PRK04301 90 KELDELLGGGIETQ-SITEFYGEFGSGKTQICHQLAVNV 127 (318)
T ss_pred HHHHHHCCCCCCCC-EEEEEECCCCCCCHHHHHHHHHHE
T ss_conf 78880547983367-078886688787035667767653
No 387
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=87.02 E-value=0.75 Score=24.92 Aligned_cols=41 Identities=32% Similarity=0.548 Sum_probs=24.6
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 986337646999999999719978999316346899999999867898389986213444421015554
Q gi|254780991|r 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241 (805)
Q Consensus 173 L~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~ 241 (805)
+-|.||||||.+--.+.+ .||+..| +|-=|||-|.+-+|..
T Consensus 4 IaG~S~SGKTTla~~L~~-------------------------~l~~~~i---I~qDdyYk~~~~~~~~ 44 (187)
T cd02024 4 ISGVTNSGKTTLAKLLQR-------------------------ILPNCCV---IHQDDFFKPEDEIPVD 44 (187)
T ss_pred EECCCCCCHHHHHHHHHH-------------------------HCCCCEE---ECCCCCCCCCCCCCHH
T ss_conf 968888759999999999-------------------------8799889---7154467884327621
No 388
>PRK08233 hypothetical protein; Provisional
Probab=86.91 E-value=0.6 Score=25.63 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=16.1
Q ss_pred EEEEECCCCHHHHHHHHHHHCC
Q ss_conf 9986337646999999999719
Q gi|254780991|r 172 LLLGVTGSGKTFTMAKVIEAMQ 193 (805)
Q Consensus 172 lL~GVTGSGKTevya~lI~~~g 193 (805)
-.-|.||||||-+--+++++.+
T Consensus 7 gIaGgSgSGKTtla~~l~~~l~ 28 (182)
T PRK08233 7 TIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEECCCCCCHHHHHHHHHHHCC
T ss_conf 9968886789999999999746
No 389
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=86.75 E-value=1.3 Score=23.07 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 3899999999887397--337998633764699999999971
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~~ 192 (805)
|.+|++.|...+++|. +..|++|-.|+||+.+-..+.+..
T Consensus 2 ~~~~We~L~~~i~~~Rl~HAyLf~Gp~G~GK~~~A~~~A~~L 43 (290)
T PRK05917 2 ENAAWEALLQRVRDQKVPSAILLHGQDLSNLSQYAYELASLI 43 (290)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 854999999999839966068768999865999999999998
No 390
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=86.75 E-value=2.2 Score=21.40 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=39.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH---HCCCCEEEEECC
Q ss_conf 888888438999999998873973379986337646999999999---719978999316
Q gi|254780991|r 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPN 202 (805)
Q Consensus 146 ~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPe 202 (805)
.|.-+++|..|+..+.. +.+-.++-|.-|+|||.++..+-+ ..|..|+=++|-
T Consensus 344 ~~~Ls~EQ~~A~~hiT~----~~~iavVvG~AGtGKStmL~aAReawEa~GyrV~GaALs 399 (992)
T PRK13889 344 GLVLSGEQADALAHVTD----GRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALS 399 (992)
T ss_pred CCCCCHHHHHHHHHHCC----CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 68879999999998647----897589983388878899999999999779889811500
No 391
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=86.75 E-value=0.76 Score=24.86 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCE
Q ss_conf 999999998873973379986337646999999999719978
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~a 196 (805)
--++.|. .++=+..--||-|=||||||..--.+.+.++=|-
T Consensus 140 velehle-eVEL~KSNILLiGPTGSGKTLLAqTLA~~L~VPf 180 (452)
T TIGR00382 140 VELEHLE-EVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 180 (452)
T ss_pred HHHHHHH-HHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf 2354444-4333006624546888526899999998738874
No 392
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=86.73 E-value=2.2 Score=21.39 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=17.1
Q ss_pred CEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 33799863376469999999997
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~ 191 (805)
+..+++|--|.|||..-..+...
T Consensus 19 ~~v~~~g~~~~~~t~~~~~~a~~ 41 (494)
T COG0464 19 KGVLLHGPPGTGKTLLARALANE 41 (494)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 21000368876503665676512
No 393
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; InterPro: IPR005863 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF, 6.3.2.15 from EC), which is required to catalyze the final step in the synthesis of the cytoplasmic precursor of the bacterial cell wall peptidoglycan. ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.. The crystal structure of the MurF apo-enzyme has been determined and refined to 2.3 A resolution. It contains three consecutive open alpha/beta-sheet domains. The topology of the N-terminal domain of MurF is unique, while its central and C-terminal domains exhibit similar mononucleotide and dinucleotide-binding folds to MurD. The apo-enzyme of MurF crystal structure reveals an open conformation with the three domains juxtaposed in a crescent-like arrangement creating a wide-open space where substrates are expected to bind. As such, catalysis is not feasible and significant domain closure is expected upon substrate binding . ; GO: 0005524 ATP binding, 0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-26-diaminopimelate-D-alanyl-D-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=86.70 E-value=0.75 Score=24.92 Aligned_cols=43 Identities=30% Similarity=0.450 Sum_probs=30.2
Q ss_pred CH-HHHHHHHHHHHHCCCCEEE-EEEECCC-CHHHH---HHHHHHHCCC
Q ss_conf 43-8999999998873973379-9863376-46999---9999997199
Q gi|254780991|r 152 DQ-PAAIAQLLKGIHSREKVQL-LLGVTGS-GKTFT---MAKVIEAMQR 194 (805)
Q Consensus 152 dQ-~~Ai~~L~~~l~~g~~~ql-L~GVTGS-GKTev---ya~lI~~~gr 194 (805)
|= -+|+++|-....+.+...- +-||||| |||=| .+.+..+.++
T Consensus 63 DtV~~AL~~lA~~~~~~~~~~~~~igiTGS~GKTTtKEm~~~iL~~~~~ 111 (462)
T TIGR01143 63 DTVLAALQALASAKREKFSAKRRVIGITGSSGKTTTKEMLAAILSHKYK 111 (462)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 6589999999999997439975899985689606799999999985359
No 394
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=86.63 E-value=1.7 Score=22.29 Aligned_cols=116 Identities=21% Similarity=0.220 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 3899999999887397--33799863376469999999997-19978999316346899999999867898389986213
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~-~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~ 229 (805)
|..+.+.|..++..|. +..|++|..|+|||-+ |.++++ ++-.. +.-. ..-.+.+.+-.+. .
T Consensus 23 Qe~Vv~tL~nAI~~gRIaHAYLF~GPRGvGKTT~-ARIfAKaLNC~~----~~d~--~~pC~~C~~~~~~--------s- 86 (718)
T PRK07133 23 QDHIIETLKNIIKSGKISHAYLFSGPHGTGKTSV-AKIFANALNCSH----KTDL--IEPCQNCIENFNN--------N- 86 (718)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHH-HHHHHHHHCCCC----CCCC--CCCCCCHHHCCCC--------C-
T ss_conf 5999999999997499750586238998688999-999999967999----9999--9977021430478--------9-
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHH-HHCCEEEEECCCCCC--HH
Q ss_conf 444421015554321022103588999999999999854998499827789616898347-722579994198111--78
Q gi|254780991|r 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES-YSQMIVQLKIGDSVE--QK 306 (805)
Q Consensus 230 ~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~-~lglIIvdEehd~~~--~~ 306 (805)
--++|-|++.|..+|..| .|.+. +-| +|.. .-...|+||+|.-+. ..
T Consensus 87 ------------~DViEIDAASn~gVDdIR-----eLie~----------v~y---~P~~gkYKVyIIDEvHMLS~~AfN 136 (718)
T PRK07133 87 ------------LDIIEMDAASNNGVDEIR-----ELREN----------VKN---LPQISKYKIYIIDEVHMLSKSAFN 136 (718)
T ss_pred ------------CCEEEECCCCCCCHHHHH-----HHHHH----------HCC---CCCCCCEEEEEEECCCCCCHHHHH
T ss_conf ------------873775455668889999-----99998----------255---887787249999662007999999
Q ss_pred HHHHHHHH
Q ss_conf 75323431
Q gi|254780991|r 307 ELLSSLVK 314 (805)
Q Consensus 307 ~~~~~l~~ 314 (805)
.+.+-+..
T Consensus 137 ALLKtLEE 144 (718)
T PRK07133 137 ALLKTLEE 144 (718)
T ss_pred HHHHHHCC
T ss_conf 99985027
No 395
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=86.62 E-value=0.88 Score=24.37 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=23.3
Q ss_pred CCCCEE--EEEEECCCCHHHHHHHHHHH----CCCCEEEE
Q ss_conf 397337--99863376469999999997----19978999
Q gi|254780991|r 166 SREKVQ--LLLGVTGSGKTFTMAKVIEA----MQRPAIVM 199 (805)
Q Consensus 166 ~g~~~q--lL~GVTGSGKTevya~lI~~----~gr~aLvL 199 (805)
.+.+.+ +|.|..|||||- .|++.++ .|-++.+|
T Consensus 15 ~~h~g~vlWlTGLSGsGKsT-iA~Al~~~L~~~G~~~~~L 53 (187)
T TIGR00455 15 NKHRGVVLWLTGLSGSGKST-IANALEKKLEKKGYRVYVL 53 (187)
T ss_pred CCCCEEEEEEECCCCCHHHH-HHHHHHHHHHHCCCEEEEE
T ss_conf 27973898511688563579-9999999999669749997
No 396
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=86.32 E-value=2 Score=21.77 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=15.8
Q ss_pred EEEEHHHHHCCCCCCCCCEEEEECCC
Q ss_conf 99984587535787771179996288
Q gi|254780991|r 635 VLVGINLLREGLDIPECGLVAILDAD 660 (805)
Q Consensus 635 iLvgt~~~akGlD~p~v~lV~i~dAD 660 (805)
|=|-|==.+|||-||=|=|..+.+.+
T Consensus 744 VrImTIHkSKGLEfPiVflp~~~~~~ 769 (1139)
T COG1074 744 VRIMTIHKSKGLEFPIVFLPFILSKR 769 (1139)
T ss_pred EEEEEEECCCCCCCCEEEECCCCCCC
T ss_conf 89999853577889989975888888
No 397
>PRK10867 signal recognition particle protein; Provisional
Probab=86.30 E-value=2.3 Score=21.24 Aligned_cols=57 Identities=19% Similarity=0.367 Sum_probs=36.4
Q ss_pred EEEEEECCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 79986337646999999999----71997899931634689999999986789838998621
Q gi|254780991|r 171 QLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 (805)
Q Consensus 171 qlL~GVTGSGKTevya~lI~----~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~ 228 (805)
.++.|+-|||||-+.+.+.. +.++++|+.+-...-+ --++.++.+=-...|.+|.++
T Consensus 103 Im~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~Rp-aA~eQL~~la~~~~v~~~~~~ 163 (453)
T PRK10867 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP-AAIKQLETLAEQVGVDFFPSD 163 (453)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH-HHHHHHHHHHHHCCCCEECCC
T ss_conf 9997468885185899999999973898379855887705-899999999985198043678
No 398
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=86.25 E-value=1.2 Score=23.50 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=21.8
Q ss_pred CEEEEEEECCCCHHHHHHHHHH----HCCCCEEEEE
Q ss_conf 3379986337646999999999----7199789993
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMA 200 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~----~~gr~aLvLv 200 (805)
...+|.|..|||||-+ |++.+ +.|+.+-+|=
T Consensus 24 ~viW~TGLSGsGKSTi-A~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 24 AVIWFTGLSGSGKSTI-ANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred EEEEEECCCCCCHHHH-HHHHHHHHHHCCCEEEEEC
T ss_conf 5999646888878799-9999999997597589855
No 399
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=86.25 E-value=2.3 Score=21.22 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=65.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 88888438999999998873973379986337646999999999---719978999316346899999999867898389
Q gi|254780991|r 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223 (805)
Q Consensus 147 ~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~ 223 (805)
+.-+++|..||..+.. +.+-.++.|.-|+|||.++..+-+ ..|..|+=+++ +.--...+..==|=. ..
T Consensus 380 ~~Ls~EQ~~Av~hiT~----~~~Ia~VvG~AGaGKStmL~aAReawEa~GyrV~GaAL----sGkAAegLe~~sGI~-Sr 450 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAG----AERIAAVIGRAGAGKTTMMKAAREAWEAAGYRVVGGAL----AGKAAEGLEKEAGIA-SR 450 (1102)
T ss_pred CCCCHHHHHHHHHHCC----CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECC----CHHHHHHHHHCCCCC-CH
T ss_conf 1389999999998537----88668998428887889999999999977977980150----078999775346953-03
Q ss_pred EEEEC-CCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHH-HCCCCEEEECCHHHHC--CCCCHH
Q ss_conf 98621-34444210155543210221035889999999999998-5499849982778961--689834
Q gi|254780991|r 224 YFVSY-YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL-LERNDCIVVSSVSCIY--GIGSVE 288 (805)
Q Consensus 224 ~f~S~-~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l-~~~~~~IVVgsrSAIf--gl~~P~ 288 (805)
-.+|. +.+.+...-++..|.++=-+++...--...| ..... ..|-.+|.||-..=+- +.|++|
T Consensus 451 TlAs~e~~w~~gr~~L~~~dVlVIDEAGMVgsrqmar--vl~~ae~aGAKvVLVGD~~QLQpIeAGaaF 517 (1102)
T PRK13826 451 TLSSWELRWNQGRDQLDNKTVFVLDEAGMVSSRQMAL--FVEAVTRAGAKLVLVGDPEQLQPIEAGAAF 517 (1102)
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH--HHHHHHHCCCEEEEECCHHHHCCCCCCHHH
T ss_conf 3899998743586556787389984555655799999--999999759989996887882761046889
No 400
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=86.21 E-value=1.4 Score=22.84 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 9999999988739-73379986337646999999999
Q gi|254780991|r 155 AAIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIE 190 (805)
Q Consensus 155 ~Ai~~L~~~l~~g-~~~qlL~GVTGSGKTevya~lI~ 190 (805)
.|...+.. .| .+..++.|-+||||||..=.++.
T Consensus 81 ~Ay~~m~~---~~~~QsIiisGESGaGKTes~K~il~ 114 (677)
T smart00242 81 NAYRNMLN---DKENQSIIISGESGAGKTENTKKIMQ 114 (677)
T ss_pred HHHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 99999986---39992799968898887799999999
No 401
>TIGR00603 rad25 DNA repair helicase rad25; InterPro: IPR001161 Xeroderma pigmentosum (XP) is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair , . XP-G can be corrected by a 133 Kd nuclear protein, XPGC . XPGC is an acidic protein that confers normal UV resistance in expressing cells . It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms , . XPGC cleaves one strand of the duplex at the border with the single-stranded region . XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases , ; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C-terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents XP group B (XP-B) give rise to both XP and Cockayne syndrome . The DNA/RNA helicase domain IPR001650 from INTERPRO is also present in this group of proteins.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006289 nucleotide-excision repair, 0005634 nucleus.
Probab=86.14 E-value=1.1 Score=23.79 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHCCC-CEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH--CCCCEEEEEEECC
Q ss_conf 3899999999887397-337998633764699999999971997899931634689999999986--7898389986213
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF--FPHNAVEYFVSYY 229 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~-~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~--Fp~n~V~~f~S~~ 229 (805)
|.+-+. .+=+-+|. |.=+.-===|.|||.|=..+.-.+.|.+|||.-.-----|=-..|+-+ .-+..++.|-|=
T Consensus 274 QEKSLr--sKMFGNGRARSGiIVLPCGAGKsLVGvTAACTvkKs~lVLctS~VSV~QW~~QFk~WSti~d~~IcrFTSD- 350 (756)
T TIGR00603 274 QEKSLR--SKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSVLVLCTSAVSVEQWKQQFKLWSTIDDSQICRFTSD- 350 (756)
T ss_pred HHHHCC--CCCCCCCCCCCCCEECCCCCCCCHHHHHHHEEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 111044--45667861105517767788831122544202310078972671008899988752268873551102521-
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHH-CCCC-C-----HHHH-----HCCEEEE
Q ss_conf 4444210155543210221035889999999999998549984998277896-1689-8-----3477-----2257999
Q gi|254780991|r 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIG-S-----VESY-----SQMIVQL 297 (805)
Q Consensus 230 ~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAI-fgl~-~-----P~~~-----lglIIvd 297 (805)
.++| ..|.+.|||.|-|=| |+-- + -.++ -|+||.|
T Consensus 351 --------------------------~Ke~-------~~~~~gv~vsTYsMva~t~kRS~es~k~m~~l~~rEWGl~~LD 397 (756)
T TIGR00603 351 --------------------------AKEK-------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLD 397 (756)
T ss_pred --------------------------CCCC-------CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf --------------------------3576-------2665335887330002475431889999999706873179861
Q ss_pred ECCC
Q ss_conf 4198
Q gi|254780991|r 298 KIGD 301 (805)
Q Consensus 298 Eehd 301 (805)
|+|=
T Consensus 398 EVHv 401 (756)
T TIGR00603 398 EVHV 401 (756)
T ss_pred CCCC
T ss_conf 1010
No 402
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=86.08 E-value=1.5 Score=22.55 Aligned_cols=97 Identities=25% Similarity=0.293 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 43899999999887397337998633764699999999971--9978999316346899999999867898389986213
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~--gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~ 229 (805)
||.+.+..++.+ ....|+-|=||||||-+.-.+.... ..-++.+ |=+.--|+ --| +.|.+ ...
T Consensus 161 ~~a~~L~~av~~----r~NILisGGTGSGKTTlLNal~~~i~~~eRvIti--EDtaELql------~~p-h~vrL-~TR- 225 (355)
T COG4962 161 RAAKFLRRAVGI----RCNILISGGTGSGKTTLLNALSGFIDSDERVITI--EDTAELQL------AHP-HVVRL-ETR- 225 (355)
T ss_pred HHHHHHHHHHHH----CEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEE--EEHHHHCC------CCC-CEEEE-EEC-
T ss_conf 999999999862----0159996787887999999997157976508998--12366446------998-55788-634-
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHH
Q ss_conf 444421015554321022103588999999999999854998499827789
Q gi|254780991|r 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280 (805)
Q Consensus 230 ~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSA 280 (805)
| |. +|-.-. -.||--.-++|.-+.|.||||-+--
T Consensus 226 ----~----~n----~Eg~ge-----vtm~dLvkn~LRmRPDRIiVGEVRG 259 (355)
T COG4962 226 ----P----PN----VEGTGE-----VTMRDLVKNALRMRPDRIIVGEVRG 259 (355)
T ss_pred ----C----CC----CCCCCE-----EEHHHHHHHHHHCCCCCEEEEEECC
T ss_conf ----8----87----777655-----8899999987532865368888607
No 403
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=85.97 E-value=1 Score=23.84 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 5554544468675420
Q gi|254780991|r 522 RPTTIVVSATPGSWEL 537 (805)
Q Consensus 522 ~~~~~~~satPg~~e~ 537 (805)
..++.|.|..||+=..
T Consensus 292 tG~cLYISGVPGTGKT 307 (650)
T PTZ00112 292 TGQILYISGVPGTGKT 307 (650)
T ss_pred CCCEEEEECCCCCCCH
T ss_conf 6656999789999800
No 404
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=85.97 E-value=1.7 Score=22.32 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHH--HHCCCCCCC
Q ss_conf 124444777753321120145101133--311446555
Q gi|254780991|r 421 RLEQRITYDLEMLETTGSCQSIENYSR--YLTGRNPGE 456 (805)
Q Consensus 421 rL~qR~~~dle~l~e~G~~~gienyS~--~L~~r~~ge 456 (805)
.+.++....--.++..|+...+|.... -+.+.-||+
T Consensus 345 ~l~~~~~~v~~~l~~~Gf~~~~Etlna~~A~~aqLPGn 382 (815)
T PRK13873 345 VADEKLRLVEKVIQGRDFTCMPETLNAVEAWLGSLPGH 382 (815)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCC
T ss_conf 99999999999998589579981312199998609998
No 405
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=85.96 E-value=2.1 Score=21.56 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=28.2
Q ss_pred HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 999999887397337998633764699999999971
Q gi|254780991|r 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 157 i~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~ 192 (805)
|+....+++. .+...|.|+.|+|||++--.+...+
T Consensus 184 i~~~~~sLkt-KknvIL~G~pGtGKT~lAk~lA~~l 218 (459)
T PRK11331 184 IETILKRLTI-KKNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred HHHHHHHHCC-CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999998545-8827965899988789999999997
No 406
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=85.92 E-value=0.79 Score=24.72 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=21.3
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 99863376469999999997199789993163
Q gi|254780991|r 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK 203 (805)
Q Consensus 172 lL~GVTGSGKTevya~lI~~~gr~aLvLvPei 203 (805)
+.|||-|||||-..-+++.+.. ++++|..
T Consensus 2 vV~gvpGsGKSt~I~~l~~~~~---~~~~p~~ 30 (226)
T pfam01443 2 VVHGVPGCGKSTLIRKLLRTDL---TVIRPTA 30 (226)
T ss_pred EEEECCCCCHHHHHHHHHHHCC---CCCCCCH
T ss_conf 5940799988999999986478---6423227
No 407
>PRK03846 adenylylsulfate kinase; Provisional
Probab=85.71 E-value=1.1 Score=23.67 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=45.2
Q ss_pred CEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf 33799863376469999999997---199789993163468999999998678983899862134444210155543210
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~~i 245 (805)
...+|.|..|||||-+--.+.++ .|.++++|=- ++||..|..+- + |+
T Consensus 25 ~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDG---------D~lR~~l~~dl-----g-fs--------------- 74 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDG---------DNVRHGLCSDL-----G-FS--------------- 74 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECH---------HHHHHHHCCCC-----C-CC---------------
T ss_conf 699987999998899999999999975997599777---------99987436678-----9-89---------------
Q ss_pred HHHCCCCHHHH-HHHHHHHHHHHCCCCEEEECCHH
Q ss_conf 22103588999-99999999985499849982778
Q gi|254780991|r 246 EKESSINEQID-RMRHSATRSLLERNDCIVVSSVS 279 (805)
Q Consensus 246 ~k~~s~n~~i~-~~R~~a~~~l~~~~~~IVVgsrS 279 (805)
..+..+ ..|+.....++...-.|||.|.=
T Consensus 75 -----~~dR~~n~~r~~~lak~l~~~G~iVIvs~I 104 (198)
T PRK03846 75 -----DADRKENIRRVGEVAKLMVDAGLVVLTAFI 104 (198)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf -----999999999999999999858983664147
No 408
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=85.70 E-value=1 Score=23.85 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=24.2
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 3379986337646999999999719978999
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~gr~aLvL 199 (805)
.--||.|=||||||++.=.+.+-++-|-.+.
T Consensus 110 sNILliGPTG~GKTlla~tLAk~l~vPF~ia 140 (411)
T PRK05342 110 SNILLIGPTGSGKTLLAQTLARILNVPFAIA 140 (411)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 5389989999778899999999869998998
No 409
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=85.67 E-value=1.3 Score=23.05 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=16.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 999999999719978999316346899999999867
Q gi|254780991|r 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 (805)
Q Consensus 182 Tevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~F 217 (805)
-++|+++-.+.+. -+.|.-|==-++.+++-....|
T Consensus 427 i~~yl~a~~~~~~-~~~L~~NfRS~~~vv~~vN~lF 461 (1181)
T PRK10876 427 IFTYMKARSEVSA-HYTLDTNWRSAPGMVNSVNKLF 461 (1181)
T ss_pred HHHHHHHHHCCCC-EEECCCCCCCCHHHHHHHHHHH
T ss_conf 9999986324355-3588768899479999999999
No 410
>PRK00889 adenylylsulfate kinase; Provisional
Probab=85.62 E-value=1.1 Score=23.56 Aligned_cols=81 Identities=21% Similarity=0.248 Sum_probs=45.8
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 39733799863376469999999997---199789993163468999999998678983899862134444210155543
Q gi|254780991|r 166 SREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242 (805)
Q Consensus 166 ~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d 242 (805)
+| ...+|.|..|||||-+--.+.++ .+.++++|=- +.+|..|..+. +|
T Consensus 3 kg-~viWltGlsgSGKTTia~~l~~~L~~~~~~~~~LDG---------D~lR~~l~~~l-----gf-------------- 53 (175)
T PRK00889 3 RG-VTVWFTGLSGAGKTTISHALAEKLRARGYPVEVLDG---------DIVRTNLSKGL-----GF-------------- 53 (175)
T ss_pred CC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC---------HHHHHHHCCCC-----CC--------------
T ss_conf 88-899988989999999999999999986996799776---------88887536788-----98--------------
Q ss_pred CCHHHHCCCCHHHH-HHHHHHHHHHHCCCCEEEECCHHHHC
Q ss_conf 21022103588999-99999999985499849982778961
Q gi|254780991|r 243 TYIEKESSINEQID-RMRHSATRSLLERNDCIVVSSVSCIY 282 (805)
Q Consensus 243 ~~i~k~~s~n~~i~-~~R~~a~~~l~~~~~~IVVgsrSAIf 282 (805)
+..+..+ ..|......++.+.-.+||.|.-+.|
T Consensus 54 -------s~~dR~~n~~r~~~la~~l~~~g~~vIvs~isp~ 87 (175)
T PRK00889 54 -------SKEDRDTNIRRIGFVAHLLTRHGVIVLVSAISPY 87 (175)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf -------9899999999999999999818986888504799
No 411
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=85.21 E-value=2.6 Score=20.87 Aligned_cols=95 Identities=24% Similarity=0.354 Sum_probs=62.6
Q ss_pred HHHCCHH----HHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCC-------CCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 1114755----89999999987396032057402666788874215-------887754775188888843899999999
Q gi|254780991|r 94 ISEQTMT----PSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHS-------KDITFFQMQTDYHPSGDQPAAIAQLLK 162 (805)
Q Consensus 94 ~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~f~l~~~~~P~gdQ~~Ai~~L~~ 162 (805)
|+++-|| ..+|.=||-=.-+.-+.|-|++-..=+.+.++.+. |.++.=....=|.| |+|+-|+.|.=
T Consensus 409 MlAG~V~~PvlRLAQ~WQDFQq~~Ia~~RlGDiLn~P~E~~~d~g~aalP~l~G~i~F~nirFRY~p--D~PeVL~nl~L 486 (703)
T TIGR01846 409 MLAGRVSQPVLRLAQLWQDFQQVGIAIERLGDILNSPTEPSSDAGLAALPELKGSITFENIRFRYKP--DSPEVLSNLSL 486 (703)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC--CCCHHHHCCCC
T ss_conf 3136302358989987666887766653121005868488999873035422572678753314688--87178732687
Q ss_pred HHHCCCCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 887397337998633764699999999971
Q gi|254780991|r 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 163 ~l~~g~~~qlL~GVTGSGKTevya~lI~~~ 192 (805)
.|+.|+ .-=.-|=.||||. |..+++++.
T Consensus 487 ~I~~Ge-~IGIvGpSGSGKS-TLTKL~QRL 514 (703)
T TIGR01846 487 DIKPGE-VIGIVGPSGSGKS-TLTKLLQRL 514 (703)
T ss_pred CCCCCE-EEEEECCCCCCHH-HHHHHHHHH
T ss_conf 657865-7998727898678-999998861
No 412
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.19 E-value=0.36 Score=27.28 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=21.4
Q ss_pred EEECCCCHHHHHHHHHHHC----CCCEEEEECCHHH
Q ss_conf 8633764699999999971----9978999316346
Q gi|254780991|r 174 LGVTGSGKTFTMAKVIEAM----QRPAIVMAPNKIL 205 (805)
Q Consensus 174 ~GVTGSGKTevya~lI~~~----gr~aLvLvPei~L 205 (805)
+=.||||||.|||.+|-+. =|.-|+.|---..
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~ni 38 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANI 38 (812)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCHHHEEEEECCHHH
T ss_conf 433588700599999999997340418998521168
No 413
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=85.17 E-value=1.6 Score=22.49 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=44.3
Q ss_pred CEEEEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf 3379986337646999999999---7199789993163468999999998678983899862134444210155543210
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~~i 245 (805)
...++.|..|||||.+--.+-+ +.++++++|=- +++|.-|..+ ++|+
T Consensus 3 ~viW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDG---------D~~R~~l~~d--------lgys------------- 52 (157)
T pfam01583 3 CTVWFTGLSGSGKSTIANALERKLFAQGISVYVLDG---------DNVRHGLNKD--------LGFS------------- 52 (157)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC---------HHHHCCCCCC--------CCCC-------------
T ss_conf 899988989999999999999999975997799768---------8775012577--------7989-------------
Q ss_pred HHHCCCCHHHH-HHHHHHHHHHHCCCCEEEECCHHHHC
Q ss_conf 22103588999-99999999985499849982778961
Q gi|254780991|r 246 EKESSINEQID-RMRHSATRSLLERNDCIVVSSVSCIY 282 (805)
Q Consensus 246 ~k~~s~n~~i~-~~R~~a~~~l~~~~~~IVVgsrSAIf 282 (805)
..+..+ ..|+.....++...-.+||.+.-+.|
T Consensus 53 -----~~~R~~n~~r~~~lak~l~~~g~~VIvs~isp~ 85 (157)
T pfam01583 53 -----EEDRTENIRRIAEVAKLFADAGLIVITSFISPY 85 (157)
T ss_pred -----HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf -----899999999999999998428965887215789
No 414
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=84.93 E-value=1.3 Score=23.07 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=30.7
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 337998633764699999999971997899931634689999999
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
+-.++.|=|+||||.+-+++.++.|-+++-+ =..|.|..+
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~-----DSmQvYr~m 43 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISL-----DSMQVYRGL 43 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEC-----CHHHHCCCC
T ss_conf 3799989887577899999999829928930-----235531888
No 415
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=84.68 E-value=2.7 Score=20.70 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=17.6
Q ss_pred EEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 99863376469999999997199
Q gi|254780991|r 172 LLLGVTGSGKTFTMAKVIEAMQR 194 (805)
Q Consensus 172 lL~GVTGSGKTevya~lI~~~gr 194 (805)
-+-|-+|||||.+--.+.+..++
T Consensus 3 gIaG~SgSGKTT~a~~L~~~l~~ 25 (196)
T pfam00485 3 GVAGSSGAGKTTVARTFVSIFGR 25 (196)
T ss_pred EEECCCCCCHHHHHHHHHHHHCC
T ss_conf 99899857199999999999660
No 416
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=84.64 E-value=0.84 Score=24.53 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=34.4
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 88775477518888884389999999988739733799863376469999999997199
Q gi|254780991|r 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 (805)
Q Consensus 136 ~~~~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr 194 (805)
.+++||-++--....++.+ | +.. ..-..++++.|-||||||-.+-=++++++|
T Consensus 490 ~~gtPfyfNFH~~~~~~~~-A-~~~----~r~~GhT~IfG~~G~GKTtLl~fL~a~~~k 542 (931)
T TIGR00929 490 QSGTPFYFNFHVRDAKEKN-A-DEG----KRVLGHTLIFGPTGSGKTTLLNFLLAQLQK 542 (931)
T ss_pred CCCCCEECCCCCCCCCCCC-C-CCC----HHHCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 7898602245457212465-0-003----110387778888898469999999999742
No 417
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=84.62 E-value=2.8 Score=20.68 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=24.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHH----HHCCCCEE-EEEEECCCCHHHHHHHHHHHC
Q ss_conf 547751888888438999999998----87397337-998633764699999999971
Q gi|254780991|r 140 FFQMQTDYHPSGDQPAAIAQLLKG----IHSREKVQ-LLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 140 ~f~l~~~~~P~gdQ~~Ai~~L~~~----l~~g~~~q-lL~GVTGSGKTevya~lI~~~ 192 (805)
.|.....|. ++.+++|..- ...+.+.- =+-|.+|||||-+--.+.+.+
T Consensus 6 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~rR~lIgIaG~pGSGKSTlA~~l~~~L 58 (230)
T PRK09270 6 GLDVQAQYL-----DELIEEVHKPLMLAAEPQRRTVVGIAGPPGAGKSTLAETLWEAL 58 (230)
T ss_pred CEEEEEEEC-----HHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 616674514-----56689999999871599971899998999889999999999998
No 418
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=84.61 E-value=1.9 Score=21.83 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 9999999988739-73379986337646999999999
Q gi|254780991|r 155 AAIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIE 190 (805)
Q Consensus 155 ~Ai~~L~~~l~~g-~~~qlL~GVTGSGKTevya~lI~ 190 (805)
.|...+.. .+ .+..++.|-+||||||.--.+++
T Consensus 75 ~Ay~~m~~---~~~~QsIiisGESGaGKTes~K~il~ 108 (679)
T cd00124 75 RAYRNMLR---DRRNQSIIISGESGAGKTENTKLIMK 108 (679)
T ss_pred HHHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 99999986---39996799967898888899999999
No 419
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=84.45 E-value=2.8 Score=20.63 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=54.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH---HHHHHCCC--CEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 888843899999999887397337998633764699999---99997199--78999316346899999999867
Q gi|254780991|r 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA---KVIEAMQR--PAIVMAPNKILAAQLYSEFKNFF 217 (805)
Q Consensus 148 ~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya---~lI~~~gr--~aLvLvPei~La~QL~~rfk~~F 217 (805)
.-|.||.+|++.+..-++.+.+..+|..--|=||+-..= .++.+.+. .++|-+|++.-+..|..-...-|
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l 285 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGL 285 (758)
T ss_pred HCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 037518999999999970898359998677874768874999999973377208996797788999999998769
No 420
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=84.44 E-value=2.4 Score=21.09 Aligned_cols=41 Identities=29% Similarity=0.479 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 43899999999887397--337998633764699999999971
Q gi|254780991|r 152 DQPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~~ 192 (805)
-|+.|++.|...+.+|. +..+++|-.|+||+.+-...++..
T Consensus 8 Gq~~~~~~L~~ai~~~rl~hAyLF~Gp~G~GK~~~A~~fa~~L 50 (314)
T PRK07399 8 GQPLAIELLTAAIEQNRIAPAYLFAGPEGVGRKLAALRFIEGL 50 (314)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9499999999999859967448778999832999999999998
No 421
>TIGR00609 recB exodeoxyribonuclease V, beta subunit; InterPro: IPR004586 Exodeoxyribonuclease V, or RecBCD holoenzyme, (3.1.11.5 from EC) is a multifunctional nuclease with potent ATP-dependent exodeoxyribonuclease activity. Ejection of RecD, as occurs at chi recombinational hotspots, cripples exonuclease activity in favor of recombinagenic helicase activity. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. The complex catalyses exonucleolytic cleavage in either the 5' to 3' or 3' to 5' direction to yield 5-phosphooligonucleotides in the presence of ATP. This is the beta subunit .; GO: 0005524 ATP binding, 0008854 exodeoxyribonuclease V activity, 0006281 DNA repair.
Probab=84.30 E-value=1.8 Score=22.00 Aligned_cols=153 Identities=15% Similarity=0.087 Sum_probs=77.0
Q ss_pred CEEEEEEECCCCHHHHHHHHHHH----CC------C-----CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEC-----
Q ss_conf 33799863376469999999997----19------9-----7899931634689999999986789838998621-----
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEA----MQ------R-----PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----- 228 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~----~g------r-----~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~----- 228 (805)
...||=-=-|+||||+.++|+=+ .| | .+||++=+.+-|.-|..|.|+... +++..+..+
T Consensus 10 g~~LiEASAGTGKTFtI~~l~lRlll~~gg~~~F~~~~~v~eiLVvTFT~AAT~ELk~RIr~~i~-~a~~~~~~~Giakl 88 (1324)
T TIGR00609 10 GTFLIEASAGTGKTFTIAALYLRLLLEGGGENAFKRPLTVEEILVVTFTNAATEELKTRIRERIH-EALRALKAKGIAKL 88 (1324)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHH
T ss_conf 40688741761489999999999998515122024434612121112227888998899888899-99999864573020
Q ss_pred --------CCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC-CCCEEEECC--HHHHCCCCCHHHHHCCEEEE
Q ss_conf --------3444421015554321022103588999999999999854-998499827--78961689834772257999
Q gi|254780991|r 229 --------YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSS--VSCIYGIGSVESYSQMIVQL 297 (805)
Q Consensus 229 --------~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~-~~~~IVVgs--rSAIfgl~~P~~~lglIIvd 297 (805)
...||-|.-.+..+++..--..++.. ...+...|.+... .=|.--|-| =+|=+ ++.-.+-
T Consensus 89 GddtlsdGiaay~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~A~~~~D~a~i~TIHgfC~~----~L~~~~f---- 159 (1324)
T TIGR00609 89 GDDTLSDGIAAYCEEHEETSDELPELLLEAIQDE-KVKQAISRLRLALATLDEAAIYTIHGFCQR----MLEQYAF---- 159 (1324)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----
T ss_conf 3203456689987425668873246888873475-488999999999987547664466334356----6775323----
Q ss_pred ECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf 419811178753234311765633877545331872
Q gi|254780991|r 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333 (805)
Q Consensus 298 Eehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg 333 (805)
..+.++.+.+......+.+.. -.+++|..|..-+
T Consensus 160 -~~~~~f~~~l~~~~~~l~~~~-~~df~r~~f~~~~ 193 (1324)
T TIGR00609 160 -ESDEIFEQELIEDESLLLAEI-VKDFWRRNFYNLP 193 (1324)
T ss_pred -HHCCCHHHHCCCCHHHHHHHH-HHHHHHHHCCCCH
T ss_conf -203300021035877999999-9999986304664
No 422
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=84.17 E-value=0.93 Score=24.19 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=32.6
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEE---EECCHHHH-HHHHHHHHHHCCCC
Q ss_conf 98633764699999999971997899---93163468-99999999867898
Q gi|254780991|r 173 LLGVTGSGKTFTMAKVIEAMQRPAIV---MAPNKILA-AQLYSEFKNFFPHN 220 (805)
Q Consensus 173 L~GVTGSGKTevya~lI~~~gr~aLv---LvPei~La-~QL~~rfk~~Fp~n 220 (805)
|.|--|||||.| ++.+++.|-+++- +++++-.. +..+..++..||.+
T Consensus 5 iTG~IgsGKStv-~~~l~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~ 55 (179)
T pfam01121 5 LTGGIGSGKSTV-ANLFADLGVPIVDADVIARQVVEPGSPALAAIVDHFGPD 55 (179)
T ss_pred EECCCCCCHHHH-HHHHHHCCCCEEECHHHHHHHHHCCHHHHHHHHHHHCHH
T ss_conf 857864789999-999998799199180999999865858999999981998
No 423
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=84.10 E-value=1.4 Score=22.84 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=25.2
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 3379986337646999999999719978999
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~gr~aLvL 199 (805)
+--||.|=||+||||+.=.+.+=++-|-+..
T Consensus 51 kNILmIGPTGvGKTeIARrLAkl~~aPFvkv 81 (442)
T PRK05201 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (442)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 3168878888667899999999848985875
No 424
>pfam02534 TraG TraG/TraD family. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems.
Probab=84.06 E-value=2.9 Score=20.51 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=41.1
Q ss_pred CCCCEEEEEEECCCCHHHHH--HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 39733799863376469999--9999971997899931634689999999986789838998
Q gi|254780991|r 166 SREKVQLLLGVTGSGKTFTM--AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 (805)
Q Consensus 166 ~g~~~qlL~GVTGSGKTevy--a~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f 225 (805)
.+.++.++.|=||||||.-+ =+++ ..+-+++|+=|---|...+..-++++ |. .|.+|
T Consensus 42 ~~~~H~lviaptgsGKt~~~ViPnLl-~~~~S~VV~DpKGEl~~~Ta~~r~~~-G~-~V~v~ 100 (468)
T pfam02534 42 GDFSHVLVFAGTGSGKGVGVVIPNLL-VWKGSIVVLDPKGELWELTSGIREKQ-GR-KVFVL 100 (468)
T ss_pred CCCCEEEEECCCCCCCCCCCHHHHHH-HCCCCEEEEECCHHHHHHHHHHHHHC-CC-EEEEE
T ss_conf 99767999848999723424298885-18997899948488999999999977-99-69999
No 425
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=83.98 E-value=1.6 Score=22.36 Aligned_cols=58 Identities=31% Similarity=0.398 Sum_probs=36.4
Q ss_pred HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCC-CEEEE---ECCHHHHHHHHHHHHHHC-CCCEEEEEEECC
Q ss_conf 99988739733799863376469999999997199-78999---316346899999999867-898389986213
Q gi|254780991|r 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR-PAIVM---APNKILAAQLYSEFKNFF-PHNAVEYFVSYY 229 (805)
Q Consensus 160 L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr-~aLvL---vPei~La~QL~~rfk~~F-p~n~V~~f~S~~ 229 (805)
|..++..+ +.-++-|=||||||=.+=.++....+ .=||. ++|+.| .+ | |.|.+|.|+-
T Consensus 151 l~~Ai~~~-knIii~GGTgSGKTTf~kal~~~IP~~ER~iTIED~~E~~~----------~hhp-N~V~L~ysk~ 213 (328)
T TIGR02788 151 LRLAIASR-KNIIISGGTGSGKTTFLKALVKEIPKDERLITIEDTRELFL----------PHHP-NKVHLFYSKG 213 (328)
T ss_pred HHHHHHCC-CEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCC----------CCCC-CEEEEEECCC
T ss_conf 99998738-91999906897189999999732762252788852011478----------8898-6456553464
No 426
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=83.97 E-value=0.7 Score=25.15 Aligned_cols=83 Identities=17% Similarity=0.278 Sum_probs=57.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 4775188888843899999999887397337998633764699999999971-----99789993163468999999998
Q gi|254780991|r 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKILAAQLYSEFKN 215 (805)
Q Consensus 141 f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~-----gr~aLvLvPei~La~QL~~rfk~ 215 (805)
=.|...|.+ +|+.+++.+.=.++.|++ .-+.|=|||||| |.++++... |.=+|==+|=-++...-+.+.-+
T Consensus 363 ~~ls~~~pg--~~~~vl~~V~L~l~~G~r-~Ai~G~SG~GKs-TLL~~L~G~l~P~~G~vtl~G~~~~~~~~~evrr~v~ 438 (566)
T TIGR02868 363 RDLSVGYPG--APPNVLDGVSLDLPPGER-VAILGPSGSGKS-TLLATLAGLLDPLQGEVTLDGVPVSSLSEDEVRRRVS 438 (566)
T ss_pred EEEEEECCC--CCHHHHCCCCCCCCCCCC-EEEECCCCCCHH-HHHHHHHHHCCCCCCCEEECCCCHHHCCCCHHEHHEE
T ss_conf 877652698--734654278641138860-898668876578-9999998402899991787773243257311000003
Q ss_pred HCCCCEEEEEEEC
Q ss_conf 6789838998621
Q gi|254780991|r 216 FFPHNAVEYFVSY 228 (805)
Q Consensus 216 ~Fp~n~V~~f~S~ 228 (805)
+|+. ...+|.+=
T Consensus 439 ~~aQ-~aHlF~tt 450 (566)
T TIGR02868 439 VFAQ-DAHLFDTT 450 (566)
T ss_pred ECCC-CCCCCCCC
T ss_conf 1278-86211054
No 427
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=83.95 E-value=2.8 Score=20.65 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 3899999999887397--337998633764699999999971
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~~ 192 (805)
|..+++.|...+..|. +..|++|--|+|||-+-.-+.+.+
T Consensus 19 Qe~iv~~L~nAi~~~Rl~HAYLFsGPrGvGKTt~ArifAkaL 60 (523)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFSRAL 60 (523)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 499999999999859967158757899868899999999997
No 428
>pfam00063 Myosin_head Myosin head (motor domain).
Probab=83.90 E-value=2.3 Score=21.30 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 89999999988739-73379986337646999999999
Q gi|254780991|r 154 PAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIE 190 (805)
Q Consensus 154 ~~Ai~~L~~~l~~g-~~~qlL~GVTGSGKTevya~lI~ 190 (805)
..|...+.. .+ .+..++.|-+||||||.--.++.
T Consensus 73 ~~Ay~~m~~---~~~~QsIiiSGESGAGKTes~K~il~ 107 (679)
T pfam00063 73 DRAYRHMLR---DKENQCIVISGESGAGKTENTKKLMQ 107 (679)
T ss_pred HHHHHHHHH---HCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999997---08982799967886888999999999
No 429
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=83.72 E-value=1.5 Score=22.58 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=42.7
Q ss_pred EEEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf 79986337646999999999---719978999316346899999999867898389986213444421015554321022
Q gi|254780991|r 171 QLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247 (805)
Q Consensus 171 qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~~i~k 247 (805)
.++.|..|||||-+--.+-+ +.++++++|-- +++|+.|..+ . + |+
T Consensus 2 iW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lDG---------D~iR~~l~~~-l----g-ys----------------- 49 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG---------DNVRHGLNKD-L----G-FS----------------- 49 (149)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC---------HHHHHHHCCC-C----C-CC-----------------
T ss_conf 8987999999999999999999986997599774---------8899773655-5----9-88-----------------
Q ss_pred HCCCCHHHH-HHHHHHHHHHHCCCCEEEECCHHHHC
Q ss_conf 103588999-99999999985499849982778961
Q gi|254780991|r 248 ESSINEQID-RMRHSATRSLLERNDCIVVSSVSCIY 282 (805)
Q Consensus 248 ~~s~n~~i~-~~R~~a~~~l~~~~~~IVVgsrSAIf 282 (805)
..+... ..|+.....++...-.+||.+.-+.|
T Consensus 50 ---~~~R~~n~~r~~~lak~l~~qg~~VIvs~isp~ 82 (149)
T cd02027 50 ---REDREENIRRIAEVAKLLADAGLIVIAAFISPY 82 (149)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf ---788999999999999999837982788416788
No 430
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=83.59 E-value=2.4 Score=21.16 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 3899999999887397--33799863376469999999997
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~ 191 (805)
|....+.|..+|..|. +..|+.|.-|+|||- .|+++++
T Consensus 21 Q~~v~~~l~na~~~~r~~haylf~G~rG~GKtt-~ari~ak 60 (643)
T PRK07994 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTS-IARLLAK 60 (643)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH-HHHHHHH
T ss_conf 799999999999829866348745899888889-9999999
No 431
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=83.55 E-value=0.89 Score=24.33 Aligned_cols=29 Identities=31% Similarity=0.578 Sum_probs=22.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHC-CCCEEEE
Q ss_conf 7998633764699999999971-9978999
Q gi|254780991|r 171 QLLLGVTGSGKTFTMAKVIEAM-QRPAIVM 199 (805)
Q Consensus 171 qlL~GVTGSGKTevya~lI~~~-gr~aLvL 199 (805)
.+|.|-+|+|||.+.-++.+.+ +++...+
T Consensus 2 vll~Gp~G~GKT~la~~la~~l~~~~~~~i 31 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAALSNRPVFYV 31 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf 899989975699999999998079831112
No 432
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=83.51 E-value=1.1 Score=23.57 Aligned_cols=115 Identities=25% Similarity=0.280 Sum_probs=64.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHHHH
Q ss_conf 54775188888843899999999887397337998633764699999999971997---899931634689999999986
Q gi|254780991|r 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP---AIVMAPNKILAAQLYSEFKNF 216 (805)
Q Consensus 140 ~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~---aLvLvPei~La~QL~~rfk~~ 216 (805)
.|+|..+|+- .|...+=|+|..||||| +++++|+=+-|| -|+|
T Consensus 11 ~f~Ld~~~~~----------------pg~GvtAlFG~SGsGKT-tli~~iaGL~rp~~G~i~l----------------- 56 (361)
T TIGR02142 11 DFELDVDLTL----------------PGQGVTALFGRSGSGKT-TLIRLIAGLTRPDEGEIVL----------------- 56 (361)
T ss_pred CEEEEEEEEC----------------CCCEEEEEECCCCCHHH-HHHHHHHHCCCCCCCEEEE-----------------
T ss_conf 5477776532----------------87406871258997078-9999987316756687998-----------------
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHH-HHCCEE
Q ss_conf 7898389986213444421015554321022103588999999999999854998499827789616898347-722579
Q gi|254780991|r 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES-YSQMIV 295 (805)
Q Consensus 217 Fp~n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~-~lglII 295 (805)
|-..+|-| +--|| ++|.. -.|++|
T Consensus 57 ---~G~~L~ds--------------------------------------------------~k~i~--Lp~ekRr~GYVF 81 (361)
T TIGR02142 57 ---NGEVLFDS--------------------------------------------------RKGIF--LPPEKRRIGYVF 81 (361)
T ss_pred ---CCEEEECC--------------------------------------------------CCCCC--CCCCCCEEEEEE
T ss_conf ---87462056--------------------------------------------------77667--872011353688
Q ss_pred EEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf 9941981117875323431176563387754533187247831788877888
Q gi|254780991|r 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 (805)
Q Consensus 296 vdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~ 347 (805)
.+- +.|+-...+.=-.+||.+.+....+-.+.....+|++-|- ++=+|
T Consensus 82 QeA---~LFPHl~Vr~NL~YG~~~~~~~~r~i~~~~v~~lLgi~hL-L~R~p 129 (361)
T TIGR02142 82 QEA---RLFPHLSVRGNLRYGMKRARPKERRISFERVIELLGIEHL-LERLP 129 (361)
T ss_pred ECC---EECCCHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHCCCCC-CCCCC
T ss_conf 535---5078523345512572105741213788999987467511-21678
No 433
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=83.51 E-value=3 Score=20.37 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=46.2
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHC---CCEEEE---CCCCCCHHHHHHHHHHHHC-CCCC-EEEEHHHHHCCCC
Q ss_conf 986302321246621478999999998635---966873---2576457899999999731-8986-9998458753578
Q gi|254780991|r 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYER---NIRVRY---MHSEVKTLERIEIIRDLRL-GKFD-VLVGINLLREGLD 647 (805)
Q Consensus 576 ~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~---~i~~~~---~h~~~~~~~r~~il~~~~~-g~~d-iLvgt~~~akGlD 647 (805)
+++...|..+----.-..++++|.+.+|.. |+...- .-|.+++..+. +...|.+ +... .|+--|.++.||.
T Consensus 359 r~~L~~G~~IPeWft~PeV~~eLrr~~PPr~~~G~tiwlTGLsgsGKsTiA~a-l~~~L~~~~~~~v~lLDGD~~R~~l~ 437 (568)
T PRK05537 359 RRRLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKA-LMAKLMEMRGRPVTLLDGDVVRKHLS 437 (568)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHC
T ss_conf 99986799899553877899999985687445864999845788877699999-99999971892799954688874215
Q ss_pred CCCCCEEEEECCCCCCCCCCHHH-HHHHHHHHCC--CCCCEEE
Q ss_conf 77711799962885674446013-7766543127--9986699
Q gi|254780991|r 648 IPECGLVAILDADKEGFLRSKTS-LIQTIGRAAR--NVNSKVI 687 (805)
Q Consensus 648 ~p~v~lV~i~dAD~~~f~~~~~~-~~q~~GRagR--~~~G~~i 687 (805)
- | -||-+..|. -+.|+|-.++ +.+|-+.
T Consensus 438 ~-----------d-Lgfs~~dR~enirR~~~va~~~~~~g~i~ 468 (568)
T PRK05537 438 S-----------E-LGFSKEDRDLNILRIGFVASEITKNGGIA 468 (568)
T ss_pred C-----------C-CCCCHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 5-----------7-89898899999999999999998589789
No 434
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=83.33 E-value=2.6 Score=20.89 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=39.8
Q ss_pred EEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf 799863376469999999997---1997899931634689999999986789838998621344442
Q gi|254780991|r 171 QLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234 (805)
Q Consensus 171 qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqp 234 (805)
-+.+|--.||||+-.++.+.+ .|+.++|..|.|- .||+.+.| +|+-..+.|
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD----------~R~~~~~V---~Sr~G~~~~ 60 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID----------TRYGVGKV---SSRIGLSSE 60 (201)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC----------CCCCCCEE---EECCCCCCC
T ss_conf 9997157686359999999999975980899852533----------53564336---531587665
No 435
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=83.32 E-value=2.4 Score=21.13 Aligned_cols=35 Identities=17% Similarity=0.372 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 89999999988739-733799863376469999999997
Q gi|254780991|r 154 PAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 154 ~~Ai~~L~~~l~~g-~~~qlL~GVTGSGKTevya~lI~~ 191 (805)
..|...+.. .+ .+..++.|-+||||||.--.++.-
T Consensus 74 ~~Ay~~m~~---~~~~QsIiiSGESGaGKTe~~K~il~y 109 (671)
T cd01381 74 DNAYTNMQR---EKKNQCIIISGESGAGKTESTKLILQY 109 (671)
T ss_pred HHHHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999999997---299967999579988879999999999
No 436
>KOG2373 consensus
Probab=83.31 E-value=0.52 Score=26.10 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=29.1
Q ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999971997899931634689999999986789838998
Q gi|254780991|r 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 (805)
Q Consensus 186 a~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f 225 (805)
+.+.+.++-+++-|-++..+-||++--.-+.|. ..+-++
T Consensus 135 lal~~~t~~~t~~LP~g~~~lP~~~LPyLE~F~-~i~fWl 173 (514)
T KOG2373 135 LALYEATKALTFALPHGEILLPQLVLPYLEEFD-KIYFWL 173 (514)
T ss_pred HHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHH-EEEEEE
T ss_conf 777641486378726654348277778898652-599980
No 437
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=82.92 E-value=2 Score=21.66 Aligned_cols=61 Identities=20% Similarity=0.403 Sum_probs=43.6
Q ss_pred HHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999-88739733799863376469999999997---19978999316346899999999867898
Q gi|254780991|r 157 IAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHN 220 (805)
Q Consensus 157 i~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp~n 220 (805)
+.++.. |+..| +..++.|-.|||||-.-+|.+-+ .|.++++++-+.. ...+...+++ |+-+
T Consensus 12 lD~~l~GG~p~g-~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~-~~~l~~~~~~-~g~d 76 (260)
T COG0467 12 LDEILGGGLPRG-SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES-PEELLENARS-FGWD 76 (260)
T ss_pred HHHHHCCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECC-HHHHHHHHHH-CCCC
T ss_conf 888836898899-789999389986899999999977626985899992069-8999999988-0997
No 438
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=82.90 E-value=2.5 Score=20.94 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=21.5
Q ss_pred HHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 999999988739-73379986337646999999999
Q gi|254780991|r 156 AIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIE 190 (805)
Q Consensus 156 Ai~~L~~~l~~g-~~~qlL~GVTGSGKTevya~lI~ 190 (805)
|...+.. .+ .+..++.|-+||||||.-=.++.
T Consensus 76 Ay~~m~~---~~~nQsIiisGESGaGKTe~~K~il~ 108 (674)
T cd01378 76 AYRSMKS---ENENQCVIISGESGAGKTEAAKKIMQ 108 (674)
T ss_pred HHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9999997---19993799967887888899999999
No 439
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=82.86 E-value=2.5 Score=20.93 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 9999999988739-73379986337646999999999
Q gi|254780991|r 155 AAIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIE 190 (805)
Q Consensus 155 ~Ai~~L~~~l~~g-~~~qlL~GVTGSGKTevya~lI~ 190 (805)
.|...+.. .+ .+..++.|-+||||||.--.++.
T Consensus 83 ~Ay~~m~~---~~~~QsIiiSGESGaGKTe~~K~il~ 116 (692)
T cd01385 83 VAYYNMLR---KKVNQCIVISGESGSGKTESTNFLIH 116 (692)
T ss_pred HHHHHHHH---CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99999987---39982899964898987899999999
No 440
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=82.85 E-value=2.6 Score=20.86 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 9999999988739-73379986337646999999999
Q gi|254780991|r 155 AAIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIE 190 (805)
Q Consensus 155 ~Ai~~L~~~l~~g-~~~qlL~GVTGSGKTevya~lI~ 190 (805)
.|...+.. .+ .+..++.|-+||||||..=.++.
T Consensus 77 ~Ay~~m~~---~~~nQsIiiSGESGAGKTes~K~il~ 110 (674)
T cd01384 77 AAYRAMIN---EGKSQSILVSGESGAGKTETTKMLMR 110 (674)
T ss_pred HHHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 99999997---38996699955898888999999999
No 441
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=82.82 E-value=3.1 Score=20.31 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 3899999999887397--337998633764699999999971
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~~ 192 (805)
|..+.+.|...+..|. +..|++|-.|+|||-+-..+.+.+
T Consensus 21 Qe~iv~~L~nAI~~~RiaHAYLFsGPrGvGKTTlArifAkaL 62 (613)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (613)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 299999999999849976227755899848899999999996
No 442
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=82.75 E-value=3.2 Score=20.14 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH-----------HC
Q ss_conf 7558999999998739603205740266678887421588775477518888884389999999988-----------73
Q gi|254780991|r 98 TMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-----------HS 166 (805)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~~L~~~l-----------~~ 166 (805)
|++.+. |..|..+| +-|.|+....|.+-|.| +|-..+..+.+.- ..
T Consensus 44 gv~~~~--lr~~~~~g-------------~~p~p~~~~~grR~ytl--------~ei~~lR~~l~~~~~~~~~~~p~R~~ 100 (387)
T TIGR03453 44 GVTDSY--LRQLSLEG-------------KGPQPEVLANGRRSYTL--------EQINELRRHLAQRPREALRYLPHRRG 100 (387)
T ss_pred CCCHHH--HHHHHHCC-------------CCCCCCCCCCCCEEEEH--------HHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 969999--99998669-------------99998758998258439--------99999999998624455545899999
Q ss_pred CCCEEEEEEE---CCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 9733799863---376469999999997---1997899931634689999999986789
Q gi|254780991|r 167 REKVQLLLGV---TGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 167 g~~~qlL~GV---TGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
|.+.|++-=+ -|+|||-+-+++..- .|+.||++ -|=||- -+-..||-
T Consensus 101 g~~~~VIav~N~KGGVGKTTtav~LA~~LA~~G~RVLvI----DLDPQa--nlT~~~G~ 153 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTSAHLAQYLALRGYRVLAI----DLDPQA--SLSALFGF 153 (387)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE----ECCCHH--HHHHHCCC
T ss_conf 998808999788876569999999999999779988999----537016--78875289
No 443
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=82.47 E-value=1.8 Score=22.14 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=24.9
Q ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 379986337646999999999719978999
Q gi|254780991|r 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199 (805)
Q Consensus 170 ~qlL~GVTGSGKTevya~lI~~~gr~aLvL 199 (805)
+.||.|-+|.|||.+...+.+.+|++..-+
T Consensus 1 hVLL~GppG~GKT~l~~~lA~~~~~~~~~i 30 (131)
T pfam07726 1 HVLLEGVPGLAKTLLARTLARSLGLDFRRI 30 (131)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 987898998769999999999959981688
No 444
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.37 E-value=1.8 Score=21.99 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=21.9
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHCCCCE
Q ss_conf 3973379986337646999999999719978
Q gi|254780991|r 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196 (805)
Q Consensus 166 ~g~~~qlL~GVTGSGKTevya~lI~~~gr~a 196 (805)
-+....||.|=||||||..--.+.+-++-|-
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~LnVPF 125 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPF 125 (408)
T ss_pred EEECCEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 3203179988899757799999999848984
No 445
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=82.18 E-value=3.2 Score=20.18 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 3899999999887397--33799863376469999999997
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~ 191 (805)
|+.+++.|...+.+|. +..|+.|--|+|||-+-..+.+.
T Consensus 9 q~~i~~~L~~~i~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ 49 (313)
T PRK05564 9 HENIKNRIDNSIIKGKFSHASLIVGEDGIGKSILAKEIANK 49 (313)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 29999999999987998750432799985099999999999
No 446
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=82.17 E-value=1.1 Score=23.71 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=21.7
Q ss_pred HCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHH-------HHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 31898699984587535787771179996288567444601-------3776654312799866999824
Q gi|254780991|r 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT-------SLIQTIGRAARNVNSKVILYAD 691 (805)
Q Consensus 629 ~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~-------~~~q~~GRagR~~~G~~il~ad 691 (805)
..|.+-=+. |=-.-.+|+.+...+|+ |. ..|+.++. .+.|+|-+.--|. ..|++.|
T Consensus 587 ~~G~~g~~f--Dn~~D~l~~~~~~~~gf-d~--t~ll~~~~~~~pvl~Ylf~rie~~ldG~--p~ii~iD 649 (800)
T PRK13898 587 GKGSHAAIF--DNEEDLLDFQKARVFGF-EM--TELLKDPVSLAPVLLYLFHRISISLDGT--PSMIVLD 649 (800)
T ss_pred CCCCEEECC--CCCCCCCCCCCCCEEEE-EC--HHHCCCCHHHHHHHHHHHHHHHHHCCCC--CEEEEEE
T ss_conf 699805224--89755668666808999-84--6752882048999999999999752898--2699960
No 447
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=82.05 E-value=3.3 Score=20.13 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHHC-C--------CCEEEEECCHHHHHHHHHHHHHHCCCCE
Q ss_conf 3899999999887397--337998633764699999999971-9--------9789993163468999999998678983
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEAM-Q--------RPAIVMAPNKILAAQLYSEFKNFFPHNA 221 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~~-g--------r~aLvLvPei~La~QL~~rfk~~Fp~n~ 221 (805)
|..-.+.|..++..|. +..|+.|+-|.||| +.|+++++. + .|+.-...+-.-...+ -..+|.| .
T Consensus 28 q~~~~~~l~~~~~~~~~~~a~l~~g~rg~gkt-t~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~~i---~~~~~~d-~ 102 (600)
T PRK09111 28 QEAMVRTLRNAFETGRIAQAFMLTGVRGVGKT-TTARILARALNYKGPDGVGGPTIDPCGVGEHCQAI---MEGRHVD-V 102 (600)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH---HCCCCCC-E
T ss_conf 59999999999972984204764578987899-99999999966988766689988989988658988---6689987-5
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHH-HHCCEEEEECC
Q ss_conf 89986213444421015554321022103588999999999999854998499827789616898347-72257999419
Q gi|254780991|r 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES-YSQMIVQLKIG 300 (805)
Q Consensus 222 V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~-~lglIIvdEeh 300 (805)
+|-|++.|-.+|-.| .|.+. | -| .|.. .-...|+||+|
T Consensus 103 -----------------------~e~daas~~~v~~~r-----~~~~~---~-------~~---~p~~~~~kv~iidevh 141 (600)
T PRK09111 103 -----------------------IEMDAASHTGVDDIR-----EIIES---V-------RY---RPVSARYKVYIIDEVH 141 (600)
T ss_pred -----------------------EEEECCCCCCHHHHH-----HHHHH---H-------CC---CCCCCCEEEEEEECCC
T ss_conf -----------------------885155457888999-----99986---0-------53---8877754699960011
Q ss_pred CCCC
Q ss_conf 8111
Q gi|254780991|r 301 DSVE 304 (805)
Q Consensus 301 d~~~ 304 (805)
.-+.
T Consensus 142 mls~ 145 (600)
T PRK09111 142 MLST 145 (600)
T ss_pred CCCH
T ss_conf 0579
No 448
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=81.83 E-value=3.5 Score=19.91 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHCCC-CEEEEEEECCC-CHHHH---HHHHHHHCCCCEEE
Q ss_conf 43899999999887397-33799863376-46999---99999971997899
Q gi|254780991|r 152 DQPAAIAQLLKGIHSRE-KVQLLLGVTGS-GKTFT---MAKVIEAMQRPAIV 198 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~-~~qlL~GVTGS-GKTev---ya~lI~~~gr~aLv 198 (805)
|=.+|+..|...+-... +.-.+.||||| |||=| ..++.+..|+++-+
T Consensus 91 d~r~al~~la~~fy~~ps~~l~vigVTGTNGKTTt~~~i~~il~~~g~~~~~ 142 (953)
T PRK11929 91 DLRKALGELADEWYGKPSQDLSVVAVTGTNGKTSCAQWLAQMLTRLGKPCGS 142 (953)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 8999999999998649675887899979997999999999999867998899
No 449
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=81.82 E-value=2.9 Score=20.54 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 9999999988739-73379986337646999999999
Q gi|254780991|r 155 AAIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIE 190 (805)
Q Consensus 155 ~Ai~~L~~~l~~g-~~~qlL~GVTGSGKTevya~lI~ 190 (805)
.|...+.. .| .+..++.|-+||||||.--.++.
T Consensus 80 ~Ay~~m~~---~~~~QsIiiSGESGAGKTes~K~il~ 113 (693)
T cd01377 80 NAYRSMLQ---DRENQSILITGESGAGKTENTKKVIQ 113 (693)
T ss_pred HHHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 99999997---49980699968898888999999999
No 450
>KOG3308 consensus
Probab=81.73 E-value=2.5 Score=20.95 Aligned_cols=51 Identities=27% Similarity=0.403 Sum_probs=35.6
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCC-CHHHHCCC
Q ss_conf 98633764699999999971997899931634689999999986789838998621344442101555432-10221035
Q gi|254780991|r 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT-YIEKESSI 251 (805)
Q Consensus 173 L~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~-~i~k~~s~ 251 (805)
|-|+|-||||- | +..|..+||+..+ ++-=|||-||.-+|...- ++..++.-
T Consensus 9 iSG~TnsGKTT---------------------L----ak~l~~~f~~~~l---IhqDDFyKp~~Ei~v~~~n~~~wd~~e 60 (225)
T KOG3308 9 ISGCTNSGKTT---------------------L----AKSLHRFFPGCSL---IHQDDFYKPENEIEVDYNNIDNWDLLE 60 (225)
T ss_pred EECCCCCCHHH---------------------H----HHHHHHHCCCCEE---ECCCCCCCCHHHHHCCCCCCCHHCCHH
T ss_conf 64246787768---------------------9----9999987368746---402234675534211237721110131
No 451
>KOG0745 consensus
Probab=81.66 E-value=1.8 Score=22.09 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=25.4
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHH
Q ss_conf 7337998633764699999999971997899931634689
Q gi|254780991|r 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207 (805)
Q Consensus 168 ~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~ 207 (805)
..-.||.|-||||||+.--.+.+=++-|- +++-=-+||.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPf-aIcDcTtLTQ 264 (564)
T KOG0745 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPF-AICDCTTLTQ 264 (564)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCE-EEECCCCHHH
T ss_conf 35479977888764389999999708876-8732552200
No 452
>pfam03237 Terminase_6 Terminase-like family. This family represents a group of terminase proteins.
Probab=81.54 E-value=3.6 Score=19.83 Aligned_cols=47 Identities=23% Similarity=0.301 Sum_probs=31.8
Q ss_pred EEEEECCCCHHHHHHHHHH-H----CCCCEEEEECCHHHHHHHHHH-HHHHCC
Q ss_conf 9986337646999999999-7----199789993163468999999-998678
Q gi|254780991|r 172 LLLGVTGSGKTFTMAKVIE-A----MQRPAIVMAPNKILAAQLYSE-FKNFFP 218 (805)
Q Consensus 172 lL~GVTGSGKTevya~lI~-~----~gr~aLvLvPei~La~QL~~r-fk~~Fp 218 (805)
++.|=.|||||++.+..+- . -+...+|+.|...-+.....+ +....+
T Consensus 1 ~~~ggr~~GKT~~~~~~~~~~a~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~ 53 (380)
T pfam03237 1 NILGSRQSGKTFAFAREALRHALGNGPKNQIILSASKAQARLEFKKGIIEIAG 53 (380)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 94264525283999999999998589972899979999999999999999668
No 453
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=81.34 E-value=3.6 Score=19.79 Aligned_cols=92 Identities=21% Similarity=0.241 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH------------
Q ss_conf 75589999999987396032057402666788874215887754775188888843899999999887------------
Q gi|254780991|r 98 TMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH------------ 165 (805)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~~L~~~l~------------ 165 (805)
||+.+. |..+..+| .. |.|+....|.+-|.| +|-.++......-.
T Consensus 59 gv~~~~--lr~~~~~g-------~~------p~p~~~~~grr~ytl--------~~i~~lR~~l~~~~~~~~~~~~~p~R 115 (405)
T PRK13869 59 KISDST--LRKMTLAG-------EG------PQPELASNGRRFYTL--------GQINEIRGMLAGSTRGRESIDFVPHR 115 (405)
T ss_pred CCCHHH--HHHHHHCC-------CC------CCCCCCCCCCCEECH--------HHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 969999--99998659-------99------999878998543019--------99999999997405555543458999
Q ss_pred -CCCCEEEEEEE---CCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf -39733799863---376469999999997---199789993163468999999998678
Q gi|254780991|r 166 -SREKVQLLLGV---TGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFP 218 (805)
Q Consensus 166 -~g~~~qlL~GV---TGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp 218 (805)
.|.+.|++-=+ -|+|||-+-+++..- .|+.||++ -|=||- -+-..||
T Consensus 116 ~~~~~~kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RVLlI----DLDPQg--nlS~~lG 169 (405)
T PRK13869 116 RGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV----DLDPQA--SLSALLG 169 (405)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE----ECCHHH--HHHHHHC
T ss_conf 99999828999788877659999999999999779988999----645617--8889808
No 454
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=81.26 E-value=3 Score=20.42 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 8999999998873973379986337646999999999
Q gi|254780991|r 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 (805)
Q Consensus 154 ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~ 190 (805)
..|...+... ...+..++.|-+||||||..=.++.
T Consensus 74 ~~Ay~~m~~~--~~nQsIiiSGESGaGKTestK~il~ 108 (653)
T cd01379 74 DAAYQSLVTY--NQDQCIVISGESGSGKTESAHLLVQ 108 (653)
T ss_pred HHHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9999999874--8982899957898987688999999
No 455
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=81.02 E-value=3.5 Score=19.87 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHCCC--------------CEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 3899999999887397--------------337998633764699999999971
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE--------------KVQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~--------------~~qlL~GVTGSGKTevya~lI~~~ 192 (805)
|+.+++.|...+..+. +.-|..|-.|+|||.+-..+.+.+
T Consensus 10 Qe~v~~~L~~A~~~~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l 63 (395)
T PRK07940 10 QDAVVAELRAAARAARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAAL 63 (395)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 299999999999836343443333468766037636899878899999999996
No 456
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=80.95 E-value=3.7 Score=19.69 Aligned_cols=18 Identities=39% Similarity=0.625 Sum_probs=11.8
Q ss_pred EEEECCCCHHHHHHHHHHH
Q ss_conf 9863376469999999997
Q gi|254780991|r 173 LLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 173 L~GVTGSGKTevya~lI~~ 191 (805)
+-|-+|||||-+ ++.+++
T Consensus 4 IaG~sgSGKST~-a~~l~~ 21 (220)
T cd02025 4 IAGSVAVGKSTT-ARVLQA 21 (220)
T ss_pred EECCCCCCHHHH-HHHHHH
T ss_conf 788998779999-999999
No 457
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=80.93 E-value=3.6 Score=19.76 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 8999999998873973379986337646999999999
Q gi|254780991|r 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 (805)
Q Consensus 154 ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~ 190 (805)
..|...+... ...+..++.|-+||||||.-=.++.
T Consensus 75 ~~Ay~~m~~~--~~~QsIiisGESGAGKTes~K~il~ 109 (677)
T cd01387 75 NLAFAKMLDA--KQNQCVIISGESGSGKTEATKLILR 109 (677)
T ss_pred HHHHHHHHHC--CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9999998870--9992599982797889889999999
No 458
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=80.68 E-value=3.8 Score=19.63 Aligned_cols=152 Identities=13% Similarity=0.147 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHHCCC--CEEEEEC--CHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 43899999999887397--33799863376469999999997199--7899931--634689999999986789838998
Q gi|254780991|r 152 DQPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAP--NKILAAQLYSEFKNFFPHNAVEYF 225 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~~gr--~aLvLvP--ei~La~QL~~rfk~~Fp~n~V~~f 225 (805)
.|.+|+-+=...+-+|. ...||+|.-|+||.-..-.++.+.+. .-||=|+ ++.--|-|++.+|.+ | ..+.+|
T Consensus 67 ~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~-~-~kFIlF 144 (287)
T COG2607 67 RQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRAR-P-EKFILF 144 (287)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCC-C-CEEEEE
T ss_conf 89999999899997288652367763777774799999999987417707997688886579999999618-8-608999
Q ss_pred EECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCC------CCEEEECC--HHHHCCCCCHHHHHCCEEEE
Q ss_conf 62134444210155543210221035889999999999998549------98499827--78961689834772257999
Q gi|254780991|r 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER------NDCIVVSS--VSCIYGIGSVESYSQMIVQL 297 (805)
Q Consensus 226 ~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~------~~~IVVgs--rSAIfgl~~P~~~lglIIvd 297 (805)
.--+++-. +-..+.+..++++| ..+++.+| |--+ .|+.+. |
T Consensus 145 cDDLSFe~----------------------gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHL----l~e~~~-----d 193 (287)
T COG2607 145 CDDLSFEE----------------------GDDAYKALKSALEGGVEGRPANVLFYATSNRRHL----LPEDMK-----D 193 (287)
T ss_pred ECCCCCCC----------------------CCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC----CCHHHH-----H
T ss_conf 56777777----------------------8138999999853885568870799971587533----627664-----2
Q ss_pred ECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCC-CEEEECCCCCHHHHHH
Q ss_conf 41981117875323431176563387754533187-2478317888778887
Q gi|254780991|r 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC-GDSIEIFPSHLEDVAW 348 (805)
Q Consensus 298 Eehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~r-g~ILdsatps~Es~~~ 348 (805)
.++-. ---|..|.+...=.++.| |.-|+.+|++.++|--
T Consensus 194 n~~~~------------~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~ 233 (287)
T COG2607 194 NEGST------------GEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLK 233 (287)
T ss_pred CCCCC------------CCCCHHHHHHHHHCHHHHCCEEECCCCCCHHHHHH
T ss_conf 77840------------23580677877625464234045036878899999
No 459
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=80.19 E-value=3.2 Score=20.15 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=16.9
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 999974148999999999999999
Q gi|254780991|r 772 HLAADNLNFEEAARIRDEIKRLKS 795 (805)
Q Consensus 772 ~~aa~~l~fE~Aa~lRD~i~~l~~ 795 (805)
-|+-++||.+..+.+-+.++++..
T Consensus 626 DE~ts~LD~~~e~~i~~~l~~~~~ 649 (694)
T TIGR03375 626 DEPTSAMDNRSEERFKDRLKRWLA 649 (694)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 787568899999999999998669
No 460
>PRK13342 recombination factor protein RarA; Reviewed
Probab=80.03 E-value=4 Score=19.48 Aligned_cols=46 Identities=26% Similarity=0.391 Sum_probs=29.2
Q ss_pred HHHHHH---HHHHHHHCCC-CEEEEEEECCCCHHHHHHHHHHH-CCCCEEEE
Q ss_conf 389999---9999887397-33799863376469999999997-19978999
Q gi|254780991|r 153 QPAAIA---QLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVM 199 (805)
Q Consensus 153 Q~~Ai~---~L~~~l~~g~-~~qlL~GVTGSGKTevya~lI~~-~gr~aLvL 199 (805)
|...+. -|..-++++. ...+|+|--|+||| +.|++|++ ++.+.+-|
T Consensus 18 Q~hllg~~~~L~~~i~~~~~~s~Il~GPPG~GKT-TlA~iiA~~~~~~f~~l 68 (417)
T PRK13342 18 QEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKT-TLARIIAGATDAEFEAL 68 (417)
T ss_pred CHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCHH-HHHHHHHHHHCCCEEEE
T ss_conf 8776089719999997699975998896999899-99999999868988996
No 461
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=79.97 E-value=4 Score=19.47 Aligned_cols=40 Identities=28% Similarity=0.291 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 3899999999887397--337998633764699999999971
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE--KVQLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~--~~qlL~GVTGSGKTevya~lI~~~ 192 (805)
|..|.+.|...+.+|. +..|+.|-.|+|||-+-..+++.+
T Consensus 22 qe~~~~~L~~a~~~grl~HA~Lf~Gp~GiGK~tlA~~~A~~l 63 (363)
T PRK07471 22 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 63 (363)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199999999999859976458767999818899999999998
No 462
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=79.84 E-value=3.8 Score=19.63 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 999999998873973379986337646999999999
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~ 190 (805)
.|...+... ...+..++-|-+||||||.-=.+++
T Consensus 75 ~Ay~~m~~~--~~~QsIiiSGESGaGKTe~~K~il~ 108 (691)
T cd01380 75 EAYKQMTRD--EKNQSIIVSGESGAGKTVSAKYIMR 108 (691)
T ss_pred HHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999863--9980699962799987799999999
No 463
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=79.76 E-value=3.9 Score=19.56 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=18.8
Q ss_pred CCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 73379986337646999999999
Q gi|254780991|r 168 EKVQLLLGVTGSGKTFTMAKVIE 190 (805)
Q Consensus 168 ~~~qlL~GVTGSGKTevya~lI~ 190 (805)
.+..++.|-+||||||.-=.+++
T Consensus 91 ~QsIiiSGESGAGKTestK~il~ 113 (717)
T cd01382 91 SQSIIVSGESGAGKTENTKFVLR 113 (717)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 94799966899997899999999
No 464
>KOG0054 consensus
Probab=79.75 E-value=3.1 Score=20.30 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=38.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 775477518888884389999999988739733799863376469999999997199
Q gi|254780991|r 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 (805)
Q Consensus 138 ~~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr 194 (805)
+........|.+ .+++..++.|.=-++.|. -...-|-|||||+=....+.-|+.+
T Consensus 519 i~i~~~sfsW~~-~~~~~tL~dIn~~i~~G~-lvaVvG~vGsGKSSLL~AiLGEm~~ 573 (1381)
T KOG0054 519 IEIKNGSFSWDS-ESPEPTLKDINFEIKKGQ-LVAVVGPVGSGKSSLLSAILGEMPK 573 (1381)
T ss_pred EEEEEEEEECCC-CCCCCCCCCEEEEECCCC-EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 798510685189-998653014158962898-8999899988889999999658755
No 465
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); InterPro: IPR005291 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are integral membrane proteins and they are involved in the transport of chloride ions. Many of these proteins are the cystis fibrosis transmembrane conductor regulators (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.; GO: 0005254 chloride channel activity, 0006811 ion transport, 0016020 membrane.
Probab=79.70 E-value=2.3 Score=21.24 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=21.2
Q ss_pred CC-CCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCC
Q ss_conf 57-64578999999997318986999845875357877
Q gi|254780991|r 613 HS-EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649 (805)
Q Consensus 613 h~-~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p 649 (805)
|+ ...++.+.+.-..+|+-. .+--++.++--|||=
T Consensus 809 ~sv~~g~~~~~~~~~s~RK~~--~~~~~~~~~sElDIY 844 (1534)
T TIGR01271 809 HSVSRGENKREKLRASVRKVS--LITQANELASELDIY 844 (1534)
T ss_pred HHHHCCCCHHHHHHHHHHHHH--HCCHHHHHHHHHHHH
T ss_conf 775316305677766543343--146023444221232
No 466
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=79.66 E-value=2.6 Score=20.91 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHH
Q ss_conf 999998630232124662147899999999863596687325764578999999997318986999845
Q gi|254780991|r 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640 (805)
Q Consensus 572 ~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~ 640 (805)
++-+++...-|+..+-+.+| +++|.+.|+.+.-+|.-+... +..+++.++.|++|++|-|-
T Consensus 3 ~~~ak~l~~lGf~l~AT~GT-------a~~L~~~Gi~v~~l~~ki~~g-~~~i~~~i~~~~IdlVInt~ 63 (90)
T smart00851 3 VELAKRLAELGFELVATGGT-------AKFLREAGLPVKTLHPKVHGG-ILAILDLIKNGEIDLVINTL 63 (90)
T ss_pred HHHHHHHHHCCCEEEECCHH-------HHHHHHCCCCCEEEECCCCCC-CCCHHHHHCCCCEEEEEEEC
T ss_conf 89999999889989981258-------999997599710430244356-10489981978879999846
No 467
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=79.62 E-value=4 Score=19.45 Aligned_cols=33 Identities=33% Similarity=0.588 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 9999999988739-73379986337646999999999
Q gi|254780991|r 155 AAIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIE 190 (805)
Q Consensus 155 ~Ai~~L~~~l~~g-~~~qlL~GVTGSGKTevya~lI~ 190 (805)
.|...+.. .+ .+..++-|=+||||||..=.++.
T Consensus 75 ~Ay~~m~~---~~~nQsIIiSGESGAGKTEstK~im~ 108 (767)
T cd01386 75 TAYRALLE---TRRDQSIIFLGRSGAGKTTSCKHALE 108 (767)
T ss_pred HHHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 99999997---08995799955898888899999999
No 468
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.36 E-value=0.25 Score=28.43 Aligned_cols=51 Identities=20% Similarity=0.476 Sum_probs=36.2
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 75188888843899999999887397337998633764699999999971997
Q gi|254780991|r 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 (805)
Q Consensus 143 l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~ 195 (805)
|+-.|...+..-.|++.+.=.++.| ...-|.|-+||||| |.+++|.-.-+|
T Consensus 7 l~k~y~~~~~~~~al~~vsl~i~~G-e~~~ivG~SGsGKS-Tllr~i~gL~~p 57 (233)
T cd03258 7 VSKVFGDTGGKVTALKDVSLSVPKG-EIFGIIGRSGAGKS-TLIRCINGLERP 57 (233)
T ss_pred EEEEECCCCCEEEEEECCEEEECCC-CEEEEECCCCCHHH-HHHHHHHCCCCC
T ss_conf 6999799997799984828899999-99999889805899-999999679999
No 469
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=79.24 E-value=2.7 Score=20.77 Aligned_cols=65 Identities=25% Similarity=0.358 Sum_probs=42.1
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf 9999988739733799863376469999999997199789993163468999999998678983899862134444
Q gi|254780991|r 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233 (805)
Q Consensus 158 ~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yq 233 (805)
++|.+.+..| ...+|.|--|||||...-.+++..|-..-|-+|-=+|. |.|. .+ + .. +.|+|+|+
T Consensus 6 ~~ia~~l~~G-~vi~L~G~LGaGKTtfvr~i~~~lg~~~~V~SPTF~lv-~~Y~-----~~-~-~~--i~H~DlYR 70 (123)
T pfam02367 6 KRLAQLLKAG-DVVLLSGDLGAGKTTFVRGLAKGLGITGNVTSPTFTLV-NVYE-----PG-K-LP--LYHYDLYR 70 (123)
T ss_pred HHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEE-EEEC-----CC-C-CE--EEEEEEEC
T ss_conf 9999768999-79999888778899999999998599887379955889-9970-----89-9-63--99998332
No 470
>pfam05872 DUF853 Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. One member from Brucella melitensis is thought to be an ATPase.
Probab=79.20 E-value=2.3 Score=21.22 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=32.9
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEE---------ECCHHHHHHHHHHHHHH
Q ss_conf 9733799863376469999999997---19978999---------31634689999999986
Q gi|254780991|r 167 REKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVM---------APNKILAAQLYSEFKNF 216 (805)
Q Consensus 167 g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvL---------vPei~La~QL~~rfk~~ 216 (805)
-.++=|.-|.||+|||.+.--+.|. .|-|+.+. +--=.-.+.+..|..+.
T Consensus 20 ~NRHGLiaGATGTGKTvTLq~lAE~~S~~GVPvf~aDvKGDLsGia~~G~~~~kl~~R~~~~ 81 (504)
T pfam05872 20 ANRHGLIAGATGTGKTVTLQVLAESFSDAGVPVFLADVKGDLSGIAAPGEPQDKLAARAASI 81 (504)
T ss_pred CCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCHHHHHHHHHC
T ss_conf 05216622657786178999999987454993887105661432168899975799999971
No 471
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=79.19 E-value=1.9 Score=21.83 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=27.5
Q ss_pred EEEEEECCCCHHHHHHHHHHH-----CCCCEEEEECCHHH
Q ss_conf 799863376469999999997-----19978999316346
Q gi|254780991|r 171 QLLLGVTGSGKTFTMAKVIEA-----MQRPAIVMAPNKIL 205 (805)
Q Consensus 171 qlL~GVTGSGKTevya~lI~~-----~gr~aLvLvPei~L 205 (805)
.+.+|-|||||.-..=++|-- ..-.+.+++|++.-
T Consensus 90 ~vVYGPTG~GKSQLlRNlis~~lI~P~PETVfFItPq~~m 129 (370)
T pfam02456 90 GVVYGPTGCGKSQLLRNLLSCQLIQPIPETVFFITPQKDM 129 (370)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
T ss_conf 9998899877899999987346677999728997677786
No 472
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=79.05 E-value=4 Score=19.44 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 89999999988739-73379986337646999999999
Q gi|254780991|r 154 PAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIE 190 (805)
Q Consensus 154 ~~Ai~~L~~~l~~g-~~~qlL~GVTGSGKTevya~lI~ 190 (805)
..|...+.. .+ .+..++.|-+||||||.-=.++.
T Consensus 80 ~~Ay~~m~~---~~~nQsIiiSGESGaGKTe~~K~il~ 114 (677)
T cd01383 80 DTAYNEMMR---DEVNQSIIISGESGAGKTETAKIAMQ 114 (677)
T ss_pred HHHHHHHHH---CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999987---28980899967888985899999999
No 473
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=79.00 E-value=4.3 Score=19.26 Aligned_cols=126 Identities=19% Similarity=0.218 Sum_probs=76.5
Q ss_pred CCEEEEEEECCCCHHHHHHHH---HHHCCCCEEEEECCHHH-------HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
Q ss_conf 733799863376469999999---99719978999316346-------89999999986789838998621344442101
Q gi|254780991|r 168 EKVQLLLGVTGSGKTFTMAKV---IEAMQRPAIVMAPNKIL-------AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237 (805)
Q Consensus 168 ~~~qlL~GVTGSGKTevya~l---I~~~gr~aLvLvPei~L-------a~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay 237 (805)
+.+..+||-+|.|||-.+-.+ +.+.++.++++..|... -..-..+||.+|-+-.|.+. |=-|
T Consensus 141 yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvtae~F~~~~v~ai~~~~~~~Fr~~yr~~DvLLI----DDIQ---- 212 (455)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSSELFTEHLVSAIRSGEMQRFRSFYRNVDALFI----EDIE---- 212 (455)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEE----EHHH----
T ss_conf 78758878999978999999999853799869997499999999999975889999999963887763----1478----
Q ss_pred CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 55543210221035889999999999998549984998277896168983477225799941981117875323431176
Q gi|254780991|r 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317 (805)
Q Consensus 238 ~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~~~~~~l~~~~Y 317 (805)
+ .+--+.+-.+=+.+.++|.+...+||+.+-. +|.+-.|+ +
T Consensus 213 ------f----l~gK~~tqeEff~tfN~L~~~~KQIVitsDr------~P~el~~l------~----------------- 253 (455)
T PRK12422 213 ------V----FSGKGATQEEFFHTFNSLHTEGKLIVISSSY------APGDLKAM------E----------------- 253 (455)
T ss_pred ------H----HHCCHHHHHHHHHHHHHHHHCCCEEEEECCC------CHHHHHHH------H-----------------
T ss_conf ------8----7284889999999999999859969996898------95765126------8-----------------
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf 56338775453318724783178887788
Q gi|254780991|r 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 (805)
Q Consensus 318 ~R~D~a~~RG~f~~rg~ILdsatps~Es~ 346 (805)
+ -.+..| ..|.++++-||..|+.
T Consensus 254 ---~--RL~SRf-~~GL~v~I~~Pd~etr 276 (455)
T PRK12422 254 ---E--RLISRF-EWGIAIPIHPLTREGL 276 (455)
T ss_pred ---H--HHHHHH-HCCEEECCCCCCHHHH
T ss_conf ---9--999886-3761321689998999
No 474
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=78.94 E-value=4.3 Score=19.24 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=43.4
Q ss_pred HHHH---HHHHHHHHHCCC---CEEEEEEECCCCHHHHHHHHHHHCCCCEE--------EEECCHHHHHHHHHHHHHHC
Q ss_conf 3899---999999887397---33799863376469999999997199789--------99316346899999999867
Q gi|254780991|r 153 QPAA---IAQLLKGIHSRE---KVQLLLGVTGSGKTFTMAKVIEAMQRPAI--------VMAPNKILAAQLYSEFKNFF 217 (805)
Q Consensus 153 Q~~A---i~~L~~~l~~g~---~~qlL~GVTGSGKTevya~lI~~~gr~aL--------vLvPei~La~QL~~rfk~~F 217 (805)
|.+| .--+++-+++|. +..||-|-.|+|||.+-+.+.+++|..+- |-..|+.-|-=|.+-||.--
T Consensus 29 Q~~AReAagiiv~mIk~~K~aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~~i~gSEvyS~E~kKTE~L~qafRrsI 107 (395)
T pfam06068 29 QEKAREAAGVIVEMIKEGKIAGRAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMKKTEALTQAFRKAI 107 (395)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHEEECCCCCHHHHHHHHHHHHH
T ss_conf 4999999899999997277577389987799988899999999974879973450011121256548899999998875
No 475
>PRK09087 hypothetical protein; Validated
Probab=78.76 E-value=4.3 Score=19.20 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 389999999988739-7337998633764699999999971997899931634689999999986789838998621344
Q gi|254780991|r 153 QPAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g-~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~ 231 (805)
-..|++-|. ...+. .....|+|-.|||||-...-..++.+- +++-+ ..+..... ....++.+.+ =-.|
T Consensus 29 N~~a~~~l~-~~~~w~~~~~~L~Gp~gsGKTHL~~~~~~~~~a--~~~~~-~~~~~~~~----~~~~~~~~~i--dd~d- 97 (226)
T PRK09087 29 NRAAVSLVD-RWPNWPSPVVVLAGPVGSGKTHLASIWREKADA--LLVHP-NEIGSDAA----NAAAERPVLI--EDID- 97 (226)
T ss_pred HHHHHHHHH-HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--EEECH-HHCCHHHH----HHHCCCCEEE--ECCC-
T ss_conf 999999998-472677775899899999886999999998099--68366-87474667----6532798899--7487-
Q ss_pred CCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCC--CCCH--HHHHCCEEEEECCC
Q ss_conf 4421015554321022103588999999999999854998499827789616--8983--47722579994198
Q gi|254780991|r 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG--IGSV--ESYSQMIVQLKIGD 301 (805)
Q Consensus 232 yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfg--l~~P--~~~lglIIvdEehd 301 (805)
. ...++ ..=+..++.+.+....++++++...-. +..| .+.++...+.+.+.
T Consensus 98 ---------------~-~~~dE---e~LFhl~N~~~~~~~~LLlts~~~p~~l~~~L~DL~SRL~~~~~~~I~~ 152 (226)
T PRK09087 98 ---------------A-GGFDE---TGLFHLINSVRQAGTSLLMTSRLWPSAWNVKLPDLKSRLKAATVVEIGE 152 (226)
T ss_pred ---------------C-CCCCH---HHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCCEEEEECC
T ss_conf ---------------7-77478---9999999999853987999889895666762468999985785798359
No 476
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=78.51 E-value=2.3 Score=21.19 Aligned_cols=40 Identities=35% Similarity=0.363 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHCCC-CEEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 3899999999887397-3379986337646999999999719
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQ 193 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~-~~qlL~GVTGSGKTevya~lI~~~g 193 (805)
|..||++|++=+.+=| +|.+|||==|-||| |.|++.=+-.
T Consensus 160 QerAI~aLlaK~aSPfPQHiiLYGPPGVGKT-TaARl~LEe~ 200 (616)
T TIGR02903 160 QERAIKALLAKLASPFPQHIILYGPPGVGKT-TAARLALEEA 200 (616)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHH-HHHHHHHHHC
T ss_conf 4689999997631888660785573388478-9999987621
No 477
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=78.29 E-value=3.4 Score=20.02 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=26.0
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 337998633764699999999971997899931634
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~ 204 (805)
+..+|.|.+||||+.++..++++..-.-...++-.|
T Consensus 3 r~iil~Gpsg~GK~tl~~~l~~~~~~~~~~~v~~TT 38 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTT 38 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 779999999999999999998639645057787672
No 478
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=78.27 E-value=2.4 Score=21.08 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.3
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 733799863376469999999997
Q gi|254780991|r 168 EKVQLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 168 ~~~qlL~GVTGSGKTevya~lI~~ 191 (805)
....||.|..|||||-.+.++...
T Consensus 3 ~ptvLllGl~~sGKT~Lf~~L~~~ 26 (181)
T pfam09439 3 QPAVIIAGLCDSGKTSLFTLLTTG 26 (181)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 886999868999899999999759
No 479
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=78.23 E-value=4.5 Score=19.09 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCC-CHHHH
Q ss_conf 4389999999988739733799863376-46999
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGS-GKTFT 184 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGS-GKTev 184 (805)
|-.+|+..|..-....+.. -+-||||| |||=|
T Consensus 82 d~~~al~~la~~~~~~~~~-~vIgITGSnGKTTt 114 (452)
T PRK10773 82 DTRLAFGQLAAWVRQQVPA-RVVALTGSSGKTSV 114 (452)
T ss_pred CHHHHHHHHHHHHHHCCCC-CEEEEEECCCCCHH
T ss_conf 9999999999987515997-58999916996259
No 480
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=78.17 E-value=3.4 Score=20.03 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHC------CCCEE--EEEEECCCCHHHHHHHHHH
Q ss_conf 38999999998873------97337--9986337646999999999
Q gi|254780991|r 153 QPAAIAQLLKGIHS------REKVQ--LLLGVTGSGKTFTMAKVIE 190 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~------g~~~q--lL~GVTGSGKTevya~lI~ 190 (805)
|+-|.+.++..+.. ..++- -+||-||+||++|- ++|+
T Consensus 30 Qhla~~~v~~al~~~l~~~~p~KpLVlSfHG~tGtGKn~vs-~liA 74 (127)
T pfam06309 30 QHLVKQLVVRSVKGHWENPKPRKPLVLSFHGWTGTGKNFVA-EIIA 74 (127)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHH-HHHH
T ss_conf 79899999999999974899999748870189998798999-9999
No 481
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.66 E-value=0.5 Score=26.23 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 4389999999988739733799863376469999999997199
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr 194 (805)
++..|++.+.=.+..| ....|.|-+||||| |.++++.-.-+
T Consensus 5 ~e~~AL~~Vsl~i~~G-e~vaiiG~sGsGKS-TLl~~l~GLl~ 45 (276)
T PRK13634 5 FERRALYDVNVSIPSG-SYVAIIGHTGSGKS-TLLQHLNGLLK 45 (276)
T ss_pred CCCEEEECCEEEECCC-CEEEEECCCCCHHH-HHHHHHHCCCC
T ss_conf 9766651447799899-89999999996999-99999974999
No 482
>CHL00195 ycf46 Ycf46; Provisional
Probab=77.63 E-value=3.9 Score=19.53 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=17.9
Q ss_pred HHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 6543127-9986699982489889999999878
Q gi|254780991|r 674 TIGRAAR-NVNSKVILYADTITKSIQLAIDETT 705 (805)
Q Consensus 674 ~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~ 705 (805)
-.=|.|| .. ++|.|.++....+.|-++.
T Consensus 376 ellR~GRFD~----~~~v~lP~~~~R~~I~~ih 404 (491)
T CHL00195 376 ELLRKGRFDE----IFFLDLPNLEERELIFKIH 404 (491)
T ss_pred HHCCCCCCCE----EEECCCCCHHHHHHHHHHH
T ss_conf 7708987770----4764895989999999999
No 483
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=77.61 E-value=4.7 Score=18.97 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=28.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHH
Q ss_conf 799863376469999999997199789993163468
Q gi|254780991|r 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206 (805)
Q Consensus 171 qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La 206 (805)
-+|-|..|||||-+--.+.++++.+.+=+=..|.-.
T Consensus 2 I~LiG~~G~GKstigk~la~~l~~~fiD~D~~Ie~~ 37 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQR 37 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHH
T ss_conf 899889999889999999999798979685999999
No 484
>PRK13909 putative recombination protein RecB; Provisional
Probab=77.61 E-value=4 Score=19.45 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=14.8
Q ss_pred EEEEHHHHHCCCCCCCCCE
Q ss_conf 9998458753578777117
Q gi|254780991|r 635 VLVGINLLREGLDIPECGL 653 (805)
Q Consensus 635 iLvgt~~~akGlD~p~v~l 653 (805)
|=|=|==-+|||-||-|-+
T Consensus 602 V~iMTIHkSKGLEFpvVil 620 (911)
T PRK13909 602 VQIMTVHKSKGLEFPHVIV 620 (911)
T ss_pred EEEEEEEECCCCCCCEEEE
T ss_conf 0777632025766887996
No 485
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=77.38 E-value=3.4 Score=20.01 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 98899999998788888
Q gi|254780991|r 693 ITKSIQLAIDETTRRRE 709 (805)
Q Consensus 693 ~t~~~~~ai~e~~rrr~ 709 (805)
-.+.|..+|++..|+-.
T Consensus 700 ~n~~~~~FIe~~yRr~R 716 (864)
T PRK13721 700 KNHKVGEFIEKGYRTAR 716 (864)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 98789999999999988
No 486
>KOG3354 consensus
Probab=77.37 E-value=2.8 Score=20.64 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.5
Q ss_pred EEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 3799863376469999999997199
Q gi|254780991|r 170 VQLLLGVTGSGKTFTMAKVIEAMQR 194 (805)
Q Consensus 170 ~qlL~GVTGSGKTevya~lI~~~gr 194 (805)
..++.||.||||+-+-..++++.+.
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~ 38 (191)
T KOG3354 14 VIVVMGVSGSGKSTIGKALSEELGL 38 (191)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 5999835887744599999998588
No 487
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=77.31 E-value=1.6 Score=22.39 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 0124444777753321120145101
Q gi|254780991|r 420 QRLEQRITYDLEMLETTGSCQSIEN 444 (805)
Q Consensus 420 ~rL~qR~~~dle~l~e~G~~~gien 444 (805)
..|.+++......+...|+..-+|.
T Consensus 331 ~~l~~~~~~v~~~l~~~G~~~~rE~ 355 (789)
T PRK13853 331 NSLADRGARARTRLADAGAVVVQEG 355 (789)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9999999999999974895799840
No 488
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.25 E-value=2 Score=21.73 Aligned_cols=39 Identities=38% Similarity=0.627 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 99999999887397337998633764699999999971997
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~ 195 (805)
.|++.+.=.++.| ....+.|-+||||| |.+++|.-.-+|
T Consensus 16 ~~l~~is~~v~~G-e~~~iiGpSGsGKS-Tll~~i~Gl~~p 54 (239)
T cd03296 16 VALDDVSLDIPSG-ELVALLGPSGSGKT-TLLRLIAGLERP 54 (239)
T ss_pred EEECCCEEEECCC-CEEEEECCCCCHHH-HHHHHHHCCCCC
T ss_conf 9986638698899-89999999997799-999999769999
No 489
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=77.09 E-value=3.4 Score=19.99 Aligned_cols=39 Identities=28% Similarity=0.333 Sum_probs=30.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHH
Q ss_conf 8888884389999999988739733799863376469999
Q gi|254780991|r 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185 (805)
Q Consensus 146 ~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevy 185 (805)
+|+--=.|+.|-..|.-+. .|.+.-++.|--|||||++.
T Consensus 177 D~~DV~GQ~~AKrAleiAA-AGgHnLl~~GpPGtGKTmla 215 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAA-AGGHNLLLVGPPGTGKTMLA 215 (490)
T ss_pred CHHHHCCCHHHHHHHHHHH-HCCCCEEEECCCCCCHHHHH
T ss_conf 6666438499999999998-43886787569988656764
No 490
>PRK10646 putative ATPase; Provisional
Probab=77.04 E-value=4.5 Score=19.06 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=43.6
Q ss_pred CHHHHHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 43899999999-88739733799863376469999999997199789993163468999999998678983899862134
Q gi|254780991|r 152 DQPAAIAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 (805)
Q Consensus 152 dQ~~Ai~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~ 230 (805)
.+-.++.+-.. .+..| ...+|+|--|||||...-.+++..|.+.-|-.|-=+|.. .|. .+ ... +.|+|
T Consensus 12 ~~T~~lg~~la~~l~~g-~vi~L~G~LGaGKTtf~r~i~~~lg~~~~V~SPTf~lv~-~Y~-----~~--~~~--~~H~D 80 (153)
T PRK10646 12 QATLDLGERVAKACDGA-TVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTLVE-PYT-----LD--NLM--VYHFD 80 (153)
T ss_pred HHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEE-EEC-----CC--CCE--EEEEE
T ss_conf 99999999999768999-799998888789999999999984997862699764799-732-----89--933--89998
Q ss_pred CCC
Q ss_conf 444
Q gi|254780991|r 231 YYQ 233 (805)
Q Consensus 231 ~yq 233 (805)
.|+
T Consensus 81 lYR 83 (153)
T PRK10646 81 LYR 83 (153)
T ss_pred EEC
T ss_conf 534
No 491
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=76.80 E-value=4.4 Score=19.16 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 62147899999999863596687325764578999999997318986999845875357877711799962885674446
Q gi|254780991|r 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667 (805)
Q Consensus 588 ~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~ 667 (805)
++|.--.|..|...|...|..+..+|+ +-++.||. .|. ||-..
T Consensus 453 gsGKstiA~~le~~L~~~g~~~~~LDG-------------------------d~lR~gl~-----------~dl-gf~~~ 495 (613)
T PRK05506 453 GSGKSTIANLVERRLHALGRHTYVLDG-------------------------DNVRHGLN-----------RDL-GFTDA 495 (613)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECC-------------------------HHHHHHHC-----------CCC-CCCHH
T ss_conf 897479999999999977998799880-------------------------89874104-----------577-97989
Q ss_pred HHH-HHHHHHHHCC--CCCCEEEE
Q ss_conf 013-7766543127--99866999
Q gi|254780991|r 668 KTS-LIQTIGRAAR--NVNSKVIL 688 (805)
Q Consensus 668 ~~~-~~q~~GRagR--~~~G~~il 688 (805)
.+. -+-|+|..++ ...|.+.+
T Consensus 496 dR~enirR~~eva~l~~~aG~i~i 519 (613)
T PRK05506 496 DRVENIRRVAEVARLMADAGLIVL 519 (613)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 999999999999999986898899
No 492
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=76.69 E-value=4.9 Score=18.79 Aligned_cols=36 Identities=33% Similarity=0.419 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 3899999999887397337998633764699999999
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI 189 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI 189 (805)
----+.+|.-++... .+.||.|-||.|||-+.-.+.
T Consensus 450 sl~lleql~~~Iq~n-ep~LLVGeTGtGKTT~IQ~La 485 (4600)
T COG5271 450 SLWLLEQLLWNIQNN-EPTLLVGETGTGKTTMIQYLA 485 (4600)
T ss_pred HHHHHHHHHHHHCCC-CCEEEEECCCCCHHHHHHHHH
T ss_conf 799999998774169-845887148876546999999
No 493
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=76.67 E-value=4.9 Score=18.79 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHCCC-CEE-EEEEECCCCHHHHHHHHHHH
Q ss_conf 3899999999887397-337-99863376469999999997
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE-KVQ-LLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~-~~q-lL~GVTGSGKTevya~lI~~ 191 (805)
|...++.|..+|..|. .+- |+.|.-|.|||- .|+++++
T Consensus 21 Q~~v~~~L~nal~~~rl~haylf~G~rGvGKTt-~ARi~Ak 60 (717)
T PRK08853 21 QSHVLTALENALAHNRLHHAYLFSGTRGVGKTT-IGRLFAK 60 (717)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHH-HHHHHHH
T ss_conf 599999999999709974057610889888989-9999999
No 494
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=76.66 E-value=4.3 Score=19.25 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH
Q ss_conf 3899999999887397337998633764699999
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya 186 (805)
|..|...|.-.. .|.++.+|.|--|||||..--
T Consensus 8 Q~~akrAl~iAa-aG~H~lLl~GpPG~GKTmlA~ 40 (207)
T pfam01078 8 QEQAKRALEIAA-AGGHNLLMIGPPGSGKTMLAK 40 (207)
T ss_pred CHHHHHHHHHHH-CCCCCEEEECCCCCCHHHHHH
T ss_conf 599999999985-478758978899802999997
No 495
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=76.47 E-value=2.6 Score=20.90 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=19.4
Q ss_pred CEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 33799863376469999999997
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEA 191 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~ 191 (805)
+..++.|..|+|||-...+++-.
T Consensus 1 r~i~i~G~aG~GKTtll~kl~~~ 23 (165)
T pfam05729 1 RTVILQGEAGSGKTTLLQKLALL 23 (165)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98999827989899999999999
No 496
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=76.43 E-value=3.2 Score=20.18 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=14.7
Q ss_pred EEEEECCCCHHHHHHHHHHHCC
Q ss_conf 9986337646999999999719
Q gi|254780991|r 172 LLLGVTGSGKTFTMAKVIEAMQ 193 (805)
Q Consensus 172 lL~GVTGSGKTevya~lI~~~g 193 (805)
-+-|.+|||||-+--.+.+..+
T Consensus 3 gI~G~sgsGKTT~a~~L~~~l~ 24 (198)
T cd02023 3 GIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred EEECCCCCCHHHHHHHHHHHHC
T ss_conf 9889998859999999999809
No 497
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=76.33 E-value=5 Score=18.72 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=26.0
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 337998633764699999999971997899931
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvP 201 (805)
+-.||||--|+|||.+--.+..+++-+.+-+..
T Consensus 167 kGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~ 199 (390)
T PRK03992 167 KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 199 (390)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEH
T ss_conf 727868989997899999999874888799667
No 498
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=76.11 E-value=3.9 Score=19.57 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=32.2
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEE---EECCHHHH-HHHHHHHHHHCCCC
Q ss_conf 998633764699999999971997899---93163468-99999999867898
Q gi|254780991|r 172 LLLGVTGSGKTFTMAKVIEAMQRPAIV---MAPNKILA-AQLYSEFKNFFPHN 220 (805)
Q Consensus 172 lL~GVTGSGKTevya~lI~~~gr~aLv---LvPei~La-~QL~~rfk~~Fp~n 220 (805)
-+.|--|||||.+- +.+++.|-+++- +++++... +..+..+...||.+
T Consensus 3 giTG~igSGKStv~-~~l~~~g~~v~~aD~i~~~l~~~~~~~~~~i~~~fg~~ 54 (179)
T cd02022 3 GLTGGIGSGKSTVA-KLLKELGIPVIDADKIAHEVYEPGGPALQAIVEAFGPD 54 (179)
T ss_pred EEECCCCCCHHHHH-HHHHHCCCEEEECHHHHHHHHHCCHHHHHHHHHHCCCH
T ss_conf 86378757899999-99998799099635999998860769999999873713
No 499
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=76.01 E-value=5.1 Score=18.66 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHCCC-CE-EEEEEECCCCHHHHHHHHHHHC
Q ss_conf 3899999999887397-33-7998633764699999999971
Q gi|254780991|r 153 QPAAIAQLLKGIHSRE-KV-QLLLGVTGSGKTFTMAKVIEAM 192 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~-~~-qlL~GVTGSGKTevya~lI~~~ 192 (805)
|..+.+.|...+.+|. .+ .|.+|--|+|||-+..-+.+.+
T Consensus 20 Qe~i~~~L~nal~~~ri~HAyLF~GP~GtGKts~ArifAkaL 61 (557)
T PRK07270 20 QEVVATTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61 (557)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199999999999859954044210899868999999999995
No 500
>PRK07576 short chain dehydrogenase; Provisional
Probab=75.99 E-value=5.1 Score=18.66 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHH-----HHHHHHHHHCCCCCEEE
Q ss_conf 9986302321246621478999999998635966873257645789-----99999997318986999
Q gi|254780991|r 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE-----RIEIIRDLRLGKFDVLV 637 (805)
Q Consensus 575 i~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~-----r~~il~~~~~g~~diLv 637 (805)
.......|.++.+...++...+++.+.+.+.+..+.++..|+...+ -.++.++| |.+||||
T Consensus 25 a~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~--G~iDiLV 90 (260)
T PRK07576 25 AQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEALGVSADVRDYAAVEAAFAAIADEF--GPIDVLV 90 (260)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHH--CCCCEEE
T ss_conf 99999879999999798899999999999539948999931899999999999999984--9998999
Done!