HHsearch alignment for GI: 254780991 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.73 E-value=0.039 Score=34.53 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=48.6
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 999999988739733799863376469999999997----1997899931634689999999986789
Q gi|254780991|r 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----MQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 156 Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
T Consensus 8 ~lD~~~gGl~~G-~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~-~~~~~~R~~a~~~~ 73 (186)
T pfam03796 8 DLDQLTGGLQKG-DLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEMS-AEQLAERLLSSESR 73 (186)
T ss_pred HHHHHHCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHHHHHC
T ss_conf 788642698888-1799996799987999999999999970996687547552-99999999998626