HHsearch alignment for GI: 254780991 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=95.64 E-value=0.2 Score=29.25 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=43.8
Q ss_pred HHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 9999999-8873973379986337646999999999----71997899931634689999999986
Q gi|254780991|r 156 AIAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKILAAQLYSEFKNF 216 (805)
Q Consensus 156 Ai~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~----~~gr~aLvLvPei~La~QL~~rfk~~ 216 (805)
T Consensus 7 ~LD~~l~GGi~~g-s~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~-~~~l~~~~~~~ 70 (231)
T pfam06745 7 GLDEILKGGIPEG-RVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEP-PEDLRENAKSF 70 (231)
T ss_pred HHHHHCCCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHHHC
T ss_conf 6886316998299-6999985897259999999999999865896899981379-99999999982