HHsearch alignment for GI: 254780991 and conserved domain: pfam07652
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=96.11 E-value=0.0045 Score=41.55 Aligned_cols=129 Identities=15% Similarity=0.150 Sum_probs=72.3
Q ss_pred EEEEEEECCCCHH-HHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf 3799863376469-9999999971---99789993163468999999998678983899862134444210155543210
Q gi|254780991|r 170 VQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245 (805)
Q Consensus 170 ~qlL~GVTGSGKT-evya~lI~~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~~i 245 (805)
T Consensus 4 ~t~ld~HPGaGKTr~vLP~~v~~~i~~~lRtlVLaPTRVV~~Em~eAL~g----~~vr~~t~a~~--------------- 64 (146)
T pfam07652 4 LTVLDLHPGAGKTRKVLPELVRECIDRRLRTLVLAPTRVVLAEMEEALRG----LPIRYHTPAVS--------------- 64 (146)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCC----CCCEEECHHHH---------------
T ss_conf 27985389999702248999999997286189977279999999999758----99467523431---------------
Q ss_pred HHHCCCCHHHHHHHHHHHHH-HHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHH
Q ss_conf 22103588999999999999-85499849982778961689834772257999419811178753234311765633877
Q gi|254780991|r 246 EKESSINEQIDRMRHSATRS-LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324 (805)
Q Consensus 246 ~k~~s~n~~i~~~R~~a~~~-l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a~ 324 (805)
T Consensus 65 ~-~~~~~~ivdvmCHAT~t~r~l~----------------~~~~~ny~viIMDE~H~~D-----P~SIAar-----G~~~ 117 (146)
T pfam07652 65 S-EHTGREIVDVMCHATFTQRLLS----------------PVRVPNYEVIIMDEAHFTD-----PASIAAR-----GYIS 117 (146)
T ss_pred C-CCCCCCEEEEECHHHHHHHHHC----------------CCCCCCEEEEEEECCCCCC-----HHHHHHH-----HHHH
T ss_conf 3-6688841889715988889736----------------8885644799985122389-----8999988-----9999
Q ss_pred HHHHHCCCCEEEECCCCCHH
Q ss_conf 54533187247831788877
Q gi|254780991|r 325 IRGTFRVCGDSIEIFPSHLE 344 (805)
Q Consensus 325 ~RG~f~~rg~ILdsatps~E 344 (805)
T Consensus 118 ~~~~~g~~a~i~mTATPPG~ 137 (146)
T pfam07652 118 TLVELGEAAAIFMTATPPGT 137 (146)
T ss_pred HHHHCCCEEEEEEECCCCCC
T ss_conf 88543865799995689998