HHsearch alignment for GI: 254780991 and conserved domain: pfam12344
>pfam12344 UvrB Ultra-violet resistance protein B. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam00271, pfam02151, pfam04851. There are two conserved sequence motifs: YAD and RRR. This family is the C terminal region of the UvrB protein which conveys mutational resistance against UV light to various different species.
Probab=98.75 E-value=4.8e-09 Score=86.25 Aligned_cols=43 Identities=58% Similarity=0.837 Sum_probs=41.1
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9824898899999998788888888768871885302346677
Q gi|254780991|r 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730 (805)
Q Consensus 688 l~ad~~t~~~~~ai~e~~rrr~~q~~~n~~~~i~p~~i~k~i~ 730 (805)
T Consensus 1 lYAD~~T~SM~~ai~eT~rRR~~Q~~yN~~h~I~P~ti~k~i~ 43 (44)
T pfam12344 1 LYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIKKKIR 43 (44)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9875251999999999999999999999983998625556286