HHsearch alignment for GI: 254780991 and conserved domain: smart00491
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.03 E-value=0.2 Score=29.23 Aligned_cols=74 Identities=27% Similarity=0.386 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHCCCC---CEEEEHH--HHHCCCCCCC--CCEEEEECCCC--C-------------------CC---
Q ss_conf 457899999999731898---6999845--8753578777--11799962885--6-------------------74---
Q gi|254780991|r 616 VKTLERIEIIRDLRLGKF---DVLVGIN--LLREGLDIPE--CGLVAILDADK--E-------------------GF--- 664 (805)
Q Consensus 616 ~~~~~r~~il~~~~~g~~---diLvgt~--~~akGlD~p~--v~lV~i~dAD~--~-------------------~f--- 664 (805)
T Consensus 28 ~~~~~~~~~l~~f~~~~~~~gaiL~~v~~Gk~sEGiDf~~~~~r~viivglP~p~~~d~~~~~r~~y~~~~~~~~~~~~~ 107 (142)
T smart00491 28 KDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEV 107 (142)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 98357999999999862369819999844157521505997765999970899999999999999999986489983311
Q ss_pred --CCCHHHHHHHHHHHCCCCC--CEEEEE
Q ss_conf --4460137766543127998--669998
Q gi|254780991|r 665 --LRSKTSLIQTIGRAARNVN--SKVILY 689 (805)
Q Consensus 665 --~~~~~~~~q~~GRagR~~~--G~~il~ 689 (805)
T Consensus 108 y~~~a~~~v~QaiGR~IR~~~D~g~iil~ 136 (142)
T smart00491 108 YLFDAMRALAQAIGRAIRHKNDYGVVVLL 136 (142)
T ss_pred EHHHHHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 25899999999829675468853999997