HHsearch alignment for GI: 254780991 and conserved domain: smart00491

>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.03  E-value=0.2  Score=29.23  Aligned_cols=74  Identities=27%  Similarity=0.386  Sum_probs=47.2

Q ss_pred             CCHHHHHHHHHHHHCCCC---CEEEEHH--HHHCCCCCCC--CCEEEEECCCC--C-------------------CC---
Q ss_conf             457899999999731898---6999845--8753578777--11799962885--6-------------------74---
Q gi|254780991|r  616 VKTLERIEIIRDLRLGKF---DVLVGIN--LLREGLDIPE--CGLVAILDADK--E-------------------GF---  664 (805)
Q Consensus       616 ~~~~~r~~il~~~~~g~~---diLvgt~--~~akGlD~p~--v~lV~i~dAD~--~-------------------~f---  664 (805)
T Consensus        28 ~~~~~~~~~l~~f~~~~~~~gaiL~~v~~Gk~sEGiDf~~~~~r~viivglP~p~~~d~~~~~r~~y~~~~~~~~~~~~~  107 (142)
T smart00491       28 KDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEV  107 (142)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             98357999999999862369819999844157521505997765999970899999999999999999986489983311


Q ss_pred             --CCCHHHHHHHHHHHCCCCC--CEEEEE
Q ss_conf             --4460137766543127998--669998
Q gi|254780991|r  665 --LRSKTSLIQTIGRAARNVN--SKVILY  689 (805)
Q Consensus       665 --~~~~~~~~q~~GRagR~~~--G~~il~  689 (805)
T Consensus       108 y~~~a~~~v~QaiGR~IR~~~D~g~iil~  136 (142)
T smart00491      108 YLFDAMRALAQAIGRAIRHKNDYGVVVLL  136 (142)
T ss_pred             EHHHHHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf             25899999999829675468853999997